mRNA_P-fluviatile_contig8.14413.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14413.1
Unique NamemRNA_P-fluviatile_contig8.14413.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1199457..1200045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size589
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14413.1prot_P-fluviatile_contig8.14413.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1199541..1199891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.1221185-UTR-P-fluviatile_contig8:1199456..11995401622817218.1221185-UTR-P-fluviatile_contig8:1199456..1199540Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1199457..1199540 +
1693571543.6321454-UTR-P-fluviatile_contig8:1199456..11995401693571543.6321454-UTR-P-fluviatile_contig8:1199456..1199540Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1199457..1199540 +
1622817218.1425042-UTR-P-fluviatile_contig8:1199891..12000451622817218.1425042-UTR-P-fluviatile_contig8:1199891..1200045Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1199892..1200045 +
1693571543.8084173-UTR-P-fluviatile_contig8:1199891..12000451693571543.8084173-UTR-P-fluviatile_contig8:1199891..1200045Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1199892..1200045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817218.1329796-CDS-P-fluviatile_contig8:1199540..11998911622817218.1329796-CDS-P-fluviatile_contig8:1199540..1199891Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1199541..1199891 +
1693571543.799083-CDS-P-fluviatile_contig8:1199540..11998911693571543.799083-CDS-P-fluviatile_contig8:1199540..1199891Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1199541..1199891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14413.1

>prot_P-fluviatile_contig8.14413.1 ID=prot_P-fluviatile_contig8.14413.1|Name=mRNA_P-fluviatile_contig8.14413.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=117bp
MWRVHNRSLCGWGNMTILRVPYFIVLYFPVARGPNEEAEGVWGVIFTSDG
GVAVSRAGLVDHARAMGAQHAHRYAHAHEPPPPHATQAITHDDGRQEDRR
MPLATPTNLSAAFFSV*
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mRNA from alignment at P-fluviatile_contig8:1199457..1200045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14413.1 ID=mRNA_P-fluviatile_contig8.14413.1|Name=mRNA_P-fluviatile_contig8.14413.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=589bp|location=Sequence derived from alignment at P-fluviatile_contig8:1199457..1200045+ (Porterinema fluviatile SAG_2381)
GTGGGTCGTCCGGGGGGGGGGCTCGTCGTTGCGAGTGTGGTTCagAGAGA
GAGAGAAAAACGAAATGCGGTGCCCCGAAAAGGGATGTGGCGTGTTCACA
ATCGCAGCTTGTGTGGATGGGGAAACATGACCATTTTGCGTGTTCCATAT
TTTATTGTTCTCTACTTTCCTGTGGCACGGGGCCCGAACGAGGAGGCAGA
GGGCGTGTGGGGGGTGATCTTTACATCCGACGGGGGCGTCGCGGTCTCTC
GAGCGGGGCTTGTTGACCATGCAAGAGCGATGGGGGCACAGCACGCACAT
CGATACGCCCATGCTCACGAACCACCGCCTCCGCACGCGACACAGGCAAT
CACACACGACGACGGCAGACAAGAGGACAGACGCATGCCGCTCGCGACGC
CAACAAACTTATCGGCAGCGTTTTTCTCTGTATAACTCGGGCGTTCTTAC
AACGGTCTTGTCGCGATTCTCTCACCCACCTCCACCCGAACACACAAACC
ACAAATACACACAAGGGAAAACACTCACCTGAGGGTCCACCTGCACCTCC
TCCTCCGGGGGCTCGAAGCCCAGCTTGTACAAGACGACG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1199457..1200045+

>mRNA_P-fluviatile_contig8.14413.1 ID=mRNA_P-fluviatile_contig8.14413.1|Name=mRNA_P-fluviatile_contig8.14413.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=702bp|location=Sequence derived from alignment at P-fluviatile_contig8:1199457..1200045+ (Porterinema fluviatile SAG_2381)
ATGTGGCGTGTTCACAATCGCAGCTTGTGTGGATGGGGAAACATGACCAT
TTTGCGTGTTCCATATTTTATTGTTCTCTACTTTCCTGTGGCACGGGGCC
CGAACGAGGAGGCAGAGGGCGTGTGGGGGGTGATCTTTACATCCGACGGG
GGCGTCGCGGTCTCTCGAGCGGGGCTTGTTGACCATGCAAGAGCGATGGG
GGCACAGCACGCACATCGATACGCCCATGCTCACGAACCACCGCCTCCGC
ACGCGACACAGGCAATCACACACGACGACGGCAGACAAGAGGACAGACGC
ATGCCGCTCGCGACGCCAACAAACTTATCGGCAGCGTTTTTCTCTGTATA
AATGTGGCGTGTTCACAATCGCAGCTTGTGTGGATGGGGAAACATGACCA
TTTTGCGTGTTCCATATTTTATTGTTCTCTACTTTCCTGTGGCACGGGGC
CCGAACGAGGAGGCAGAGGGCGTGTGGGGGGTGATCTTTACATCCGACGG
GGGCGTCGCGGTCTCTCGAGCGGGGCTTGTTGACCATGCAAGAGCGATGG
GGGCACAGCACGCACATCGATACGCCCATGCTCACGAACCACCGCCTCCG
CACGCGACACAGGCAATCACACACGACGACGGCAGACAAGAGGACAGACG
CATGCCGCTCGCGACGCCAACAAACTTATCGGCAGCGTTTTTCTCTGTAT
AA
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