mRNA_P-fluviatile_contig8.14350.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14350.1
Unique NamemRNA_P-fluviatile_contig8.14350.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14350.1 vs. uniprot
Match: D8LG56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG56_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 1.160e-104
Identity = 145/162 (89.51%), Postives = 152/162 (93.83%), Query Frame = 1 
Query:    1 EHKAFFAVLAVLFQPQACQEASPETLEARRDILKRLKKELHIPDSVSDAVLGALKSDTPQQWQRSLAALQGKVKAKLPEHAPLMLGNMELCTGADVDVKDYNNNWLPGKIHGLRGSSLCIHYNGWANKWDEWVDVSHGRVAPRETYTSKAAWSRRKHNGKQR 486
            EHKA+FAVLAVLFQP ACQEASPE L+ARRDILKRLKKELHIPDSVSDAV GALKSD P QWQRSL ALQGKVKAKLPEHAPLMLGN+ELC GADVDVKD+  NWLPGKI+GL+GSSLCIHY+GWANKWDEWVDVSHGRVAPRETYTSKAAW RRKHNGKQR
Sbjct:   50 EHKAYFAVLAVLFQPTACQEASPEMLDARRDILKRLKKELHIPDSVSDAVHGALKSDKPLQWQRSLVALQGKVKAKLPEHAPLMLGNLELCVGADVDVKDFQKNWLPGKINGLQGSSLCIHYHGWANKWDEWVDVSHGRVAPRETYTSKAAWGRRKHNGKQR 211
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BLAST of mRNA_P-fluviatile_contig8.14350.1 vs. uniprot
Match: UPI000712106E (ubiquitin family protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000712106E)

HSP 1 Score: 63.5 bits (153), Expect = 8.750e-9
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:  253 LGNMELCTGADVDVKDYNNNWLPGKIHGLRGSSLCIHYNGWANKWDEWVDVSHGRVAPRETYT 441
            LG+     G  VD  D  + WL   +  + G+ + IHYNGW +KWDEW+ ++  R+AP  T+T
Sbjct:  113 LGSRRFFVGQWVDALDTVSKWLEATVIAVNGTYVYIHYNGWPDKWDEWIHINSPRLAPFRTHT 175
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BLAST of mRNA_P-fluviatile_contig8.14350.1 vs. uniprot
Match: A0BB96_PARTE (Ubiquitin-like domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BB96_PARTE)

HSP 1 Score: 63.5 bits (153), Expect = 9.360e-9
Identity = 23/55 (41.82%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:  277 GADVDVKDYNNNWLPGKIHGLRGSSLCIHYNGWANKWDEWVDVSHGRVAPRETYT 441
            G  +DVKD  + WL  ++  +  + + +HYNGW N+WDEW+D    R+A   TYT
Sbjct:  192 GQWIDVKDTIDQWLEAQVQIVEQNRVFVHYNGWGNRWDEWIDTQSPRIATFRTYT 246
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BLAST of mRNA_P-fluviatile_contig8.14350.1 vs. uniprot
Match: G0R2T7_ICHMG (Tudor-knot domain-containing protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R2T7_ICHMG)

HSP 1 Score: 61.6 bits (148), Expect = 4.280e-8
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:  277 GADVDVKDYNNNWLPGKIHGLRGSS--LCIHYNGWANKWDEWVDVSHGRVAPRETYT 441
            G  +DVKD  N WL  +I  + G    L +HYNGWA +WDEW+D    R+A   T+T
Sbjct:  152 GQWIDVKDTVNQWLEAQIIKISGQEQKLFVHYNGWATRWDEWIDAKSDRIALFRTHT 208
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BLAST of mRNA_P-fluviatile_contig8.14350.1 vs. uniprot
Match: A0A7S0D8P9_9EUKA (Ubiquitinyl hydrolase 1 n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D8P9_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 8.010e-7
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:  286 VDVKDYNNNWLPGKIHGLRGSSLCIHYNGWANKWDEWVDVSHGRVAPRET 435
            VD KD  N WLP  +  ++G  + +HY G+  KWDEWV+    R+AP  T
Sbjct:  435 VDCKDTQNKWLPAVVQRVQGEQVYVHYIGYGEKWDEWVNKRSDRLAPSGT 484
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BLAST of mRNA_P-fluviatile_contig8.14350.1 vs. uniprot
Match: A0A8K1CDP4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDP4_PYTOL)

HSP 1 Score: 55.8 bits (133), Expect = 5.030e-6
Identity = 22/63 (34.92%), Postives = 35/63 (55.56%), Query Frame = 1 
Query:  250 MLGNM---ELCTGADVDVKDYNNNWLPGKIHGLRGSSLCIHYNGWANKWDEWVDVSHGRVAPR 429
            +L NM   EL  G  +D  D +  W   ++  +    + +HY GW +KW+EW+D+   R+APR
Sbjct:  289 ILANMWRTELKKGQLIDALDTDKKWYESRVLDISEGKVFVHYRGWTDKWNEWIDLFSNRLAPR 351
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BLAST of mRNA_P-fluviatile_contig8.14350.1 vs. uniprot
Match: A0A0L0HDP8_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HDP8_SPIPD)

HSP 1 Score: 55.1 bits (131), Expect = 9.550e-6
Identity = 17/47 (36.17%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  280 ADVDVKDYNNNWLPGKIHGLRGSSLCIHYNGWANKWDEWVDVSHGRV 420
            A V+V+D    W PG++  ++   +C+HY+GW +++DEW+D    R+
Sbjct:  219 AIVEVRDGAKTWWPGRVVTVQSGKVCVHYDGWGDQYDEWIDCESQRI 265
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LG56_ECTSI1.160e-10489.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000712106E8.750e-939.68ubiquitin family protein n=1 Tax=Blastocystis sp. ... [more]
A0BB96_PARTE9.360e-941.82Ubiquitin-like domain-containing protein n=2 Tax=P... [more]
G0R2T7_ICHMG4.280e-845.61Tudor-knot domain-containing protein n=1 Tax=Ichth... [more]
A0A7S0D8P9_9EUKA8.010e-744.00Ubiquitinyl hydrolase 1 n=1 Tax=Amorphochlora amoe... [more]
A0A8K1CDP4_PYTOL5.030e-634.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0L0HDP8_SPIPD9.550e-636.17Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:675909..678383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score308.1
Seed ortholog evalue2.4e-81
Seed eggNOG ortholog2880.D8LG56
EggNOG OGs2E4UF@1,2SBPI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001870.1
Exons4
Model size492
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14350.1prot_P-fluviatile_contig8.14350.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 675909..678383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817224.8353145-CDS-P-fluviatile_contig8:675908..6760491622817224.8353145-CDS-P-fluviatile_contig8:675908..676049Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 675909..676049 -
1693571573.0663443-CDS-P-fluviatile_contig8:675908..6760491693571573.0663443-CDS-P-fluviatile_contig8:675908..676049Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 675909..676049 -
1622817224.8492014-CDS-P-fluviatile_contig8:676654..6767491622817224.8492014-CDS-P-fluviatile_contig8:676654..676749Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 676655..676749 -
1693571573.076898-CDS-P-fluviatile_contig8:676654..6767491693571573.076898-CDS-P-fluviatile_contig8:676654..676749Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 676655..676749 -
1622817224.8658264-CDS-P-fluviatile_contig8:677398..6774991622817224.8658264-CDS-P-fluviatile_contig8:677398..677499Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 677399..677499 -
1693571573.0861342-CDS-P-fluviatile_contig8:677398..6774991693571573.0861342-CDS-P-fluviatile_contig8:677398..677499Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 677399..677499 -
1622817224.8789613-CDS-P-fluviatile_contig8:678228..6783831622817224.8789613-CDS-P-fluviatile_contig8:678228..678383Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 678229..678383 -
1693571573.0965018-CDS-P-fluviatile_contig8:678228..6783831693571573.0965018-CDS-P-fluviatile_contig8:678228..678383Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 678229..678383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14350.1

>prot_P-fluviatile_contig8.14350.1 ID=prot_P-fluviatile_contig8.14350.1|Name=mRNA_P-fluviatile_contig8.14350.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=164bp
EHKAFFAVLAVLFQPQACQEASPETLEARRDILKRLKKELHIPDSVSDAV
LGALKSDTPQQWQRSLAALQGKVKAKLPEHAPLMLGNMELCTGADVDVKD
YNNNWLPGKIHGLRGSSLCIHYNGWANKWDEWVDVSHGRVAPRETYTSKA
AWSRRKHNGKQRS*
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mRNA from alignment at P-fluviatile_contig8:675909..678383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14350.1 ID=mRNA_P-fluviatile_contig8.14350.1|Name=mRNA_P-fluviatile_contig8.14350.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2475bp|location=Sequence derived from alignment at P-fluviatile_contig8:675909..678383- (Porterinema fluviatile SAG_2381)
GAGCACAAAGCCTTCTTCGCGGTCCTCGCGGTGCTGTTCCAGCCCCAGGC
CTGCCAGGAAGCTTCTCCGGAGACCTTGGAGGCACGAAGGGACATTCTGA
AGCGCCTCAAGAAAGAGCTGCACATACCAGACTCTGTGTCGGACGCTGTG
CTCGGGTACGCGACCAATGTTAAAGTTGAATACGTGAAATATTAAACGCG
AAGAAATTCAGTGTTTATTTTTGGCAGTGTTCACGGAAGGCCACAACCAG
CCGCTTGCTGCTGCTGATGCGTATTTTTCGCAGTTTTTTACGTGGCGAGT
CTGTGTCGAGAGCGCATCCTTGTTTTATGTCCACTGGCGTTTGTGACCGG
AGTGGCCGGCCCGCGAGAGGTAACGGCCGTTTGTCGGGTATTCCCTAACC
TCCATACAATCCCGAGATACAGCAAGCCATTCGGCTTTGGTTTCTGGTCG
AACCCCGTTGCTGCTGTCAACGGACGTTCTTGCCCGAATGCCTGCCGGGT
ATTTTGTTTGTTTTTTTCACGCCGAGATTGCCCAACCCAATTGTCGCGCT
TGTCGTCTGTCGCATCTTTGTTTTCCACATCTTTTTTTTACCTCTCTCTT
TTCTGTTGCTGCTTGTGTAGGAGCGTAGGCAATAGCCCTTGATGGCCTCA
CTTAAACTCTGTGCGATGTGTGGTGTCTTTCCAAATATTTAGTTGGCGGC
TGAGCGGTGGTGCGCACTCACAAATGCATCGGTTTACGCGAGAAGGAGCC
ATTTTGGTCCTCATCGTGTGGTGGGACTATCATGTCCTACGCCGCGTTGC
AATCGGTTGAATGTGGCTGGCAATTTGTTCGTGTTCTTCGTGTATGTTTT
TTCTTCATTTCCTAACCTCTCTGTTTGTCGGCAGGGCGCTCAAGTCGGAC
ACCCCGCAGCAGTGGCAGAGATCTTTGGCCGCTCTCCAAGGCAAGGTCAA
GGCAAAGTTGCCCGAACACGCGCCGCTGATGCTAGGTGAGAGGTCGAAAG
AAGAAGCGGGAGAGAGAAGAGTGAGAGGGGGAGGAAGATCGGGAAAGGAG
TGCAAGCAAGCTGGTCCTGGGTTTGTACGCCCATCCCAGTAGCAGCCTAC
TTTGTTTCACTACTCGAGCGGGCCGCTTTACGCGAACCACATTGCTTGCG
TTTTATGGTGCGGCAAGGTGCCGAATACATCCCGTTGTTGGTGTGACCCG
GGCCTGCTTGCGAAGGATCGCGATGGTAATTCGTCGAACTCACTCGAAAA
CGTTGTCAAGGCATATCTGGTATCAAAAGTTCCCAATGGGCGTGAGGCGC
TCAACAAGCCGCATTTTGAAGTCGTTCGGAATCCCCCGTACACCATTTTT
GCTTTTTTCACAGGCACTTCTCCCACTCCCCCAACCCGGAGGCGTTGAAA
GCATTGCCGCGTTGATTGCTGCAACAACGACGTCCTGGTGCTGTTTAGCG
AAGTAAAAGCACGCTGCAGGCATCGTAGCCCCGTGTGCGCTGCTGCCTAT
CTGGCTGCCGACTTGTCTGCGTTGGTTTTACTTTTTCGGGAGGATGCGGC
CTCCTCCCTTGTCATAAGGTCGGCTGAACATAAAAATGGGCGTATCATTT
ATTATTCTGGGACCGTCGTCGTTTTGGTGGGCAGGCAACATGGAGCTCTG
CACGGGCGCGGATGTGGATGTGAAGGACTACAACAACAATTGGCTGCCAG
GAAAGATCCACGGCCTCCGAGGCTCGTCGGTGAGCAAACGCGTCCGCCTC
TCCGCTTGCCTGCCCGCCTTCCTGCATGATTGCCCACCAATGTGCGCTGC
TGTGCTCATCTCTCCACCTCCCACACTCCCCTCTCTTTTGGCGTTTTGGC
GTCATATCCCTGTGTTTTTGGCATCGCCTGTTTTTTTCTGCGACTTTCGG
GTGCCATCCCTCGCGCTCTTGCCGCTTACGTCTTGTCCCGTTCTCTGCCT
GCCGCTTCGCCTCTTCCCCCTTTGCCTCGAAGGTGCTTGCACGCCCAACG
CCCTCTTAAGATGTGGATGTCCACCGTGGTTTTCTGGGCGGGGGGTCGTC
GCCTGCATGTCTGTCTTCCTCGGACAACATCGAGGTCGCGCCACATGCGA
GTCGATGCTTTTGTAGAAACAGCAACGGCTTTTTCGCGCGCGTTCTCTCG
CTCAGCAACACCATTCCCTTTCCATGAGTGTGCGTGGGCGTACTTTCATG
TGCCGCGCTCGCTGCCCATCCACAGGTTGAAAGGAAAGCAAACGCGCCGA
GCTTTCACCCCGACTAGCCGCTCCCCTCCTCGCTCCTGAGATTCCCCGTG
TGTTGTCAATCCCCCCCCGGTTCACTCGCTACAGCTCTGCATCCACTACA
ACGGCTGGGCCAACAAGTGGGACGAGTGGGTAGACGTTTCCCACGGCCGC
GTAGCCCCGCGGGAGACGTATACTTCCAAGGCAGCCTGGAGTAGGCGCAA
GCACAACGGGAAGCAGCGGTCTTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:675909..678383-

>mRNA_P-fluviatile_contig8.14350.1 ID=mRNA_P-fluviatile_contig8.14350.1|Name=mRNA_P-fluviatile_contig8.14350.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=984bp|location=Sequence derived from alignment at P-fluviatile_contig8:675909..678383- (Porterinema fluviatile SAG_2381)
GAGCACAAAGCCTTCTTCGCGGTCCTCGCGGTGCTGTTCCAGCCCCAGGC
CTGCCAGGAAGCTTCTCCGGAGACCTTGGAGGCACGAAGGGACATTCTGA
AGCGCCTCAAGAAAGAGCTGCACATACCAGACTCTGTGTCGGACGCTGTG
CTCGGGAGCACAAAGCCTTCTTCGCGGTCCTCGCGGTGCTGTTCCAGCCC
CAGGCCTGCCAGGAAGCTTCTCCGGAGACCTTGGAGGCACGAAGGGACAT
TCTGAAGCGCCTCAAGAAAGAGCTGCACATACCAGACTCTGTGTCGGACG
CTGTGCTCGGGGCGCTCAAGTCGGACACCCCGCAGCAGTGGCAGAGATCT
TTGGCCGCTCTCCAAGGCAAGGTCAAGGCAAAGTTGCCCGAACACGCGCC
GCTGATGCTAGGGCGCTCAAGTCGGACACCCCGCAGCAGTGGCAGAGATC
TTTGGCCGCTCTCCAAGGCAAGGTCAAGGCAAAGTTGCCCGAACACGCGC
CGCTGATGCTAGGCAACATGGAGCTCTGCACGGGCGCGGATGTGGATGTG
AAGGACTACAACAACAATTGGCTGCCAGGAAAGATCCACGGCCTCCGAGG
CTCGTCGGCAACATGGAGCTCTGCACGGGCGCGGATGTGGATGTGAAGGA
CTACAACAACAATTGGCTGCCAGGAAAGATCCACGGCCTCCGAGGCTCGT
CGCTCTGCATCCACTACAACGGCTGGGCCAACAAGTGGGACGAGTGGGTA
GACGTTTCCCACGGCCGCGTAGCCCCGCGGGAGACGTATACTTCCAAGGC
AGCCTGGAGTAGGCGCAAGCACAACGGGAAGCAGCGGTCTTAGCTCTGCA
TCCACTACAACGGCTGGGCCAACAAGTGGGACGAGTGGGTAGACGTTTCC
CACGGCCGCGTAGCCCCGCGGGAGACGTATACTTCCAAGGCAGCCTGGAG
TAGGCGCAAGCACAACGGGAAGCAGCGGTCTTAG
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