mRNA_P-fluviatile_contig8.14357.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14357.1
Unique NamemRNA_P-fluviatile_contig8.14357.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:705599..705911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.8417826-CDS-P-fluviatile_contig8:705598..7059101622817217.8417826-CDS-P-fluviatile_contig8:705598..705910Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 705599..705910 +
1693571543.1761103-CDS-P-fluviatile_contig8:705598..7059101693571543.1761103-CDS-P-fluviatile_contig8:705598..705910Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 705599..705910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14357.1prot_P-fluviatile_contig8.14357.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 705599..705910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14357.1

>prot_P-fluviatile_contig8.14357.1 ID=prot_P-fluviatile_contig8.14357.1|Name=mRNA_P-fluviatile_contig8.14357.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
TRSPGRHRTRADHALLGVSGAKFGRGGRPRGAIDWGFLAPLVAAPLGADV
HLAGESMPRTELRLDPVGGRGGGCGDGSDGGRGGIVYEGERRTDGAAPHA
TPLV
back to top

mRNA from alignment at P-fluviatile_contig8:705599..705911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14357.1 ID=mRNA_P-fluviatile_contig8.14357.1|Name=mRNA_P-fluviatile_contig8.14357.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=313bp|location=Sequence derived from alignment at P-fluviatile_contig8:705599..705911+ (Porterinema fluviatile SAG_2381)
ACGAGATCGCCCGGGCGCCACAGGACGCGCGCGGACCATGCCCTCCTCGG
CGTGTCGGGCGCAAAATTCGGGCGTGGTGGCCGTCCCCGGGGCGCAATAG
ATTGGGGCTTTCTCGCACCCCTGGTGGCCGCACCTCTTGGTGCGGATGTC
CACTTGGCCGGGGAGAGCATGCCGCGCACAGAACTCCGGCTTGATCCCGT
TGGCGGCCGCGGCGGCGGCTGCGGCGACGGCAGCGATGGCGGCCGCGGCG
GCATTGTTTACGAAGGCGAACGAAGGACGGACGGTGCAGCCCCGCATGCC
ACACCGCTTGTTG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:705599..705911+

>mRNA_P-fluviatile_contig8.14357.1 ID=mRNA_P-fluviatile_contig8.14357.1|Name=mRNA_P-fluviatile_contig8.14357.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig8:705599..705911+ (Porterinema fluviatile SAG_2381)
ACGAGATCGCCCGGGCGCCACAGGACGCGCGCGGACCATGCCCTCCTCGG
CGTGTCGGGCGCAAAATTCGGGCGTGGTGGCCGTCCCCGGGGCGCAATAG
ATTGGGGCTTTCTCGCACCCCTGGTGGCCGCACCTCTTGGTGCGGATGTC
CACTTGGCCGGGGAGAGCATGCCGCGCACAGAACTCCGGCTTGATCCCGT
TGGCGGCCGCGGCGGCGGCTGCGGCGACGGCAGCGATGGCGGCCGCGGCG
GCATTGTTTACGAAGGCGAACGAAGGACGGACGGTGCAGCCCCGCATGCC
ACACCGCTTGTTACGAGATCGCCCGGGCGCCACAGGACGCGCGCGGACCA
TGCCCTCCTCGGCGTGTCGGGCGCAAAATTCGGGCGTGGTGGCCGTCCCC
GGGGCGCAATAGATTGGGGCTTTCTCGCACCCCTGGTGGCCGCACCTCTT
GGTGCGGATGTCCACTTGGCCGGGGAGAGCATGCCGCGCACAGAACTCCG
GCTTGATCCCGTTGGCGGCCGCGGCGGCGGCTGCGGCGACGGCAGCGATG
GCGGCCGCGGCGGCATTGTTTACGAAGGCGAACGAAGGACGGACGGTGCA
GCCCCGCATGCCACACCGCTTGTT
back to top