mRNA_P-fluviatile_contig8.14391.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14391.1
Unique NamemRNA_P-fluviatile_contig8.14391.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14391.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.060e-27
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 AVLMRAHDVLNALESVTVFKSQASYSRVRVEDMGSDLDSAISLLDLQQSR----EVVDGAA-GVTQGAHRAVLDWSTGVIVKLAAALPE 252
            A  MRAHDVL+ALE VT+F++QA+ S  R+ED+GSDLDSAISLLDLQQ +    E  DGAA GVTQG HRAVLDWSTGVIVKLAAALP+
Sbjct:   27 AAEMRAHDVLDALERVTLFRAQAADSNRRLEDIGSDLDSAISLLDLQQQQCREAEHPDGAATGVTQGVHRAVLDWSTGVIVKLAAALPK 115
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BLAST of mRNA_P-fluviatile_contig8.14391.1 vs. uniprot
Match: D8LSU4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.230e-26
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:   10 MRAHDVLNALESVTVFKSQASYSRVRVEDMGSDLDSAISLLDLQQS---REVVDGAA-GVTQGAHRAVLDWSTGVIVKLAAALPE 252
            MRAHDVL+ALE VT+F++QA+ S  R+ED+GSDLDSAISLLDLQQ     E  DGA  GVTQG HRAVLDWSTGVIVKLAAALP+
Sbjct:    1 MRAHDVLDALERVTLFRAQAADSNRRLEDIGSDLDSAISLLDLQQQCREAEHPDGAVTGVTQGVHRAVLDWSTGVIVKLAAALPK 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIT9_9PHAE5.060e-2773.03Urb2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LSU4_ECTSI3.230e-2674.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:995097..996118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size323
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14391.1prot_P-fluviatile_contig8.14391.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 995097..996109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817228.5114508-CDS-P-fluviatile_contig8:995096..9952541622817228.5114508-CDS-P-fluviatile_contig8:995096..995254Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 995097..995254 -
1693571578.8622649-CDS-P-fluviatile_contig8:995096..9952541693571578.8622649-CDS-P-fluviatile_contig8:995096..995254Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 995097..995254 -
1622817228.5243685-CDS-P-fluviatile_contig8:995955..9961091622817228.5243685-CDS-P-fluviatile_contig8:995955..996109Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 995956..996109 -
1693571578.8720026-CDS-P-fluviatile_contig8:995955..9961091693571578.8720026-CDS-P-fluviatile_contig8:995955..996109Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 995956..996109 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817228.5366375-UTR-P-fluviatile_contig8:996109..9961181622817228.5366375-UTR-P-fluviatile_contig8:996109..996118Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 996110..996118 -
1693571578.881783-UTR-P-fluviatile_contig8:996109..9961181693571578.881783-UTR-P-fluviatile_contig8:996109..996118Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 996110..996118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14391.1

>prot_P-fluviatile_contig8.14391.1 ID=prot_P-fluviatile_contig8.14391.1|Name=mRNA_P-fluviatile_contig8.14391.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
MRAHDVLNALESVTVFKSQASYSRVRVEDMGSDLDSAISLLDLQQSREVV
DGAAGVTQGAHRAVLDWSTGVIVKLAAALPELVPPPAVAGAEGGGDSTGE
KHQR
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mRNA from alignment at P-fluviatile_contig8:995097..996118-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14391.1 ID=mRNA_P-fluviatile_contig8.14391.1|Name=mRNA_P-fluviatile_contig8.14391.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1022bp|location=Sequence derived from alignment at P-fluviatile_contig8:995097..996118- (Porterinema fluviatile SAG_2381)
GCCGTGCTGATGCGGGCCCACGATGTACTCAATGCCCTGGAAAGCGTCAC
AGTGTTTAAATCCCAAGCATCATACTCCCGTGTACGCGTGGAGGACATGG
GCAGCGACCTGGATAGCGCGATCTCGTTGCTGGACCTTCAACAGTCCCGT
GAAGTTGTGGACGGTGTGTTGCCGACGCTTTTTTGGGTGGATTGCGTTGC
TACTGCTGCAGCAACTGCTGTGCGACTGCAGCTGTAACCTCGTCTCCCAT
TTCATCGCTTGTCTAACCCAAAATGTGTATACCAGGAGATAAACTTGTCA
ATGAGGGAAGAAATGCTTGTAATTTCGGTTTGGCAGCGGTCATCATGCGT
TCACGAGGTGTCGATCTTCTCCGCTGCTCTTCGGGGGCCACCATAGCTGT
TCAATGTTTCTCCGAACGAAGGCCACCTCTTCCACGGCACTGTTACTTCT
CTAGACGATCGAGTAGGCATTAGTCACGATATGTAACTCGCGAAGGCCTG
TGTTGCATCGTCTACCTGTTGGGCACAAAATCAGTGCTGCTGCCCGCCTC
TGGTTCACGCTTGATACCCGTGGTTCCGCGAGTCGAGCAGCGAGCTCTCC
GATTTCGTTCGCCCCTTGTGTTGGTAGACTTCCGCTTGCTTAGCTTTCCA
TTCTCCAAATGGTCTTCCCGGCAAATCCACTTTGCAGCCGTTGCATTTGT
GTTCGATATCTTGAAAACCGTATCCCTCGACGGGAAGGACTTCTTGACCT
CGCATTTTCGACACCCTCTGATCGCAGATAAAAAAAGTAACCTACACCGC
CCCACACCTTGCTCTCCACACCAACCTTACGCTTCCCCCCTCCACCCCTC
CTTCCGGCAAGCAGGTGCGGCGGGCGTAACCCAGGGCGCCCACCGTGCGG
TCCTCGATTGGTCCACTGGAGTCATCGTCAAGCTCGCGGCGGCGCTGCCA
GAGCTGGTCCCTCCTCCTGCGGTCGCCGGCGCCGAAGGCGGCGGCGACAG
CACCGGCGAAAAACACCAGCGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:995097..996118-

>mRNA_P-fluviatile_contig8.14391.1 ID=mRNA_P-fluviatile_contig8.14391.1|Name=mRNA_P-fluviatile_contig8.14391.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig8:995097..996118- (Porterinema fluviatile SAG_2381)
ATGCGGGCCCACGATGTACTCAATGCCCTGGAAAGCGTCACAGTGTTTAA
ATCCCAAGCATCATACTCCCGTGTACGCGTGGAGGACATGGGCAGCGACC
TGGATAGCGCGATCTCGTTGCTGGACCTTCAACAGTCCCGTGAAGTTGTG
GACGATGCGGGCCCACGATGTACTCAATGCCCTGGAAAGCGTCACAGTGT
TTAAATCCCAAGCATCATACTCCCGTGTACGCGTGGAGGACATGGGCAGC
GACCTGGATAGCGCGATCTCGTTGCTGGACCTTCAACAGTCCCGTGAAGT
TGTGGACGGTGCGGCGGGCGTAACCCAGGGCGCCCACCGTGCGGTCCTCG
ATTGGTCCACTGGAGTCATCGTCAAGCTCGCGGCGGCGCTGCCAGAGCTG
GTCCCTCCTCCTGCGGTCGCCGGCGCCGAAGGCGGCGGCGACAGCACCGG
CGAAAAACACCAGCGAGTGCGGCGGGCGTAACCCAGGGCGCCCACCGTGC
GGTCCTCGATTGGTCCACTGGAGTCATCGTCAAGCTCGCGGCGGCGCTGC
CAGAGCTGGTCCCTCCTCCTGCGGTCGCCGGCGCCGAAGGCGGCGGCGAC
AGCACCGGCGAAAAACACCAGCGA
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