mRNA_P-fluviatile_contig8.14399.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14399.1
Unique NamemRNA_P-fluviatile_contig8.14399.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: A0A6H5JIN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN5_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 4.960e-64
Identity = 125/185 (67.57%), Postives = 138/185 (74.59%), Query Frame = 2
Query:   41 LREVATIAVSAILCCSNGRCYVSAFAFTSPLR-SPSFQRQSPISTLRTQLHQQPQPQPQQLRVLGTTGRCK---HVTGAVAARGMSMAQETLILTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLEDADP 583
            LR VA +A +  LCCS+ RC  SAFAFT+ L  S +  RQS  S+         +   +Q R L T  R +   H+   V  RG+ MAQETLILTEENV+ VLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEK  VLARV NFVQTRIPECVDVEIEDP+QLEDADP
Sbjct:   11 LRVVAVVAAALALCCSS-RC--SAFAFTARLSPSTAVLRQSHSSSSSRCSGSWDRRVQEQFRALDTRSRGRSETHLANGVG-RGLYMAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDADP 191          
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: D7G2J7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J7_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.660e-57
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 2
Query:  287 MAQETLILTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLEDADP-QGRG 595
            MAQETLILTEENV+ VLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEK  VLARV NFVQTRIPECVDVEIEDP+QLEDADP QG G
Sbjct:    1 MAQETLILTEENVVAVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKTTVLARVGNFVQTRIPECVDVEIEDPSQLEDADPPQGPG 104          
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: A0A7S3T494_EMIHU (Hypothetical protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T494_EMIHU)

HSP 1 Score: 123 bits (308), Expect = 3.730e-30
Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 2
Query:  302 LILTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLEDA 577
            L+LTEENV  VL EA+R+L T+FG+N E+ AVGITG  + V LDGP+VV+RL+GRFWH +A VL R+  FV  RIPEC+ VEIEDP+QLEDA
Sbjct:   71 LVLTEENVQAVLDEAERDLGTMFGSNPESAAVGITGRADLVELDGPTVVIRLSGRFWHARARVLERLEAFVLERIPECIGVEIEDPSQLEDA 162          
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: A0A7S0DXW5_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DXW5_9CRYP)

HSP 1 Score: 122 bits (305), Expect = 8.910e-30
Identity = 62/117 (52.99%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  242 RCKHVTGAVAARGMSMAQETLILTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLEDADPQGR 592
            R K V+  ++  G  M +E L LTEENV   L EAK  L T+FGN+ EN  +GITGD + + LDGP   VRL GRFWH++A VLARV N+++TRIPE ++V IEDP QL+D  P+ +
Sbjct:   62 RRKGVSVKLSVDGPPMDKEPLDLTEENVQNALEEAKEILGTMFGNSQENREIGITGDVKLINLDGPFATVRLVGRFWHKRADVLARVENYLKTRIPEIIEVSIEDPMQLDDNLPENQ 178          
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: A0A0G4GKJ3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GKJ3_VITBC)

HSP 1 Score: 120 bits (300), Expect = 3.520e-29
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 2
Query:  293 QETLILTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLED 574
            ++ LILTEENV   L   ++ELS LFGN+ EN +VGITGD EF  LDGP V++RL GRFWH +A VL RV  F+  RIPEC+ VEIEDPA L+D
Sbjct:   73 EDQLILTEENVEKTLEACRQELSALFGNSEENRSVGITGDVEFAGLDGPLVILRLKGRFWHSRATVLERVTAFLLNRIPECLGVEIEDPAMLDD 166          
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: L1JDA8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JDA8_GUITC)

HSP 1 Score: 118 bits (295), Expect = 1.890e-28
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 2
Query:  215 QLRVLGTTGRCKHVTGAVAAR----GMSMAQETLILTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLEDADPQGR 592
            +LR  G T         VA R    G  M +E L LTE+NV   L E+K  L T+FGN+ EN  +GITGD + V LDGP   VRL GRFWH+++ VLARV N+V+TR+PE V+V IEDP QL+D  P+ +
Sbjct:   38 ELRTGGLTSLPLQTRKGVALRLSVGGPPMDKEPLDLTEDNVQQALEESKEILGTMFGNSQENREIGITGDVQLVNLDGPFASVRLVGRFWHKRSDVLARVENYVKTRVPEIVEVSIEDPMQLDDNLPENQ 167          
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: A0A7S2FRC3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FRC3_9EUKA)

HSP 1 Score: 119 bits (297), Expect = 5.220e-28
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 2
Query:  296 ETLILTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLEDADP 583
            +T IL EEN   VLAE   EL TLFG+NAE+  VGITG+  FV LDGP +V+ L+GRFWH+++VV+ RV+ +V  RIPECVDVEI D AQL+D +P
Sbjct:   44 KTRILDEENAKEVLAECMEELGTLFGSNAESLKVGITGEVSFVELDGPILVISLSGRFWHQRSVVVDRVSKYVMDRIPECVDVEIVDAAQLDDTNP 139          
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: A0A7S3EC75_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC75_9RHOD)

HSP 1 Score: 113 bits (283), Expect = 5.830e-27
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 2
Query:  299 TLILTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLEDAD 580
            T  L+EEN+  VL EAK EL TLFGN+ EN  VGITGD     LDG +VV+RLTGRFWH+++ V+ARV+ ++Q RIPE  DV IED +QL+DAD
Sbjct:   47 TTYLSEENINIVLEEAKIELGTLFGNSEENREVGITGDVSLAELDGVTVVLRLTGRFWHKRSDVVARVSQYLQNRIPEVCDVMIEDESQLDDAD 140          
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: A0A7S3EXN2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EXN2_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 7.220e-27
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  272 ARGMSMAQETLILTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLEDADP 583
            +R   M  E  +L EEN   VL E  +EL TLFG NAE+  VGITG   FV LDGP++VV L+GRFWHE++ V+ RV +FV  RIPECV VEI D AQL+D DP
Sbjct:   30 SRPAMMKPEERVLDEENAKAVLDECMQELGTLFGTNAESLQVGITGIVNFVELDGPTMVVSLSGRFWHERSRVIERVNSFVLERIPECVGVEIVDEAQLDDTDP 133          
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Match: A0A0M0K0E4_9EUKA (WW domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0E4_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 1.160e-26
Identity = 54/92 (58.70%), Postives = 70/92 (76.09%), Query Frame = 2
Query:  308 LTEENVITVLAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKAVVLARVANFVQTRIPECVDVEIEDPAQLEDADP 583
            LTEEN   VL E   +L TLFG+NAE+ AVGITG  +FV L+GP +V+ L+GRFWH++++V+ RV  +V  RIPECVDVEI D AQL+D +P
Sbjct:   10 LTEENARAVLQECMEDLGTLFGSNAESLAVGITGAADFVDLEGPILVISLSGRFWHQRSMVVERVKKYVMDRIPECVDVEIVDVAQLDDTNP 101          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN5_9PHAE4.960e-6467.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2J7_ECTSI1.660e-5792.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3T494_EMIHU3.730e-3065.22Hypothetical protein n=3 Tax=Emiliania huxleyi Tax... [more]
A0A7S0DXW5_9CRYP8.910e-3052.99Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A0G4GKJ3_VITBC3.520e-2961.70Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
L1JDA8_GUITC1.890e-2850.00Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2FRC3_9EUKA5.220e-2860.42Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3EC75_9RHOD5.830e-2760.64Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EXN2_9EUKA7.220e-2757.69Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A0M0K0E4_9EUKA1.160e-2658.70WW domain-containing protein n=1 Tax=Chrysochromul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1084530..1087789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue1e-46
Seed eggNOG ortholog2880.D7G2J7
EggNOG OGs2BCYA@1,2S115@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_002490.1
Exons4
Model size1074
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14399.1prot_P-fluviatile_contig8.14399.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1084991..1087755 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817229.3443735-UTR-P-fluviatile_contig8:1084529..10849901622817229.3443735-UTR-P-fluviatile_contig8:1084529..1084990Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1084530..1084990 -
1693571579.6899924-UTR-P-fluviatile_contig8:1084529..10849901693571579.6899924-UTR-P-fluviatile_contig8:1084529..1084990Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1084530..1084990 -
1622817229.4101622-UTR-P-fluviatile_contig8:1087755..10877891622817229.4101622-UTR-P-fluviatile_contig8:1087755..1087789Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1087756..1087789 -
1693571579.7525923-UTR-P-fluviatile_contig8:1087755..10877891693571579.7525923-UTR-P-fluviatile_contig8:1087755..1087789Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1087756..1087789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817229.3570695-CDS-P-fluviatile_contig8:1084990..10851161622817229.3570695-CDS-P-fluviatile_contig8:1084990..1085116Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1084991..1085116 -
1693571579.703248-CDS-P-fluviatile_contig8:1084990..10851161693571579.703248-CDS-P-fluviatile_contig8:1084990..1085116Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1084991..1085116 -
1622817229.3687701-CDS-P-fluviatile_contig8:1085478..10856221622817229.3687701-CDS-P-fluviatile_contig8:1085478..1085622Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1085479..1085622 -
1693571579.7182028-CDS-P-fluviatile_contig8:1085478..10856221693571579.7182028-CDS-P-fluviatile_contig8:1085478..1085622Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1085479..1085622 -
1622817229.3797681-CDS-P-fluviatile_contig8:1086799..10869201622817229.3797681-CDS-P-fluviatile_contig8:1086799..1086920Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1086800..1086920 -
1693571579.7306092-CDS-P-fluviatile_contig8:1086799..10869201693571579.7306092-CDS-P-fluviatile_contig8:1086799..1086920Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1086800..1086920 -
1622817229.3911338-CDS-P-fluviatile_contig8:1087567..10877551622817229.3911338-CDS-P-fluviatile_contig8:1087567..1087755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1087568..1087755 -
1693571579.7392178-CDS-P-fluviatile_contig8:1087567..10877551693571579.7392178-CDS-P-fluviatile_contig8:1087567..1087755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1087568..1087755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14399.1

>prot_P-fluviatile_contig8.14399.1 ID=prot_P-fluviatile_contig8.14399.1|Name=mRNA_P-fluviatile_contig8.14399.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=193bp
MGLREVATIAVSAILCCSNGRCYVSAFAFTSPLRSPSFQRQSPISTLRTQ
LHQQPQPQPQQLRVLGTTGRCKHVTGAVAARGMSMAQETLILTEENVITV
LAEAKRELSTLFGNNAENTAVGITGDCEFVCLDGPSVVVRLTGRFWHEKA
VVLARVANFVQTRIPECVDVEIEDPAQLEDADPQGRGHGGEL*
back to top

mRNA from alignment at P-fluviatile_contig8:1084530..1087789-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14399.1 ID=mRNA_P-fluviatile_contig8.14399.1|Name=mRNA_P-fluviatile_contig8.14399.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3260bp|location=Sequence derived from alignment at P-fluviatile_contig8:1084530..1087789- (Porterinema fluviatile SAG_2381)
AGAACACTCGTCTGCCGGCACACGATCGTTCGAGATGGGCCTGCGTGAAG TAGCAACGATAGCAGTGTCAGCCATTCTCTGCTGCAGCAATGGTAGATGT TACGTCTCCGCTTTTGCATTCACATCACCCCTTCGGTCCCCTTCGTTCCA GCGGCAAAGCCCCATCTCGACTCTGAGGACGCAACTCCACCAGCAGCCGC AGCCTCAGCCGCAGCAGCTCAGGTACGAGAGCGCCAAAGCCCCGCTCCAC TGTTTCAAAGTCTAAGTCATTAGAGCATAATTGTTATTCGTCTCTGAGTT ATTGGTCCATCCGCGCTCCTGTGTCTCTCCCTGTGGCAAGTATTCAAGAG GGAGTCGGTGATGAAGAACATGCGCACAGCGGTGCTCATAGATCTACTCG ATCAACTCCAGCACAGCGGCGGGGGTAACCCCGAGGACACCATCATGGAC AAATCGGTTAATCCTTTTAAGATTTTCGACGCATGCGTGGTCCTCGTTGT TGTAGGTAAGCTTATCGTCCTGAGAGAAAGTTCAACCGCATGCTGACGAT AATCACTGCAAATTGAATCACTGAGTTTCGATACCGTAGGTCGCGAAGAT ATCACACCCACTGGGTCGATTTTCAACGCTCAATTGCTTCGCGTCCAAGA GCTGGTTTCGTCGAACGGAGCTGTTTCGAGAGAAGCAGTCGAAAGTATTG TAGTGACGCATCGTTCGATGTTAGGCAACCCCTCGCTGTCGAGATATCGA GCTTCAAAAACCGAGCCAGGGGGTGTGATATCTCATGTTACTCCTGTCCC TCTCATTTCTGCACTGCTGTGCTTCATTCTGGTCATATGCCATGTGGCAT GCCGATAACGCGACTGTAGGGTGCTCGGGACGACGGGGAGATGTAAACAC GTGACAGGTGCCGTGGCGGCGCGAGGGATGTCGATGGCGCAGGAGACTCT CATCCTCACAGAGGAGAACGTCATCACGGTGCTGGCCGAGGTGAGGCCAC GTACAGCTTGGACTACAGATGGGTCTCATCGACTGCAAAATCTGCATTGG CAGCAGCTCTATAGATTCGAGTTCTGTCGAGGGCCATACCTGCTTTTCAG GAAGGGTACACCGTTCATGTTACGGAAATATATTGAAGCCCACTCTTTGG TTGGCCGGAAAGCTCAGAGTCACCGCCTCATGGCCACACATCTCGTTTTG CAACCCCCATATCCGCCTGACTGTCAAGGCTCTTCCGCAGCCGAATGAAC CGCATTATTCCTCGCCACAAACAGGTCACCCGGAACCTCGCCTGTCGAAC CCCTCCTGCCCAAGGGCAAAGTTCTAGATTATAAGCAAGCCATTTTACTC GGTGAGGATAAGCCTACTATTAATATGTTTTGCCGCCGGAGGAGCTGCTG ACGCTGCCTGAACTGCAGAATGGGAGCTGGACCTGATGAATTCCTCGTGT CCAGGCATGGGAACAGCTTGGGGTCATTTGCGAGCCGAGGGCTCGGCCGC GGCTTCACGAGGTGCTCGTTTCCTTTGGTACCATGTTTCGCTCAGGGCTA TTAACGAGAGAATATTCCCTCTTCGGGCAATTCTCCCAACACAAAAATGC CGAAACAAGAAAGGGCTCAACGATGCACCCTGTGAGTGGAGCACGCATCT TCTGGAGCAGGTGGCTGCATTCCGGCGGGTTTTTCGTTGGCCACGAGTAT CCGGATGGTAGGTGCCCCGCTCGAAAGGACTTCAAGCTTGGCGGATGCTG CCCGTGCTGAACCGCCTCTTGCAGGCCCATGCCCAAAACCCAGGAACCTC ACCACAAGGCAGTTCAAAAGTGCGAAAGATAGGGCAGTTTCCCATGAACC ACGCCGCGAGCCAAGTGCACTGCCTCTTCCTCCCTATCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCCTACTCTCTCTCCATCCCTCCC TCCCTCTCCCCACGCCACCCAGCTACATCGAGTGTTGGTGGTTCGTCCCA TCGGTTTCACAGAATCACCGTATATGTAGGTCTACCCTCCGAATCGCGTT ACTTTTTTCTGGTACTCCTTCGGTGACCCCCCCGAAAAAAAATCGCGTGC TGCTTTCTGTCATTCATATGGACGTCCCCAAGCCCCCGTGCCTCCTCTCT CTTGTCACACATGAAAGGCGAAACGGGAGCTGAGCACCCTGTTCGGCAAC AACGCGGAGAACACGGCGGTTGGCATCACGGGGGACTGCGAGTTCGTCTG TCTCGACGGGCCGAGCGTGGTGGTGCGATTGACGGGGAGGTTCTGGCACG AGAAGGCCGTGGTAAGAAGGCAGGGATGAAGGACATAAAAACAGCGTCGG GGTGCCAATAGTGGAGTTGAGGTGCCGTTTTGCGTGGACGGGAACACCAA GGGAGGGAGCGAGGGGGCGGAGAGAGGGAAAGATGTGAAGATGCTTAGGG AGAAAAAGAGGGGGGGTTCACATCGTTTGGTGATCCACTCGAGGTACGGC TGACGCCTTCGAGCTTACGGCACGGTTTTCTGCATGTCTTGGACAGTCCC GCAGATGCCGAGGTGACGGAGGTAGCTTTCGCTTCGTCCTCTACTCCAAC CCGCTGTCTATCGTCAACGGCTCTCTCGCCCACGGAAACCGCTCTGTTCT TTCTTCCCTTTACGGCAACTCAGGTCCTTGCTCGCGTAGCCAACTTCGTG CAAACTCGCATCCCCGAGTGCGTTGACGTCGAGATCGAAGACCCAGCGCA GCTGGAGGACGCGGACCCTCAAGGGCGGGGACACGGGGGCGAGCTGTAGA TAATGGGGGACGTGTCACTAAAAAAAGCATGTCGTCATTGCGAACGGCTG ACCTGCAACACAAGGAAGGGACATCCTTATTCCTAGGTGTTGGCATGGTG CGTGCGTAGACGTCCACCTCTATCGTGTGTGGGTGAAGTCACCCTTGTGC AGTATTCTGTGGATGAGTGCGACGCACGCGTACTTCAAGACTTTTTGGTT GCGATTTTGTCGGGATCGGACGTACAAAATCACTTGCTGCGTCGATTTAC TGGGGGCGGACAGTGTCTCATTAGTCTTCGATGGGTGCTCGGGAAGCCAC CATCCCAGCCGCAACAGCAACTGCATGAGAAATTGGTGAGACGGCCGCCG ATACATCCCTTGGCGCTGTCGTCTCGCACCATGTTTGAAAAAGGCTTATC CATTTGACCACTCAGTAAGAGACGGCCGATGATGCATCCTTGGCGCTGTC ATCTCGCACC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:1084530..1087789-

>mRNA_P-fluviatile_contig8.14399.1 ID=mRNA_P-fluviatile_contig8.14399.1|Name=mRNA_P-fluviatile_contig8.14399.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1158bp|location=Sequence derived from alignment at P-fluviatile_contig8:1084530..1087789- (Porterinema fluviatile SAG_2381)
ATGGGCCTGCGTGAAGTAGCAACGATAGCAGTGTCAGCCATTCTCTGCTG
CAGCAATGGTAGATGTTACGTCTCCGCTTTTGCATTCACATCACCCCTTC
GGTCCCCTTCGTTCCAGCGGCAAAGCCCCATCTCGACTCTGAGGACGCAA
CTCCACCAGCAGCCGCAGCCTCAGCCGCAGCAGCTCAGATGGGCCTGCGT
GAAGTAGCAACGATAGCAGTGTCAGCCATTCTCTGCTGCAGCAATGGTAG
ATGTTACGTCTCCGCTTTTGCATTCACATCACCCCTTCGGTCCCCTTCGT
TCCAGCGGCAAAGCCCCATCTCGACTCTGAGGACGCAACTCCACCAGCAG
CCGCAGCCTCAGCCGCAGCAGCTCAGGGTGCTCGGGACGACGGGGAGATG
TAAACACGTGACAGGTGCCGTGGCGGCGCGAGGGATGTCGATGGCGCAGG
AGACTCTCATCCTCACAGAGGAGAACGTCATCACGGTGCTGGCCGAGGGT
GCTCGGGACGACGGGGAGATGTAAACACGTGACAGGTGCCGTGGCGGCGC
GAGGGATGTCGATGGCGCAGGAGACTCTCATCCTCACAGAGGAGAACGTC
ATCACGGTGCTGGCCGAGGCGAAACGGGAGCTGAGCACCCTGTTCGGCAA
CAACGCGGAGAACACGGCGGTTGGCATCACGGGGGACTGCGAGTTCGTCT
GTCTCGACGGGCCGAGCGTGGTGGTGCGATTGACGGGGAGGTTCTGGCAC
GAGAAGGCCGTGGCGAAACGGGAGCTGAGCACCCTGTTCGGCAACAACGC
GGAGAACACGGCGGTTGGCATCACGGGGGACTGCGAGTTCGTCTGTCTCG
ACGGGCCGAGCGTGGTGGTGCGATTGACGGGGAGGTTCTGGCACGAGAAG
GCCGTGGTCCTTGCTCGCGTAGCCAACTTCGTGCAAACTCGCATCCCCGA
GTGCGTTGACGTCGAGATCGAAGACCCAGCGCAGCTGGAGGACGCGGACC
CTCAAGGGCGGGGACACGGGGGCGAGCTGTAGGTCCTTGCTCGCGTAGCC
AACTTCGTGCAAACTCGCATCCCCGAGTGCGTTGACGTCGAGATCGAAGA
CCCAGCGCAGCTGGAGGACGCGGACCCTCAAGGGCGGGGACACGGGGGCG
AGCTGTAG
back to top