mRNA_P-fluviatile_contig8.14398.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14398.1
Unique NamemRNA_P-fluviatile_contig8.14398.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:1083538..1087914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size249
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14398.1prot_P-fluviatile_contig8.14398.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 1083538..1087882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.5155284-CDS-P-fluviatile_contig8:1083537..10836531622817215.5155284-CDS-P-fluviatile_contig8:1083537..1083653Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1083538..1083653 +
1693571533.4577892-CDS-P-fluviatile_contig8:1083537..10836531693571533.4577892-CDS-P-fluviatile_contig8:1083537..1083653Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1083538..1083653 +
1622817215.5269375-CDS-P-fluviatile_contig8:1087749..10878821622817215.5269375-CDS-P-fluviatile_contig8:1087749..1087882Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1087750..1087882 +
1693571533.4674714-CDS-P-fluviatile_contig8:1087749..10878821693571533.4674714-CDS-P-fluviatile_contig8:1087749..1087882Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 1087750..1087882 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817215.5432613-UTR-P-fluviatile_contig8:1087882..10879141622817215.5432613-UTR-P-fluviatile_contig8:1087882..1087914Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1087883..1087914 +
1693571533.6897109-UTR-P-fluviatile_contig8:1087882..10879141693571533.6897109-UTR-P-fluviatile_contig8:1087882..1087914Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 1087883..1087914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14398.1

>prot_P-fluviatile_contig8.14398.1 ID=prot_P-fluviatile_contig8.14398.1|Name=mRNA_P-fluviatile_contig8.14398.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=83bp
RRRVVDSDPPTAQVYATLQARVCRLALAHALSIAKPKLRPISNDRVPADE
CSLENGDHCDLIRGGCRSATRPPRTTFLAYAQ*
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mRNA from alignment at P-fluviatile_contig8:1083538..1087914+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14398.1 ID=mRNA_P-fluviatile_contig8.14398.1|Name=mRNA_P-fluviatile_contig8.14398.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4377bp|location=Sequence derived from alignment at P-fluviatile_contig8:1083538..1087914+ (Porterinema fluviatile SAG_2381)
CGGCGAAGAGTCGTAGATTCAGACCCACCGACGGCGCAAGTGTACGCAAC
ATTACAAGCGCGTGTGTGCCGGCTCGCACTCGCTCACGCGCTGTCCATAG
CGAAGCCAAAGTTAAGGTGGGTATGCTCTCTTCGAAGTCGCCGTCATCCT
AACCTAGATTAAAAGGACGTACTTGGGTGGGAGAACAGGTGGGTGTTTCT
GTCGAACTTCATTTTCAAACGACCGGGTAGAAACGGGAGGGAAGACCGAG
TTTTTTAGTCAAGCTGAGTGTGCCGATGCTAGGCGGTGATCCAGCGGCGC
GGGCTACTATGCCCTTGCTTTGCGCAAAAAAAAGCTTCTTGAAACGGCAA
TTTCTCAAGAGAGATCTGAATCCTGTCGGTACGCCAAACCGTCTGTGGCT
AGAAAAAAAAAACATAAGAATCTGACTGCCATTTGGATCTTACTAATTTG
ATTCATACAGATAGATAGATCCGATTATAGCCCCAACAAATCCCCCACCT
ACACCTCGGCAATCCTCGACAGGGGGTTTCCAAGTGAGCAGTGTCGTGAA
GCTCCGACAAACACAAAGTCCCGACCTCTTCGAGGTTTGAAAAAAAGTAG
TATAATCGGGCGCGACGAAGCGTTTGCAGGTGGTCGCCTTTCTGTCGCGT
GAAAAAGCGGATCGGGGTACGGTTGGGAGTTCCTGAGTGAGAACGCGTCG
CCGTCGTCACGGCGAAAGTTATAGCAGTAAAACATATCGCCTTTTATATC
GGATCAGACGACACGGCGTGTTCTAATCGAGGCGGGTAGAGACACACAAC
GAGGGCAGGCCCTTCTGAGCCACCCGACTCCGCTCTCTAGTTTCTAGCCA
ACGATAAGCGAAGCCAGAGTCGTCGTAGCCAAAGTAAGGTGCAACAGATT
ACACGGCGTGGTGTGTTTGATAAAGGCTTATCCATTTGACCACTCAGTCA
GCGCTGACTGGGTGGTCAAATGGATAAGCCTTTATCAAACATGGTGCGAG
ATGACAGCGCCAAGGATGCATCATCGGCCGTCTCTTACTGAGTGGTCAAA
TGGATAAGCCTTTTTCAAACATGGTGCGAGACGACAGCGCCAAGGGATGT
ATCGGCGGCCGTCTCACCAATTTCTCATGCAGTTGCTGTTGCGGCTGGGA
TGGTGGCTTCCCGAGCACCCATCGAAGACTAATGAGACACTGTCCGCCCC
CAGTAAATCGACGCAGCAAGTGATTTTGTACGTCCGATCCCGACAAAATC
GCAACCAAAAAGTCTTGAAGTACGCGTGCGTCGCACTCATCCACAGAATA
CTGCACAAGGGTGACTTCACCCACACACGATAGAGGTGGACGTCTACGCA
CGCACCATGCCAACACCTAGGAATAAGGATGTCCCTTCCTTGTGTTGCAG
GTCAGCCGTTCGCAATGACGACATGCTTTTTTTAGTGACACGTCCCCCAT
TATCTACAGCTCGCCCCCGTGTCCCCGCCCTTGAGGGTCCGCGTCCTCCA
GCTGCGCTGGGTCTTCGATCTCGACGTCAACGCACTCGGGGATGCGAGTT
TGCACGAAGTTGGCTACGCGAGCAAGGACCTGAGTTGCCGTAAAGGGAAG
AAAGAACAGAGCGGTTTCCGTGGGCGAGAGAGCCGTTGACGATAGACAGC
GGGTTGGAGTAGAGGACGAAGCGAAAGCTACCTCCGTCACCTCGGCATCT
GCGGGACTGTCCAAGACATGCAGAAAACCGTGCCGTAAGCTCGAAGGCGT
CAGCCGTACCTCGAGTGGATCACCAAACGATGTGAACCCCCCCTCTTTTT
CTCCCTAAGCATCTTCACATCTTTCCCTCTCTCCGCCCCCTCGCTCCCTC
CCTTGGTGTTCCCGTCCACGCAAAACGGCACCTCAACTCCACTATTGGCA
CCCCGACGCTGTTTTTATGTCCTTCATCCCTGCCTTCTTACCACGGCCTT
CTCGTGCCAGAACCTCCCCGTCAATCGCACCACCACGCTCGGCCCGTCGA
GACAGACGAACTCGCAGTCCCCCGTGATGCCAACCGCCGTGTTCTCCGCG
TTGTTGCCGAACAGGGTGCTCAGCTCCCGTTTCGCCTTTCATGTGTGACA
AGAGAGAGGAGGCACGGGGGCTTGGGGACGTCCATATGAATGACAGAAAG
CAGCACGCGATTTTTTTTCGGGGGGGTCACCGAAGGAGTACCAGAAAAAA
GTAACGCGATTCGGAGGGTAGACCTACATATACGGTGATTCTGTGAAACC
GATGGGACGAACCACCAACACTCGATGTAGCTGGGTGGCGTGGGGAGAGG
GAGGGAGGGATGGAGAGAGAGTAGGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGATAGGGAGGAAGAGGCAGTGCACTTGGCTCGCGGC
GTGGTTCATGGGAAACTGCCCTATCTTTCGCACTTTTGAACTGCCTTGTG
GTGAGGTTCCTGGGTTTTGGGCATGGGCCTGCAAGAGGCGGTTCAGCACG
GGCAGCATCCGCCAAGCTTGAAGTCCTTTCGAGCGGGGCACCTACCATCC
GGATACTCGTGGCCAACGAAAAACCCGCCGGAATGCAGCCACCTGCTCCA
GAAGATGCGTGCTCCACTCACAGGGTGCATCGTTGAGCCCTTTCTTGTTT
CGGCATTTTTGTGTTGGGAGAATTGCCCGAAGAGGGAATATTCTCTCGTT
AATAGCCCTGAGCGAAACATGGTACCAAAGGAAACGAGCACCTCGTGAAG
CCGCGGCCGAGCCCTCGGCTCGCAAATGACCCCAAGCTGTTCCCATGCCT
GGACACGAGGAATTCATCAGGTCCAGCTCCCATTCTGCAGTTCAGGCAGC
GTCAGCAGCTCCTCCGGCGGCAAAACATATTAATAGTAGGCTTATCCTCA
CCGAGTAAAATGGCTTGCTTATAATCTAGAACTTTGCCCTTGGGCAGGAG
GGGTTCGACAGGCGAGGTTCCGGGTGACCTGTTTGTGGCGAGGAATAATG
CGGTTCATTCGGCTGCGGAAGAGCCTTGACAGTCAGGCGGATATGGGGGT
TGCAAAACGAGATGTGTGGCCATGAGGCGGTGACTCTGAGCTTTCCGGCC
AACCAAAGAGTGGGCTTCAATATATTTCCGTAACATGAACGGTGTACCCT
TCCTGAAAAGCAGGTATGGCCCTCGACAGAACTCGAATCTATAGAGCTGC
TGCCAATGCAGATTTTGCAGTCGATGAGACCCATCTGTAGTCCAAGCTGT
ACGTGGCCTCACCTCGGCCAGCACCGTGATGACGTTCTCCTCTGTGAGGA
TGAGAGTCTCCTGCGCCATCGACATCCCTCGCGCCGCCACGGCACCTGTC
ACGTGTTTACATCTCCCCGTCGTCCCGAGCACCCTACAGTCGCGTTATCG
GCATGCCACATGGCATATGACCAGAATGAAGCACAGCAGTGCAGAAATGA
GAGGGACAGGAGTAACATGAGATATCACACCCCCTGGCTCGGTTTTTGAA
GCTCGATATCTCGACAGCGAGGGGTTGCCTAACATCGAACGATGCGTCAC
TACAATACTTTCGACTGCTTCTCTCGAAACAGCTCCGTTCGACGAAACCA
GCTCTTGGACGCGAAGCAATTGAGCGTTGAAAATCGACCCAGTGGGTGTG
ATATCTTCGCGACCTACGGTATCGAAACTCAGTGATTCAATTTGCAGTGA
TTATCGTCAGCATGCGGTTGAACTTTCTCTCAGGACGATAAGCTTACCTA
CAACAACGAGGACCACGCATGCGTCGAAAATCTTAAAAGGATTAACCGAT
TTGTCCATGATGGTGTCCTCGGGGTTACCCCCGCCGCTGTGCTGGAGTTG
ATCGAGTAGATCTATGAGCACCGCTGTGCGCATGTTCTTCATCACCGACT
CCCTCTTGAATACTTGCCACAGGGAGAGACACAGGAGCGCGGATGGACCA
ATAACTCAGAGACGAATAACAATTATGCTCTAATGACTTAGACTTTGAAA
CAGTGGAGCGGGGCTTTGGCGCTCTCGTACCTGAGCTGCTGCGGCTGAGG
CTGCGGCTGCTGGTGGAGTTGCGTCCTCAGAGTCGAGATGGGGCTTTGCC
GCTGGAACGAAGGGGACCGAAGGGGTGATGTGAATGCAAAAGCGGAGACG
TAACATCTACCATTGCTGCAGCAGAGAATGGCTGACACTGCTATCGTTGC
TACTTCACGCAGGCCCATCTCGAACGATCGTGTGCCGGCAGACGAGTGTT
CTCTGGAGAATGGCGACCATTGCGACCTTATTCGAGGGGGGTGCCGTAGC
GCCACGAGGCCCCCGAGAACGACTTTTCTAGCATACGCGCAATAGCGTCA
AAGGACAAGAGCAGAAGCTGGTGCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:1083538..1087914+

>mRNA_P-fluviatile_contig8.14398.1 ID=mRNA_P-fluviatile_contig8.14398.1|Name=mRNA_P-fluviatile_contig8.14398.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=498bp|location=Sequence derived from alignment at P-fluviatile_contig8:1083538..1087914+ (Porterinema fluviatile SAG_2381)
CGGCGAAGAGTCGTAGATTCAGACCCACCGACGGCGCAAGTGTACGCAAC
ATTACAAGCGCGTGTGTGCCGGCTCGCACTCGCTCACGCGCTGTCCATAG
CGAAGCCAAAGTTAAGCGGCGAAGAGTCGTAGATTCAGACCCACCGACGG
CGCAAGTGTACGCAACATTACAAGCGCGTGTGTGCCGGCTCGCACTCGCT
CACGCGCTGTCCATAGCGAAGCCAAAGTTAAGGCCCATCTCGAACGATCG
TGTGCCGGCAGACGAGTGTTCTCTGGAGAATGGCGACCATTGCGACCTTA
TTCGAGGGGGGTGCCGTAGCGCCACGAGGCCCCCGAGAACGACTTTTCTA
GCATACGCGCAATAGGCCCATCTCGAACGATCGTGTGCCGGCAGACGAGT
GTTCTCTGGAGAATGGCGACCATTGCGACCTTATTCGAGGGGGGTGCCGT
AGCGCCACGAGGCCCCCGAGAACGACTTTTCTAGCATACGCGCAATAG
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