mRNA_P-fluviatile_contig8.14382.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14382.1
Unique NamemRNA_P-fluviatile_contig8.14382.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14382.1 vs. uniprot
Match: D7FWL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWL1_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 6.330e-21
Identity = 86/125 (68.80%), Postives = 96/125 (76.80%), Query Frame = 1 
Query:    1 EYKKLKAKMKKLQKMKHDLQNPGQSLKHKMEPDAYKQAKHKYXXXXXXXXXXXXXXXXXXXXXXXRRLKKLSKLKKMLKGEKHSKPRG-GMMAPVGHDTPRHATVPDADDVGEGWGDSSSECSSV 372
            EYKKLKAKM+K+QK+K DLQNPGQ++K KM+PD YK+AK     XXXXXXXXXXXXXXXXXXXXX RLKKLSKLKKM+KGE HSKP+  GMM P GH   RH   PD        G SSS+CSSV
Sbjct:    7 EYKKLKAKMRKVQKLKRDLQNPGQAMKRKMQPDIYKKAKRTAHQXXXXXXXXXXXXXXXXXXXXXXRLKKLSKLKKMMKGEVHSKPKPRGMMPPEGHSGARHGAAPDD-------GYSSSDCSSV 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWL1_ECTSI6.330e-2168.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:893801..896180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_002320.1
Exons2
Model size1782
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14382.1prot_P-fluviatile_contig8.14382.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 895100..896156 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817227.3333504-UTR-P-fluviatile_contig8:893800..8950991622817227.3333504-UTR-P-fluviatile_contig8:893800..895099Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 893801..895099 -
1693571577.570654-UTR-P-fluviatile_contig8:893800..8950991693571577.570654-UTR-P-fluviatile_contig8:893800..895099Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 893801..895099 -
1622817227.3680427-UTR-P-fluviatile_contig8:896156..8961801622817227.3680427-UTR-P-fluviatile_contig8:896156..896180Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 896157..896180 -
1693571577.5972733-UTR-P-fluviatile_contig8:896156..8961801693571577.5972733-UTR-P-fluviatile_contig8:896156..896180Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 896157..896180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817227.344086-CDS-P-fluviatile_contig8:895099..8953391622817227.344086-CDS-P-fluviatile_contig8:895099..895339Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 895100..895339 -
1693571577.579213-CDS-P-fluviatile_contig8:895099..8953391693571577.579213-CDS-P-fluviatile_contig8:895099..895339Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 895100..895339 -
1622817227.356806-CDS-P-fluviatile_contig8:895937..8961561622817227.356806-CDS-P-fluviatile_contig8:895937..896156Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 895938..896156 -
1693571577.5875592-CDS-P-fluviatile_contig8:895937..8961561693571577.5875592-CDS-P-fluviatile_contig8:895937..896156Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 895938..896156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14382.1

>prot_P-fluviatile_contig8.14382.1 ID=prot_P-fluviatile_contig8.14382.1|Name=mRNA_P-fluviatile_contig8.14382.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=153bp
MKKLQKMKHDLQNPGQSLKHKMEPDAYKQAKHKYHQASNPGQTLKQKLQP
DAYKKIKRRLKKLSKLKKMLKGEKHSKPRGGMMAPVGHDTPRHATVPDAD
DVGEGWGDSSSECSSVSSGSDLSDASDLSDLSDSDIGGGDEGEGGGGDVS
SS*
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mRNA from alignment at P-fluviatile_contig8:893801..896180-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14382.1 ID=mRNA_P-fluviatile_contig8.14382.1|Name=mRNA_P-fluviatile_contig8.14382.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2380bp|location=Sequence derived from alignment at P-fluviatile_contig8:893801..896180- (Porterinema fluviatile SAG_2381)
GAGTACAAGAAGCTCAAGGCGAAGATGAAGAAGCTGCAGAAGATGAAGCA
CGATCTGCAGAACCCGGGACAGTCCCTCAAGCACAAGATGGAGCCGGACG
CCTACAAGCAGGCCAAGCACAAGTACCACCAGGCATCCAACCCGGGGCAG
ACACTGAAGCAAAAGCTCCAGCCCGACGCCTACAAGAAGATCAAGCGCAG
GCTGAAGAAGCTCTCCAAGCTGAAGAAGATGCTGAAGGGCGAGGTGAGTC
AAGGGCGAACGTCCACACATCGTTTGAGACAAATTGTGGGGCATGTCGTG
TCGAAAATACACATGTCTCGTGAAATTTATTCTCGTATGCAGTTTCACAT
ACTTTGGTTCACATGGTTGTGGGCTGCTGATTCGGAGGTGGGCTTCGATG
AATGGCGTCCCGTTCATTGTCGTGCCGGGGACGGGATGCGTGGGCTGGCG
GTTCAGCGACGACGGTGCACTGCTTAGGTCTTCGCCCTTGGAAGGGAGGG
CAGGCGAACACACACTTCTCCCGCGCTGGTCACCGCGTTGAACACGAACC
CCAGAGAGCATGATATCTACCGCGAGGCGCGAGGAAATACGAAAGCATCA
ACTGTGGTGACCAGCAGAACGCAAACAACCACACCGAGATACTGGTCTTG
CAGATTGGGAACACGGCCATCGGAACGCCAACGCGCTCTCGTGAACTCAT
CTTCATGCTTCACCCCAGAAACGATAATAACACTCTGTGACGCTTGTGTA
TTTGTACCACCCCTACCCCCACCATACCATCCTTCTTGCGTTCTCGGTGT
ACTATCGCCCTCGTGATCCGCCTTCCTAATGTGGCCTCCAGAAGCACTCG
AAGCCCCGAGGAGGGATGATGGCCCCTGTGGGTCACGACACGCCCCGTCA
CGCGACTGTCCCCGATGCCGACGACGTCGGCGAGGGGTGGGGGGACTCAA
GCTCGGAGTGCTCCAGCGTCAGCTCTGGGTCCGATCTGTCCGACGCTTCC
GACCTGTCGGATTTGTCCGACTCGGACATTGGTGGCGGTGATGAAGGCGA
AGGCGGTGGCGGCGATGTGTCGTCCAGCTAGCTGAATGCCTGATCCGGAT
GCGTACACAAAACAGTGAATGCGGAAAATATAGACGGGGCTAAGGTGTCT
CGGGGTCCTGTCGGTGCAGAGGTTCTTCGTGCCTCTGAACCATTCGTTGA
TGATTACTTCGTGCATTTTCTTCTGGTGCCCCGGAGTATTGTGCTTTTTC
CCCCCTTCCCTATTCTGGGAAGGAATCTTTTTCGCGAGCTGCCTGCGCCG
AGCGCCCTATTTGTTACTGCATCTTTGTCAAGCGGGACAGCGATTTACCG
CTGCACCCACATTGAGGTGACACCCGTGGGCACGACTTCCACCGTGCATG
TGCCGCACCTTTACGCTTGCACGCATGCGGGGGCGCCAACTTCTCCAATG
CGCCAGTCAGATTTGTTTCTTCCGCCTCTTGACTTCAGCCTTTCTCACCG
CGGTGACGATACACACCCGCATCGGCGGTGACTTCACCACGCACTTCTGT
TCTGTAGCCTTTGGAGAGGGTTGCAAGCGACGGGCTGGAGCTCGTCGGGC
ATGGTTCTCTTTCTACGTGCGGTTGTTCGTTCGTTTTCTTATTTTTTTGC
GTTCGGCAGCCCCCTGAGTCCGGTCTTCGACCTAAATAGTAAACTGAAAT
CATGGTTCGTTCAAGTTCTATCTGATCCAGGACATGCTGCGACTCTATCC
GGAGACGACTGGAAGAGCAGAAGCGGTTAGTGGTGTATATTACCCGACAT
TTCAAACCGCAAGTTGCGCGTCAGATTCCCTGTAGAATGTGTGGCATCGC
CATTCAGATGCGTGATTGTTTAAAGTGGCGGACGGCTACCATATCTTGAC
AAGAAGGCGATGGCGACAACGACGCTCAGGAAAGGCTTGGCAGGAGCTGC
TGGCTCAAATCTACTAAGACAACATTAACTAGCGGTTACGATTTAAGCAT
CAGTACCGGAGCATAAGTATCCCCCTCTCCAGATGACCTACTTGCCTGTT
GGTGGGCTGGTGGAAGGGTCGCGGTTGATGCCGAGGAGCACCGGACATCG
GGGAGATGTTTCATCCGATGGTTGGAAGTCCCTCGCCTGCCCCCTTCGGG
ACGCTTTCGAAAGCATGTTGTTTGGAGGTATCGGGCCCCGGTCGTGCTTT
TGCTTGCTCATTGAGTGTCCCCGACAGGTCAAAGGCCCCAAAGGAAGCCA
ATATGGGTTCGGCAGGCTCTCTCGACTTTGCTCGAAATCGCATTATTCTC
GACCTTTCACCCCCCGTCTACCACCTTCGGTGTTGCCTGTCTAGGTTTAC
CAAGAGTCTCTAAAAAATCATGGCCTAAAT
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:893801..896180-

>mRNA_P-fluviatile_contig8.14382.1 ID=mRNA_P-fluviatile_contig8.14382.1|Name=mRNA_P-fluviatile_contig8.14382.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=918bp|location=Sequence derived from alignment at P-fluviatile_contig8:893801..896180- (Porterinema fluviatile SAG_2381)
ATGAAGAAGCTGCAGAAGATGAAGCACGATCTGCAGAACCCGGGACAGTC
CCTCAAGCACAAGATGGAGCCGGACGCCTACAAGCAGGCCAAGCACAAGT
ACCACCAGGCATCCAACCCGGGGCAGACACTGAAGCAAAAGCTCCAGCCC
GACGCCTACAAGAAGATCAAGCGCAGGCTGAAGAAGCTCTCCAAGCTGAA
GAAGATGCTGAAGGGCGAGATGAAGAAGCTGCAGAAGATGAAGCACGATC
TGCAGAACCCGGGACAGTCCCTCAAGCACAAGATGGAGCCGGACGCCTAC
AAGCAGGCCAAGCACAAGTACCACCAGGCATCCAACCCGGGGCAGACACT
GAAGCAAAAGCTCCAGCCCGACGCCTACAAGAAGATCAAGCGCAGGCTGA
AGAAGCTCTCCAAGCTGAAGAAGATGCTGAAGGGCGAGAAGCACTCGAAG
CCCCGAGGAGGGATGATGGCCCCTGTGGGTCACGACACGCCCCGTCACGC
GACTGTCCCCGATGCCGACGACGTCGGCGAGGGGTGGGGGGACTCAAGCT
CGGAGTGCTCCAGCGTCAGCTCTGGGTCCGATCTGTCCGACGCTTCCGAC
CTGTCGGATTTGTCCGACTCGGACATTGGTGGCGGTGATGAAGGCGAAGG
CGGTGGCGGCGATGTGTCGTCCAGCTAGAAGCACTCGAAGCCCCGAGGAG
GGATGATGGCCCCTGTGGGTCACGACACGCCCCGTCACGCGACTGTCCCC
GATGCCGACGACGTCGGCGAGGGGTGGGGGGACTCAAGCTCGGAGTGCTC
CAGCGTCAGCTCTGGGTCCGATCTGTCCGACGCTTCCGACCTGTCGGATT
TGTCCGACTCGGACATTGGTGGCGGTGATGAAGGCGAAGGCGGTGGCGGC
GATGTGTCGTCCAGCTAG
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