mRNA_P-fluviatile_contig8.14408.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14408.1
Unique NamemRNA_P-fluviatile_contig8.14408.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14408.1 vs. uniprot
Match: A0A5A8D7M2_CAFRO (Protein kinase domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D7M2_CAFRO)

HSP 1 Score: 56.2 bits (134), Expect = 1.650e-5
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 2 
Query:  161 LGKYEVWSGKRAKQESPGIDVKLGFDLSTQRSVTVKAFDLAEFDGPRDGVLELISLELCTLWRLDHPNITELLEVFASPSMTKIFVILETVSGGSDLFEAIAAEG 475
            +GKYE+  GK   + + G  VK   D  T + V +K  D  +      G    I  E+  +  + HPN+ +L EV AS   TKIF++LE V+GG +LF+ I AEG
Sbjct:    5 VGKYEI--GKTLGEGTFG-KVKWAVDTETNQKVAIKILDKEKIQRQNMGAQ--IKKEISIMKMVRHPNVVKLHEVLAS--RTKIFIVLELVTGG-ELFDKIVAEG 101
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BLAST of mRNA_P-fluviatile_contig8.14408.1 vs. uniprot
Match: A0A6A2YAF4_HIBSY (Non-specific serine/threonine protein kinase n=4 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YAF4_HIBSY)

HSP 1 Score: 54.3 bits (129), Expect = 7.290e-5
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 2 
Query:  143 RRKTFLLGKYEVWSGKRAKQESPGIDVKLGFDLSTQRSVTVKAFDLAEFDGPRDGVLELISLELCTLWRLDHPNITELLEVFASPSMTKIFVILETVSGGSDLFEAI 463
            +++T  LGKYE+    R   E     VK   +  T  SV +K   LA+    + G+++ I  E+  +  + HPNI  L EV AS   TKI++ILE VSGG +LF+ I
Sbjct:    2 KKRTKKLGKYEIG---RTIGEGTFAKVKFAKNTDTGESVAIKV--LAKTTILKHGMVDQIKREISIMKIVKHPNIVRLHEVLAS--RTKIYIILEFVSGG-ELFDKI 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8D7M2_CAFRO1.650e-538.10Protein kinase domain-containing protein n=2 Tax=C... [more]
A0A6A2YAF4_HIBSY7.290e-538.32Non-specific serine/threonine protein kinase n=4 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1168759..1169509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size751
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14408.1prot_P-fluviatile_contig8.14408.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1168895..1169239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817230.4773417-UTR-P-fluviatile_contig8:1168758..11688941622817230.4773417-UTR-P-fluviatile_contig8:1168758..1168894Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1168759..1168894 +
1693571584.1722112-UTR-P-fluviatile_contig8:1168758..11688941693571584.1722112-UTR-P-fluviatile_contig8:1168758..1168894Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1168759..1168894 +
1622817230.4997084-UTR-P-fluviatile_contig8:1169239..11695091622817230.4997084-UTR-P-fluviatile_contig8:1169239..1169509Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1169240..1169509 +
1693571584.4229734-UTR-P-fluviatile_contig8:1169239..11695091693571584.4229734-UTR-P-fluviatile_contig8:1169239..1169509Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1169240..1169509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817230.4885185-CDS-P-fluviatile_contig8:1168894..11692391622817230.4885185-CDS-P-fluviatile_contig8:1168894..1169239Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1168895..1169239 +
1693571584.4096189-CDS-P-fluviatile_contig8:1168894..11692391693571584.4096189-CDS-P-fluviatile_contig8:1168894..1169239Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1168895..1169239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14408.1

>prot_P-fluviatile_contig8.14408.1 ID=prot_P-fluviatile_contig8.14408.1|Name=mRNA_P-fluviatile_contig8.14408.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=115bp
MTRRKTFLLGKYEVWSGKRAKQESPGIDVKLGFDLSTQRSVTVKAFDLAE
FDGPRDGVLELISLELCTLWRLDHPNITELLEVFASPSMTKIFVILETVS
GGSDLFEAIAAEGG*
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mRNA from alignment at P-fluviatile_contig8:1168759..1169509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14408.1 ID=mRNA_P-fluviatile_contig8.14408.1|Name=mRNA_P-fluviatile_contig8.14408.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=751bp|location=Sequence derived from alignment at P-fluviatile_contig8:1168759..1169509+ (Porterinema fluviatile SAG_2381)
CCTTTCCCTCTCGCGCGCGCTCGCGCTTGGGTGCATTGTTTGTTGCTAAA
AGACGTTTCTCCGAACACATAATTTCACGTGTGGGAGTAGGTAGCAAGCA
CAGGCCGCGCAGCGATAGCGGCCAGGGATTTTCATCATGACACGCAGGAA
GACCTTCCTGTTGGGGAAGTATGAAGTCTGGTCCGGAAAGCGTGCGAAGC
AGGAGTCCCCAGGTATCGACGTTAAGCTGGGATTTGATCTCTCCACTCAA
CGGAGCGTTACCGTGAAAGCCTTCGACCTCGCTGAGTTCGACGGTCCAAG
GGACGGCGTTTTGGAGCTGATTTCTCTGGAACTGTGCACGCTGTGGAGGT
TGGATCACCCAAATATCACGGAGCTGTTGGAGGTGTTCGCCTCCCCTTCA
ATGACGAAGATCTTCGTGATCTTGGAAACTGTCTCTGGTGGGAGCGACTT
GTTCGAGGCCATCGCTGCCGAGGGCGGGTGAGATTGCTTCCGAACATTTA
ATCATTGTTGTTGTTGTTGTTGTGATCACTGAAAACCGATACTGTATGTT
GAAGTATAGTGCATCCGAGTTCTACAAAATGCCGAGGCGTGCGTGAAGGT
GCCAGCCATAACACAAGCACATGGCCATTTCGCCCCACATCATGACTCGC
GCCGAGGAAGCACGGCAAGTTCGTGTCTCAACTTATGTCCAAGCACCGCT
CTACGTCTTCCCAAGTTATTCGAACAAAATTTACACCACCAGCAAGCAGG
G
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1168759..1169509+

>mRNA_P-fluviatile_contig8.14408.1 ID=mRNA_P-fluviatile_contig8.14408.1|Name=mRNA_P-fluviatile_contig8.14408.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=690bp|location=Sequence derived from alignment at P-fluviatile_contig8:1168759..1169509+ (Porterinema fluviatile SAG_2381)
ATGACACGCAGGAAGACCTTCCTGTTGGGGAAGTATGAAGTCTGGTCCGG
AAAGCGTGCGAAGCAGGAGTCCCCAGGTATCGACGTTAAGCTGGGATTTG
ATCTCTCCACTCAACGGAGCGTTACCGTGAAAGCCTTCGACCTCGCTGAG
TTCGACGGTCCAAGGGACGGCGTTTTGGAGCTGATTTCTCTGGAACTGTG
CACGCTGTGGAGGTTGGATCACCCAAATATCACGGAGCTGTTGGAGGTGT
TCGCCTCCCCTTCAATGACGAAGATCTTCGTGATCTTGGAAACTGTCTCT
GGTGGGAGCGACTTGTTCGAGGCCATCGCTGCCGAGGGCGGGTGAATGAC
ACGCAGGAAGACCTTCCTGTTGGGGAAGTATGAAGTCTGGTCCGGAAAGC
GTGCGAAGCAGGAGTCCCCAGGTATCGACGTTAAGCTGGGATTTGATCTC
TCCACTCAACGGAGCGTTACCGTGAAAGCCTTCGACCTCGCTGAGTTCGA
CGGTCCAAGGGACGGCGTTTTGGAGCTGATTTCTCTGGAACTGTGCACGC
TGTGGAGGTTGGATCACCCAAATATCACGGAGCTGTTGGAGGTGTTCGCC
TCCCCTTCAATGACGAAGATCTTCGTGATCTTGGAAACTGTCTCTGGTGG
GAGCGACTTGTTCGAGGCCATCGCTGCCGAGGGCGGGTGA
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