mRNA_P-fluviatile_contig8.14367.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14367.1
Unique NamemRNA_P-fluviatile_contig8.14367.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:783155..783593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size440
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.8696258-UTR-P-fluviatile_contig8:783154..7832031622817217.8696258-UTR-P-fluviatile_contig8:783154..783203Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 783155..783203 +
1693571543.1856773-UTR-P-fluviatile_contig8:783154..7832031693571543.1856773-UTR-P-fluviatile_contig8:783154..783203Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 783155..783203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.8798153-CDS-P-fluviatile_contig8:783203..7835931622817217.8798153-CDS-P-fluviatile_contig8:783203..783593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 783204..783593 +
1693571543.1947887-CDS-P-fluviatile_contig8:783203..7835931693571543.1947887-CDS-P-fluviatile_contig8:783203..783593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 783204..783593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14367.1prot_P-fluviatile_contig8.14367.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 783204..783593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14367.1

>prot_P-fluviatile_contig8.14367.1 ID=prot_P-fluviatile_contig8.14367.1|Name=mRNA_P-fluviatile_contig8.14367.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=130bp
MRSKWFGEILGSERGNDPKNRTLPSMRRKVPNNQQHNVGLEQKNTHSREL
HCWSRPHRGGKAYCGEKTGRVALASKTTFTTISPARLGSHDFRIQPCAEV
RLACRTCLPCSTAKRQTLHWITTHEASYHQ
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mRNA from alignment at P-fluviatile_contig8:783155..783593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14367.1 ID=mRNA_P-fluviatile_contig8.14367.1|Name=mRNA_P-fluviatile_contig8.14367.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=439bp|location=Sequence derived from alignment at P-fluviatile_contig8:783155..783593+ (Porterinema fluviatile SAG_2381)
CACCACCCGCCGGTTCAGGGTCTTTACCTGAAGGGCACACAAGATCAAGA
TGCGAAGTAAGTGGTTCGGCGAAATACTCGGGTCGGAGCGAGGCAATGAC
CCGAAAAACAGGACACTCCCCTCAATGAGACGAAAAGTGCCAAATAATCA
ACAGCACAACGTGGGCTTGGAGCAGAAAAACACCCACTCTCGAGAGCTGC
ATTGCTGGTCGCGGCCGCATCGCGGCGGCAAAGCATACTGTGGTGAAAAA
ACGGGGCGGGTCGCGCTTGCTTCAAAGACCACGTTCACCACGATTTCACC
CGCCCGGTTGGGTTCGCATGACTTCCGCATTCAGCCCTGTGCGGAGGTGC
GGCTTGCATGCCGAACTTGTCTACCCTGCAGCACGGCTAAACGTCAAACT
CTCCACTGGATCACAACGCATGAAGCATCCTATCATCAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:783155..783593+

>mRNA_P-fluviatile_contig8.14367.1 ID=mRNA_P-fluviatile_contig8.14367.1|Name=mRNA_P-fluviatile_contig8.14367.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=780bp|location=Sequence derived from alignment at P-fluviatile_contig8:783155..783593+ (Porterinema fluviatile SAG_2381)
ATGCGAAGTAAGTGGTTCGGCGAAATACTCGGGTCGGAGCGAGGCAATGA
CCCGAAAAACAGGACACTCCCCTCAATGAGACGAAAAGTGCCAAATAATC
AACAGCACAACGTGGGCTTGGAGCAGAAAAACACCCACTCTCGAGAGCTG
CATTGCTGGTCGCGGCCGCATCGCGGCGGCAAAGCATACTGTGGTGAAAA
AACGGGGCGGGTCGCGCTTGCTTCAAAGACCACGTTCACCACGATTTCAC
CCGCCCGGTTGGGTTCGCATGACTTCCGCATTCAGCCCTGTGCGGAGGTG
CGGCTTGCATGCCGAACTTGTCTACCCTGCAGCACGGCTAAACGTCAAAC
TCTCCACTGGATCACAACGCATGAAGCATCCTATCATCAAATGCGAAGTA
AGTGGTTCGGCGAAATACTCGGGTCGGAGCGAGGCAATGACCCGAAAAAC
AGGACACTCCCCTCAATGAGACGAAAAGTGCCAAATAATCAACAGCACAA
CGTGGGCTTGGAGCAGAAAAACACCCACTCTCGAGAGCTGCATTGCTGGT
CGCGGCCGCATCGCGGCGGCAAAGCATACTGTGGTGAAAAAACGGGGCGG
GTCGCGCTTGCTTCAAAGACCACGTTCACCACGATTTCACCCGCCCGGTT
GGGTTCGCATGACTTCCGCATTCAGCCCTGTGCGGAGGTGCGGCTTGCAT
GCCGAACTTGTCTACCCTGCAGCACGGCTAAACGTCAAACTCTCCACTGG
ATCACAACGCATGAAGCATCCTATCATCAA
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