mRNA_P-fluviatile_contig8.14353.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14353.1
Unique NamemRNA_P-fluviatile_contig8.14353.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14353.1 vs. uniprot
Match: A0A4D9DC59_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC59_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.580e-8
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:  298 RYLHTTSDSKFTQNNCPNCPIVGQAEVTCTSTAAASS-WKADQGIYL 435
            R+L T +  +FTQ NCPNCPIVGQ EV C  T  A + WKA QGI++
Sbjct:  167 RFLQTEAKHRFTQKNCPNCPIVGQQEVFCHQTGGAETVWKAVQGIFI 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4D9DC59_9STRA2.580e-857.45Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:686541..687001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14353.1prot_P-fluviatile_contig8.14353.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 686547..686990 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.7893612-UTR-P-fluviatile_contig8:686540..6865461622817217.7893612-UTR-P-fluviatile_contig8:686540..686546Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 686541..686546 +
1693571543.1425922-UTR-P-fluviatile_contig8:686540..6865461693571543.1425922-UTR-P-fluviatile_contig8:686540..686546Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 686541..686546 +
1622817217.8114657-UTR-P-fluviatile_contig8:686990..6870011622817217.8114657-UTR-P-fluviatile_contig8:686990..687001Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 686991..687001 +
1693571543.163703-UTR-P-fluviatile_contig8:686990..6870011693571543.163703-UTR-P-fluviatile_contig8:686990..687001Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 686991..687001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.8012884-CDS-P-fluviatile_contig8:686546..6869901622817217.8012884-CDS-P-fluviatile_contig8:686546..686990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 686547..686990 +
1693571543.1533644-CDS-P-fluviatile_contig8:686546..6869901693571543.1533644-CDS-P-fluviatile_contig8:686546..686990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 686547..686990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14353.1

>prot_P-fluviatile_contig8.14353.1 ID=prot_P-fluviatile_contig8.14353.1|Name=mRNA_P-fluviatile_contig8.14353.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=148bp
MFLHVMSAERGGCRSRRRFDSMSVRTELQTKGYNDLDIRSRYINTMRRQR
KRSFTLLREATSYLPSPTPRIPSLLRVAASLLPPPSLLPCLPTELDTRYL
HTTSDSKFTQNNCPNCPIVGQAEVTCTSTAAASSWKADQGIYLGATS*
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mRNA from alignment at P-fluviatile_contig8:686541..687001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14353.1 ID=mRNA_P-fluviatile_contig8.14353.1|Name=mRNA_P-fluviatile_contig8.14353.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=461bp|location=Sequence derived from alignment at P-fluviatile_contig8:686541..687001+ (Porterinema fluviatile SAG_2381)
GTGCAGATGTTTCTGCACGTGATGTCTGCTGAGCGGGGCGGGTGTCGTTC
ACGAAGACGATTTGATTCGATGTCTGTCCGTACGGAGCTGCAAACAAAGG
GCTACAATGATCTTGACATCCGCAGCAGGTATATTAATACCATGAGGCGC
CAACGCAAACGTTCGTTTACCTTACTCCGCGAAGCCACTTCTTACCTTCC
CTCCCCGACGCCGCGTATCCCGTCGCTCTTGCGTGTTGCGGCCTCTCTCC
TCCCGCCTCCTTCTCTCCTGCCGTGTCTCCCCACGGAACTCGACACAAGG
TACCTCCACACCACGAGCGACAGCAAGTTCACCCAGAACAACTGCCCGAA
CTGTCCGATCGTGGGGCAGGCGGAGGTGACCTGCACCTCCACGGCGGCGG
CTTCCTCCTGGAAAGCCGACCAGGGCATCTACCTCGGAGCCACGTCGTAA
AGCTTGCAGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:686541..687001+

>mRNA_P-fluviatile_contig8.14353.1 ID=mRNA_P-fluviatile_contig8.14353.1|Name=mRNA_P-fluviatile_contig8.14353.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=888bp|location=Sequence derived from alignment at P-fluviatile_contig8:686541..687001+ (Porterinema fluviatile SAG_2381)
ATGTTTCTGCACGTGATGTCTGCTGAGCGGGGCGGGTGTCGTTCACGAAG
ACGATTTGATTCGATGTCTGTCCGTACGGAGCTGCAAACAAAGGGCTACA
ATGATCTTGACATCCGCAGCAGGTATATTAATACCATGAGGCGCCAACGC
AAACGTTCGTTTACCTTACTCCGCGAAGCCACTTCTTACCTTCCCTCCCC
GACGCCGCGTATCCCGTCGCTCTTGCGTGTTGCGGCCTCTCTCCTCCCGC
CTCCTTCTCTCCTGCCGTGTCTCCCCACGGAACTCGACACAAGGTACCTC
CACACCACGAGCGACAGCAAGTTCACCCAGAACAACTGCCCGAACTGTCC
GATCGTGGGGCAGGCGGAGGTGACCTGCACCTCCACGGCGGCGGCTTCCT
CCTGGAAAGCCGACCAGGGCATCTACCTCGGAGCCACGTCGTAAATGTTT
CTGCACGTGATGTCTGCTGAGCGGGGCGGGTGTCGTTCACGAAGACGATT
TGATTCGATGTCTGTCCGTACGGAGCTGCAAACAAAGGGCTACAATGATC
TTGACATCCGCAGCAGGTATATTAATACCATGAGGCGCCAACGCAAACGT
TCGTTTACCTTACTCCGCGAAGCCACTTCTTACCTTCCCTCCCCGACGCC
GCGTATCCCGTCGCTCTTGCGTGTTGCGGCCTCTCTCCTCCCGCCTCCTT
CTCTCCTGCCGTGTCTCCCCACGGAACTCGACACAAGGTACCTCCACACC
ACGAGCGACAGCAAGTTCACCCAGAACAACTGCCCGAACTGTCCGATCGT
GGGGCAGGCGGAGGTGACCTGCACCTCCACGGCGGCGGCTTCCTCCTGGA
AAGCCGACCAGGGCATCTACCTCGGAGCCACGTCGTAA
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