mRNA_P-fluviatile_contig8.14380.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14380.1
Unique NamemRNA_P-fluviatile_contig8.14380.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:886838..887296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.966727-CDS-P-fluviatile_contig8:886837..8872961622817217.966727-CDS-P-fluviatile_contig8:886837..887296Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 886838..887296 +
1693571543.3559492-CDS-P-fluviatile_contig8:886837..8872961693571543.3559492-CDS-P-fluviatile_contig8:886837..887296Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 886838..887296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14380.1prot_P-fluviatile_contig8.14380.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 886838..887296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14380.1

>prot_P-fluviatile_contig8.14380.1 ID=prot_P-fluviatile_contig8.14380.1|Name=mRNA_P-fluviatile_contig8.14380.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=153bp
GSKTRVGGGGGGPGRGAEGGAGDPSVLEACIDLFRRSSDTSSVWNKAGLH
RPAIVPPMARSHSGDGGLPGGPGTLMPPGPKYHVHQNHHHSHLNHLHLHL
QQQQAPRLSPPPHHHQPQRHNQHHQHQQATRVSPMNGGGDGGGVGENREI
PMA
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mRNA from alignment at P-fluviatile_contig8:886838..887296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14380.1 ID=mRNA_P-fluviatile_contig8.14380.1|Name=mRNA_P-fluviatile_contig8.14380.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=459bp|location=Sequence derived from alignment at P-fluviatile_contig8:886838..887296+ (Porterinema fluviatile SAG_2381)
GGCAGCAAGACCAGGGTCGGCGGCGGTGGTGGCGGCCCAGGCAGAGGAGC
GGAGGGCGGGGCCGGAGATCCGTCCGTACTAGAGGCATGTATCGACCTCT
TTCGCCGGTCCTCCGACACGTCCTCCGTCTGGAACAAGGCTGGGCTACAC
CGCCCCGCGATCGTTCCCCCGATGGCGAGATCCCACTCCGGAGACGGCGG
CCTGCCCGGCGGACCAGGTACGCTGATGCCCCCTGGGCCGAAGTACCACG
TCCACCAAAACCACCACCACAGCCACCTCAACCACCTCCACCTCCACCTC
CAGCAACAACAAGCACCGCGCTTGTCCCCGCCGCCCCATCACCATCAGCC
TCAGCGCCATAACCAGCACCATCAGCATCAGCAGGCTACGCGTGTTTCGC
CCATGAACGGCGGCGGCGATGGCGGTGGTGTAGGAGAAAATAGGGAGATA
CCTATGGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:886838..887296+

>mRNA_P-fluviatile_contig8.14380.1 ID=mRNA_P-fluviatile_contig8.14380.1|Name=mRNA_P-fluviatile_contig8.14380.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=918bp|location=Sequence derived from alignment at P-fluviatile_contig8:886838..887296+ (Porterinema fluviatile SAG_2381)
GGCAGCAAGACCAGGGTCGGCGGCGGTGGTGGCGGCCCAGGCAGAGGAGC
GGAGGGCGGGGCCGGAGATCCGTCCGTACTAGAGGCATGTATCGACCTCT
TTCGCCGGTCCTCCGACACGTCCTCCGTCTGGAACAAGGCTGGGCTACAC
CGCCCCGCGATCGTTCCCCCGATGGCGAGATCCCACTCCGGAGACGGCGG
CCTGCCCGGCGGACCAGGTACGCTGATGCCCCCTGGGCCGAAGTACCACG
TCCACCAAAACCACCACCACAGCCACCTCAACCACCTCCACCTCCACCTC
CAGCAACAACAAGCACCGCGCTTGTCCCCGCCGCCCCATCACCATCAGCC
TCAGCGCCATAACCAGCACCATCAGCATCAGCAGGCTACGCGTGTTTCGC
CCATGAACGGCGGCGGCGATGGCGGTGGTGTAGGAGAAAATAGGGAGATA
CCTATGGCCGGCAGCAAGACCAGGGTCGGCGGCGGTGGTGGCGGCCCAGG
CAGAGGAGCGGAGGGCGGGGCCGGAGATCCGTCCGTACTAGAGGCATGTA
TCGACCTCTTTCGCCGGTCCTCCGACACGTCCTCCGTCTGGAACAAGGCT
GGGCTACACCGCCCCGCGATCGTTCCCCCGATGGCGAGATCCCACTCCGG
AGACGGCGGCCTGCCCGGCGGACCAGGTACGCTGATGCCCCCTGGGCCGA
AGTACCACGTCCACCAAAACCACCACCACAGCCACCTCAACCACCTCCAC
CTCCACCTCCAGCAACAACAAGCACCGCGCTTGTCCCCGCCGCCCCATCA
CCATCAGCCTCAGCGCCATAACCAGCACCATCAGCATCAGCAGGCTACGC
GTGTTTCGCCCATGAACGGCGGCGGCGATGGCGGTGGTGTAGGAGAAAAT
AGGGAGATACCTATGGCC
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