mRNA_P-fluviatile_contig8.14342.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14342.1
Unique NamemRNA_P-fluviatile_contig8.14342.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 7.780e-50
Identity = 82/90 (91.11%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:  109 GGALVAYEIPEDWRMLPRFYPAPGWLRVTLASGFRVRGISINPGTPGFPYLFHPHRSMEGKQPPYIAIAGDCSQSAYILRPMAAKQGRDG 378
            GG+LVAYEIPEDWRMLPRFYPAPGWLR TLASGFRVRGISINPGTPGFPYLFHPHRSMEGKQPPYIAIAGDCSQSAYILRP  A  G  G
Sbjct: 1004 GGSLVAYEIPEDWRMLPRFYPAPGWLRATLASGFRVRGISINPGTPGFPYLFHPHRSMEGKQPPYIAIAGDCSQSAYILRPAPAASGSAG 1093
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: D7FTN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN5_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.220e-32
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:  109 GGALVAYEIPEDWRMLPRFYPAPGWLRVTLASGFRVRGISINPGTPGFPYLFHPHRSME 285
            GG+LVAYEIPEDWRMLPRFYPAPGWLR TLASGFRVRGISINPGTPGFPYLFHPHRSME
Sbjct:  662 GGSLVAYEIPEDWRMLPRFYPAPGWLRATLASGFRVRGISINPGTPGFPYLFHPHRSME 720
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: A0A836CJ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ47_9STRA)

HSP 1 Score: 126 bits (317), Expect = 6.010e-32
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:  109 GGALVAYEIPEDWRMLPRFYPAPGWLRVTLASGFRVRGISINPGTPGFPYLFHP-HRSMEGKQP---PYIAIAGDCSQSAYILRP 351
            GGAL AYEIP+ WR+ PR YP+PGW R T+ASGFRV+G+ INPG PGF Y+FHP HR+ E   P   PYIA+AGDCSQ+AY+LRP
Sbjct:  240 GGALFAYEIPQLWRVYPRVYPSPGWKRTTIASGFRVKGLGINPGAPGFSYIFHPNHRAGEPAPPGARPYIALAGDCSQAAYVLRP 324
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: A0A4D9DCX2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCX2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.670e-23
Identity = 54/95 (56.84%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:  109 GGALVAYEIPEDWRMLPRFYPAPGWLRVTLASGFRVRGIS-INPGTPGFPYLFHPHRSMEGK--QPPYIAIAGDCSQSAYILRPMAAKQGRDGGG 384
            GG+L AYEIP DWR          W R TLA+GF V+    INPG PGFPY+F+PHRS+ G+  Q PYI +AGDCS +AYI RP+    GRDGGG
Sbjct:  794 GGSLFAYEIPPDWRQ------RACWKRSTLATGFHVKNWGQINPGAPGFPYVFYPHRSLRGQPGQRPYILLAGDCSHAAYIYRPVL---GRDGGG 879
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: A0A7S4DAE7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAE7_HETAK)

HSP 1 Score: 93.6 bits (231), Expect = 1.120e-19
Identity = 55/102 (53.92%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:  109 GGALVAYEIPE-DWRM--LPRFYPAPGWLRVTLASGFRV-----RGISINPGTPGFPYLFHPHR--SMEGKQPPYIAIAGDCSQSAYILRPMAAKQGRDGGG 384
            GG L AYEIP  +W++   P      GW R  LASGFRV     RG   NPG PGF Y FHP R  + EGK PPYIA+AGDC+Q+AYIL P A     D GG
Sbjct:  385 GGVLYAYEIPTANWQVGGAPAAEGWRGWERRALASGFRVHQDQPRG--FNPGAPGFVYAFHPTRRAAREGKDPPYIAVAGDCAQAAYILAPAARHDKSDSGG 484
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: A0A7S4CRI4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CRI4_9EUGL)

HSP 1 Score: 84.7 bits (208), Expect = 9.880e-17
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  175 PGWLRVTLASGFRVRGISINPGTPGFPYLFHPHRSM-EGKQPPYIAIAGDCSQSAYILRPMAAKQG 369
            P W R TLASGF+V+ +SINPG PGF Y FHPH  M E   PP+I +AGDCS +AY+ RP  + +G
Sbjct:  288 PQWKRTTLASGFKVKRLSINPGAPGFVYPFHPHVKMKEQGAPPHILLAGDCSDAAYVYRPTFSDEG 353
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: A0A7S1TPM8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.230e-15
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  166 YPAPGWLRVTLASGFRVRGISINPGTPGFPYLFHPHRSME--------GKQPPYIAIAGDCSQSAYILRPMAAKQGRDGGG 384
            YP  G LR  +ASGFRVRG+SINPG PGF Y F+P R  +        G   PY+ +AGDC+Q+AY+L+P      R+GGG
Sbjct:  468 YPIGGGLRHIVASGFRVRGLSINPGAPGFVYAFYPRRRHDPEVSGAQGGDAKPYLLLAGDCAQAAYVLKP------REGGG 542
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: A0A7R9U642_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U642_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.540e-13
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:  187 RVTLASGFRVRGISINPGTPGFPYLFHPHRSME----GKQP----PYIAIAGDCSQSAYILRPMAAKQGRDGGG 384
            R  LASGFRVRGISINPG PGF Y F+P R  +    G+ P    P++ +AGDC+Q+AY+L P      R+GGG
Sbjct:   54 RKVLASGFRVRGISINPGAPGFVYSFYPRRRDDPNHGGENPAEIRPHLLLAGDCAQAAYVLMP------REGGG 121
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: A0A7S3V9N2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9N2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.620e-13
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:  109 GGALVAYEIP---EDWRMLPRFYPAPGWLRVTLASGFRVRGI---SINPGTPGFPYLFHPHR-----SMEGKQPPYIAIAGDCSQSAYILRPMAAKQGRD 375
            GG+L +Y +P   + W+          WLR  +A+GFRV+G     INPG PGF Y F+P R     S +    P I IAGDC+++AYILRP  +  G D
Sbjct:  684 GGSLFSYRVPAGKDGWK-------TDEWLRTVIATGFRVKGQLGNMINPGAPGFCYTFYPTRQGPKASNKMLSRPLIGIAGDCAETAYILRPSDSTSGED 776
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BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Match: K0RTF0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTF0_THAOC)

HSP 1 Score: 71.6 bits (174), Expect = 5.230e-12
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:  109 GGALVAYEIPE---DWRMLPRFYPAPGWLRVTLASGFRVRGI---SINPGTPGFPYLFHPHRSMEGKQPPYIAIAGDCSQSAYILRPM 354
            GG+L AY IP+   +W+  P       W R  +A+GF+V+G     I+PG PGF Y F P       + P I +AGDC+QSAYIL+P+
Sbjct:  373 GGSLFAYRIPKGRGNWKSQP-------WRRSVVATGFKVQGQLGNMISPGAPGFAYTFFPTLDTTRWRRPLIGLAGDCAQSAYILKPV 453
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE7.780e-5091.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN5_ECTSI2.220e-3296.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CJ47_9STRA6.010e-3267.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DCX2_9STRA3.670e-2356.84Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4DAE7_HETAK1.120e-1953.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4CRI4_9EUGL9.880e-1757.58Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1TPM8_9STRA1.230e-1550.62Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U642_9STRA1.540e-1352.70Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3V9N2_9STRA4.620e-1342.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
K0RTF0_THAOC5.230e-1243.18Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:598572..600208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue5.4e-12
Seed eggNOG ortholog2850.Phatr42982
EggNOG OGs2AV1E@1,2RZVB@2759,2XAYT@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size391
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14342.1prot_P-fluviatile_contig8.14342.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 598574..600208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817223.8241-CDS-P-fluviatile_contig8:598573..5986751622817223.8241-CDS-P-fluviatile_contig8:598573..598675Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 598574..598675 -
1693571570.6299543-CDS-P-fluviatile_contig8:598573..5986751693571570.6299543-CDS-P-fluviatile_contig8:598573..598675Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 598574..598675 -
1622817223.8382347-CDS-P-fluviatile_contig8:598963..5991021622817223.8382347-CDS-P-fluviatile_contig8:598963..599102Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 598964..599102 -
1693571570.643909-CDS-P-fluviatile_contig8:598963..5991021693571570.643909-CDS-P-fluviatile_contig8:598963..599102Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 598964..599102 -
1622817223.8501337-CDS-P-fluviatile_contig8:600062..6002081622817223.8501337-CDS-P-fluviatile_contig8:600062..600208Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 600063..600208 -
1693571570.6610274-CDS-P-fluviatile_contig8:600062..6002081693571570.6610274-CDS-P-fluviatile_contig8:600062..600208Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 600063..600208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14342.1

>prot_P-fluviatile_contig8.14342.1 ID=prot_P-fluviatile_contig8.14342.1|Name=mRNA_P-fluviatile_contig8.14342.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=129bp
PPPSSSRRGGRWGGVVAGGPKQRRWQRREEGGSSGAGGALVAYEIPEDWR
MLPRFYPAPGWLRVTLASGFRVRGISINPGTPGFPYLFHPHRSMEGKQPP
YIAIAGDCSQSAYILRPMAAKQGRDGGGE
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mRNA from alignment at P-fluviatile_contig8:598572..600208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14342.1 ID=mRNA_P-fluviatile_contig8.14342.1|Name=mRNA_P-fluviatile_contig8.14342.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1637bp|location=Sequence derived from alignment at P-fluviatile_contig8:598572..600208- (Porterinema fluviatile SAG_2381)
CCGCCCCCGTCGTCTTCGCGGCGTGGAGGCAGGTGGGGGGGAGTGGTTGC
CGGGGGTCCTAAGCAGCGGCGGTGGCAGCGGCGGGAGGAGGGCGGGAGCA
GCGGCGCGGGAGGCGCGCTCGTGGCGTACGAGATCCCCGAGGACTGGTGA
GCGTGCGAGACCGGGAGAGCTGGTTTTGAAGAGGAAGTGCATGAAGGTTT
AGGCAGGGGGGGACGACATATGTAGGCAGGTTGGACGGGGGGCAGGAAGG
GAGGGACGTAGGGATAGGGGGGAAGGGAGGAGTCGTAGGAAAAGGATGGA
GAGGGATGGGCGGAGGCAATTGGTCATTCCTACGTCATGAGTTTCGTTTC
TTGTTCCTTGCGCTGCCGTTGGTTGCCTTACAGTTTTGTTGAGCCCACGT
GCTCACGAGTTGTTGTGCTCACGTGCTGCGCGCCTCTTGCCGCGTCTCAA
GAGTCGGGGGGTACCTGATTGGGCACCCCCCCTCCCGGTTTCCCCGTCGC
CGAATCTGCCTCCAACGGCTACGGCGAGGTCGATGGTGCTTCTTATTGTC
GTACTTGACATGAAGCACGGCCCAACGCAACCGCCCGCGCCGCCGCTGTG
GACGGTCGGGTGAACAGCAAAACGCGAGCGACTTTTGTCCTTTCTACCGA
GCGAACCCTTGACAGTGGATTTTGTTGGAACGAAGCAGCAGGCCGGAACG
ATGCACAGAGGGAGCGTGCGTCATGTTCTCGCTGTTCCACCCCTCGCTCT
TTCTCTCCCGCTTTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCT
GTCTATCTCTCTCTCTCTCCCTCGAGTGATCTCACTCTTCTGTACCTTCC
TCTCCCTTCCTCTCTGTCGGAGCCTGTCTCGTTATGCTTCCCGCTCGCGC
CGCTACCCGGTGTTGCGATCTCCAAGTTTTTATTTTATCCCGCCACACCA
GTCCTCCCCGATCCCCGCCCTGCACCCATTCTCCCTCGACTCTCATCACC
CACAAGGCGTATGCTCCCGAGGTTTTACCCCGCCCCGGGCTGGCTTCGCG
TCACCCTGGCGAGCGGCTTCCGCGTGCGAGGGATAAGCATCAACCCGGGA
ACCCCCGGGTTCCCGTACCTGTTCCACCCTCACCGGAGCATGGAGGTGCG
TTGCTGTCCATGTTCGAATGGGTGGCTGTGACGAACTAGGTCCCCTCACA
TTTTTGCGTGCGGTTGCTTCTGGTTGCATCGTTGTGATTGTGGTTGTTGT
CGTCGGCTATGTTGTTGTAGTTGTTGATCTTCGTTTCAAAACCACGTTGT
GTCCCTCCCCTTAGTCTTGAACAAGGCGAGGTCAAGGGTGTTGAGGCGTC
AGACTTTTCAAGCGCCCTCAACGACCTCCCCCCCCCCGCCGTGAACACCC
CACGTCTCACATGGCCCCTCTTCTGTCGAGCAGGGGAAACAACCCCCATA
CATTGCCATCGCGGGCGACTGCTCGCAGTCGGCGTACATCCTTCGCCCTA
TGGCGGCGAAACAGGGGCGGGACGGCGGTGGGGAGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:598572..600208-

>mRNA_P-fluviatile_contig8.14342.1 ID=mRNA_P-fluviatile_contig8.14342.1|Name=mRNA_P-fluviatile_contig8.14342.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=774bp|location=Sequence derived from alignment at P-fluviatile_contig8:598572..600208- (Porterinema fluviatile SAG_2381)
CCGCCCCCGTCGTCTTCGCGGCGTGGAGGCAGGTGGGGGGGAGTGGTTGC
CGGGGGTCCTAAGCAGCGGCGGTGGCAGCGGCGGGAGGAGGGCGGGAGCA
GCGGCGCGGGAGGCGCGCTCGTGGCGTACGAGATCCCCGAGGACTGCCGC
CCCCGTCGTCTTCGCGGCGTGGAGGCAGGTGGGGGGGAGTGGTTGCCGGG
GGTCCTAAGCAGCGGCGGTGGCAGCGGCGGGAGGAGGGCGGGAGCAGCGG
CGCGGGAGGCGCGCTCGTGGCGTACGAGATCCCCGAGGACTGGCGTATGC
TCCCGAGGTTTTACCCCGCCCCGGGCTGGCTTCGCGTCACCCTGGCGAGC
GGCTTCCGCGTGCGAGGGATAAGCATCAACCCGGGAACCCCCGGGTTCCC
GTACCTGTTCCACCCTCACCGGAGCATGGAGGCGTATGCTCCCGAGGTTT
TACCCCGCCCCGGGCTGGCTTCGCGTCACCCTGGCGAGCGGCTTCCGCGT
GCGAGGGATAAGCATCAACCCGGGAACCCCCGGGTTCCCGTACCTGTTCC
ACCCTCACCGGAGCATGGAGGGGAAACAACCCCCATACATTGCCATCGCG
GGCGACTGCTCGCAGTCGGCGTACATCCTTCGCCCTATGGCGGCGAAACA
GGGGCGGGACGGCGGTGGGGAGGGGAAACAACCCCCATACATTGCCATCG
CGGGCGACTGCTCGCAGTCGGCGTACATCCTTCGCCCTATGGCGGCGAAA
CAGGGGCGGGACGGCGGTGGGGAG
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