mRNA_P-fluviatile_contig8.14355.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14355.1
Unique NamemRNA_P-fluviatile_contig8.14355.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: A0A836CM67_9STRA (Tctex-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM67_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.380e-60
Identity = 83/120 (69.17%), Postives = 101/120 (84.17%), Query Frame = 1
Query:    1 MDIETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDKMREQQGSRMKCVVTVFGLSL 360
            MDIE SEQ AF+PEQVE ILMA +D +L+ EVYVE K  HWV++ICD+ M  LH L+KPFKY+V+  ++QKNGAG H GHSA+WDI +DN+CQV+WPTDKMREQQGSR+KC+VT FGLSL
Sbjct:    1 MDIEASEQTAFLPEQVEGILMAAIDAVLKNEVYVEAKAQHWVDSICDKCMAGLHSLNKPFKYIVTAAVIQKNGAGVHAGHSAFWDIGSDNLCQVSWPTDKMREQQGSRIKCIVTAFGLSL 120          
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: D8LG53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG53_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 2.470e-60
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1
Query:    1 MDIETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQV 282
            MDIETSEQLAFIPEQVESILM VVDGILRTEVY+EEKVSHWVN ICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDN+CQV
Sbjct:    1 MDIETSEQLAFIPEQVESILMTVVDGILRTEVYLEEKVSHWVNTICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNICQV 94          
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: A0A7S2XX11_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX11_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.070e-41
Identity = 64/116 (55.17%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    4 DIETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDKMREQQGSRMKCVVTVFG 351
            D+++SE+LAFIPEQVE +L   +D +L+TEVY + KV  W++ IC+  + EL  L KPFKYVV+C+I+QKNGAG ++G +A+WD+ NDN+    WP    REQQ SRM CVVT FG
Sbjct:    3 DLQSSEELAFIPEQVEPLLYQAIDQVLKTEVYDQSKVPQWIDTICETCVAELTALKKPFKYVVNCLIMQKNGAGLNMGQAAHWDLGNDNMASAKWPP---REQQSSRMVCVVTAFG 115          
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: A0A8J2SFI7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFI7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 5.070e-38
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1
Query:   10 ETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDKMREQQGSRMKCVVTVFGLSL 360
            + SE  AF PE+VE +L  VV  +L  EVY E KV+ WV+ ICD+SMQ+L  ++KPFKYVV+C+++QKNGAG H G S +WD++NDN  ++A+P    ++    RM CVVT FG+S+
Sbjct:    6 QNSEDTAFQPEEVEPLLNDVVAKVLANEVYDESKVATWVDRICDQSMQKLTQMNKPFKYVVTCILMQKNGAGVHTGQSCFWDVANDNCARIAYPLASKKQAYDPRMYCVVTCFGVSM 122          
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: K3WSZ8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSZ8_GLOUD)

HSP 1 Score: 127 bits (318), Expect = 1.890e-35
Identity = 58/118 (49.15%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    4 DIETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDKMREQQGSRMKCVVTVFGLS 357
            D+++SE+LAF+ E+V+ I++  +D  L+ E+Y E KV+HWV+AICD  +++L +L KP KY+VSC+I+QKNGAG H   S +WD   D    V WP+DK ++   S M C+VTV GLS
Sbjct:    4 DLQSSEELAFVAEEVDRIIVVSIDACLKDEMYDERKVAHWVDAICDAILKQLSELRKPLKYIVSCMIMQKNGAGVHASVSCHWDTVTDGAHVVKWPSDKHKDHNRS-MYCIVTVGGLS 120          
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: A0A7S1XIN6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XIN6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.850e-35
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    4 DIETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDKMREQQGSRMKCVVTVFGLSL 360
            D+ +SE+LAF PEQVES+L  V+  ++   VY + KV+ WV+ I DR M+ L +L+KPFKY V+  I+Q+ GAG H  HS +WD++ DN+ Q  WP DK R+Q  +RM  VVTVF  ++
Sbjct:    3 DLGSSEELAFTPEQVESMLYQVITQVIGQSVYDDAKVAQWVDEINDRCMEMLVELTKPFKYTVTTFIMQRKGAGLHSSHSCFWDMATDNIAQANWPNDKHRDQHNNRMYVVVTVFAAAM 121          
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: A0A7S1CA55_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA55_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.120e-34
Identity = 56/118 (47.46%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    4 DIETSEQLAFIPE-QVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDKMREQQGSRMKCVVTVFGL 354
            D+++SEQ AF+ E +V+ I+  V++ +L  E YVE KV HW+N++C+  M+ L +L KPFKY+V+CVI+Q  GAG H  HS + D  ND +C V WP +K ++Q  + M C+VTV+GL
Sbjct:    5 DLDSSEQTAFVVEGEVDPIVRGVIEKVLHNETYVESKVPHWINSVCEDVMEGLTELRKPFKYIVTCVIMQNTGAGMHTEHSGFCDAVNDGMCVVKWPAEKSKDQ--NTMYCIVTVYGL 120          
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: A0A5D6YXL8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YXL8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 4.410e-34
Identity = 58/118 (49.15%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    4 DIETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDKMREQQGSRMKCVVTVFGLS 357
            D+++SE+LAF+ E+V+ I++A +D  L+ EVY E +V+HWV+ IC+  ++ L +L KP KYVVSC+I+QKNGAG H   S +WD   D    V WP+DK ++   S M CV+TV GLS
Sbjct:    4 DLQSSEELAFVAEEVDRIILASIDACLKDEVYDERQVAHWVDTICETVVKGLSELRKPLKYVVSCLIMQKNGAGVHSSVSCHWDTVTDGAHVVKWPSDKHKDHNRS-MYCVITVGGLS 120          
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: A0A2R5G4I6_9STRA (Dynein light chain Tctex-type n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4I6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.950e-33
Identity = 53/117 (45.30%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    4 DIETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDKMREQQGSRMKCVVTVFGL 354
            D++++E+ AFI E+VE I+ + ++  L+ + + E KV+ W+++IC+  MQ+L DL KPFKYV++C I+QKNGAG H  +S+YWD  +D    V WP DK +EQ  + + C+V+V+GL
Sbjct:    3 DLQSAEESAFIAEEVERIVESSIETHLKDQAHDETKVARWIDSICETCMQDLADLGKPFKYVITCAIMQKNGAGLHTANSSYWDTVSDGCVTVKWPGDKSKEQNKT-LYCIVSVYGL 118          
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Match: T0QB04_SAPDV (Uncharacterized protein n=6 Tax=Saprolegniaceae TaxID=4764 RepID=T0QB04_SAPDV)

HSP 1 Score: 118 bits (296), Expect = 4.160e-32
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    4 DIETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSMQELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDKMREQQGSRMKCVVTVFGL 354
            D+++SE+LAF+ E+V+ I++  V+  L+   Y E +VSHWV++ICD  M+ L +L KP KY+VSCVI+QKNGAG H   S +WD + D    V WP+DK +E   + M C+VTV GL
Sbjct:    4 DLQSSEELAFVAEEVDRIILQSVEHFLKDRSYEETEVSHWVDSICDGIMKGLCELRKPLKYIVSCVIMQKNGAGVHSAVSCHWDTAIDGAHVVKWPSDKHKEHNRT-MYCIVTVGGL 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM67_9STRA1.380e-6069.17Tctex-1 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
D8LG53_ECTSI2.470e-6095.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XX11_9STRA4.070e-4155.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2SFI7_9STRA5.070e-3851.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K3WSZ8_GLOUD1.890e-3549.15Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1XIN6_9STRA2.850e-3548.74Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1CA55_9STRA1.120e-3447.46Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5D6YXL8_9STRA4.410e-3449.15Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2R5G4I6_9STRA4.950e-3345.30Dynein light chain Tctex-type n=1 Tax=Hondaea ferm... [more]
T0QB04_SAPDV4.160e-3248.72Uncharacterized protein n=6 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:692844..694545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue2.7e-45
Seed eggNOG ortholog2880.D8LG53
KEGG koko:K05039,ko:K10420
KEGG TC2.A.22.3
EggNOG free text desc.intracellular transport of viral protein in host cell
EggNOG OGsKOG4081@1,KOG4081@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTctex-1
Ec32 orthologEc-11_001910.1
Exons3
Model size363
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14355.1prot_P-fluviatile_contig8.14355.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 692844..694545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817225.0820773-CDS-P-fluviatile_contig8:692843..6929541622817225.0820773-CDS-P-fluviatile_contig8:692843..692954Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 692844..692954 +
1693571573.2166882-CDS-P-fluviatile_contig8:692843..6929541693571573.2166882-CDS-P-fluviatile_contig8:692843..692954Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 692844..692954 +
1622817225.0925808-CDS-P-fluviatile_contig8:693789..6939571622817225.0925808-CDS-P-fluviatile_contig8:693789..693957Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 693790..693957 +
1693571573.228264-CDS-P-fluviatile_contig8:693789..6939571693571573.228264-CDS-P-fluviatile_contig8:693789..693957Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 693790..693957 +
1622817225.1022832-CDS-P-fluviatile_contig8:694461..6945451622817225.1022832-CDS-P-fluviatile_contig8:694461..694545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 694462..694545 +
1693571573.2378833-CDS-P-fluviatile_contig8:694461..6945451693571573.2378833-CDS-P-fluviatile_contig8:694461..694545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 694462..694545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14355.1

>prot_P-fluviatile_contig8.14355.1 ID=prot_P-fluviatile_contig8.14355.1|Name=mRNA_P-fluviatile_contig8.14355.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=121bp
MDIETSEQLAFIPEQVESILMAVVDGILRTEVYVEEKVSHWVNAICDRSM
QELHDLSKPFKYVVSCVIVQKNGAGFHIGHSAYWDISNDNVCQVAWPTDK
MREQQGSRMKCVVTVFGLSL*
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mRNA from alignment at P-fluviatile_contig8:692844..694545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14355.1 ID=mRNA_P-fluviatile_contig8.14355.1|Name=mRNA_P-fluviatile_contig8.14355.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1702bp|location=Sequence derived from alignment at P-fluviatile_contig8:692844..694545+ (Porterinema fluviatile SAG_2381)
ATGGATATCGAAACGTCCGAGCAACTGGCGTTCATCCCGGAGCAGGTGGA GAGTATCCTGATGGCGGTGGTCGACGGTATCTTACGCACGGAAGTGTACG TCGAGGAAAAGGTGAACTATTAATATTAATATATAATGAATTTTGTTGCG CCGAACAGAGAATTTACTCGCGTCTTTTGATGCACAATCGACAACTAATG AAGCAACGCCACTATGAGGACATGATCCACGCGGCGCAACGTCGACGTTC GTGTACAGAGACCCGCAGAACAAAAACTCACAAAGTATCCAAAGATTCAA GGACATCGCTTGGAGAAGCTTCACCTTGTTCATGACTCGAGTTATGTTTC TGGTAGACTTTGGCCGTTTCAAAGCATGCACGCCTCCACCCGTGTGCGCC TTGACATATGTACCTGGTAGTCTGTAAGAGGGTGAGTATCTCTGGACGGG GGAGCTTCTGGAACATGGGCCAGCCCACCATTTTTTCGTGGATTTTCCCT CCGTACTTGTAAAATGCTAGGTCTATACAACGCACCGTAGTTAGAGTCTT TGCGAGGGTGAACACAACTCATGCTACCCCTCGATCGAATGACCACATGC AGGTCAACATTCAAAGCTAATTATTTAGGTATCCATTTGGACACATCCCT GTACTCCCCGATACATGTCGTGTCAAAGGAATTTGATTTTTCGCGCTCTT ATGGCCGAGCTTTGGTGATTATCAAGACCATTGTGGTTCTTGAAACGAAA CCGTATCCAAAGAAGCCAAGCAGCCGCAACCGATACCTCCTCCCCAACAG CATGTTTGTACACGATCAAAATCATGACGAATGTGTTGGGATACCAATCG CTTGAGTTCGTGCACCTTCTGTCCGTAGACTTAAAGTGCGCCATTTCACT ACTCACGTTGTTCCTGTCTACACGATCAATTGGTGGATCGGTACAGGTAT CCCACTGGGTGAATGCAATATGCGACAGGAGCATGCAGGAACTCCACGAC CTCAGCAAGCCCTTCAAGTACGTGGTGTCGTGCGTGATTGTACAGAAGAA CGGGGCGGGGTTTCACATCGGACATAGCGCGTACTGGGACATTAGCAACG ACAATGTTTGTCAGGTGCGAAATACCCTTTTGGAGCTTCAAGAGAGGGAG AGCAGGCGTAAGGTGTGCATTACTTGGAGGAATCTTGAGTCGGTGTCTGC ATCGTGACGTATCCGAGAGCTGGGTACACAGGAGTAGAATTTGGCAGTTT CAGGGCACTTCCTCGACGCTGATCCACAATTGTGTGAGCATATGAATGTC GAAGTATGGTCAGCACCGGTAAAAGCAGCGGTGATGATACTTGCGCACTT GCCACAGCCGCCGAAACGTTTGGGAACGGATTGGTCTCTCACGTATGTTC TCCCGTTGGCTACACAGCCGACTAGAGCCGACAAAACATGGAGCCCACTC TCAGGGTTCTTCACTCTCCTAGACTATCGACCGACGAAGCTTTCCTCCGT TTCCGCTCCTTCTTGTGTACCTTGCTGCCCTTGCAGTGGTAAAGGGCCAG CCTATTCCGCGCTTCTTGTGGTCGACCGCAACCAATATTATTTCCCCCTC TGATGCTTCGTTCGTTAGGTGGCATGGCCAACCGACAAGATGAGGGAGCA GCAGGGGAGCCGAATGAAATGCGTCGTCACCGTGTTTGGTCTCTCATTGT AG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:692844..694545+

>mRNA_P-fluviatile_contig8.14355.1 ID=mRNA_P-fluviatile_contig8.14355.1|Name=mRNA_P-fluviatile_contig8.14355.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=726bp|location=Sequence derived from alignment at P-fluviatile_contig8:692844..694545+ (Porterinema fluviatile SAG_2381)
ATGGATATCGAAACGTCCGAGCAACTGGCGTTCATCCCGGAGCAGGTGGA
GAGTATCCTGATGGCGGTGGTCGACGGTATCTTACGCACGGAAGTGTACG
TCGAGGAAAAGATGGATATCGAAACGTCCGAGCAACTGGCGTTCATCCCG
GAGCAGGTGGAGAGTATCCTGATGGCGGTGGTCGACGGTATCTTACGCAC
GGAAGTGTACGTCGAGGAAAAGGTATCCCACTGGGTGAATGCAATATGCG
ACAGGAGCATGCAGGAACTCCACGACCTCAGCAAGCCCTTCAAGTACGTG
GTGTCGTGCGTGATTGTACAGAAGAACGGGGCGGGGTTTCACATCGGACA
TAGCGCGTACTGGGACATTAGCAACGACAATGTTTGTCAGGTATCCCACT
GGGTGAATGCAATATGCGACAGGAGCATGCAGGAACTCCACGACCTCAGC
AAGCCCTTCAAGTACGTGGTGTCGTGCGTGATTGTACAGAAGAACGGGGC
GGGGTTTCACATCGGACATAGCGCGTACTGGGACATTAGCAACGACAATG
TTTGTCAGGTGGCATGGCCAACCGACAAGATGAGGGAGCAGCAGGGGAGC
CGAATGAAATGCGTCGTCACCGTGTTTGGTCTCTCATTGTAGGTGGCATG
GCCAACCGACAAGATGAGGGAGCAGCAGGGGAGCCGAATGAAATGCGTCG
TCACCGTGTTTGGTCTCTCATTGTAG
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