mRNA_P-fluviatile_contig8.14340.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14340.1
Unique NamemRNA_P-fluviatile_contig8.14340.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14340.1 vs. uniprot
Match: D7FIE3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE3_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.200e-66
Identity = 119/170 (70.00%), Postives = 133/170 (78.24%), Query Frame = 3 
Query: 1449 RVTASRAAGGGNVRRGLRMM-EVHFHPPEFGVLVHGTVQAVMLGAFAAIIPKINAERIREKQEGMARDEAYAAGLLYDDEFEDEFGYAEGYVCATCDNTNEVECPKCSGKGFFFLEASAMPKKCVYCSGLGTYGCEECAERREWLWREREARRPPRELPPARGDDFPFVR 1955
            R    R  GGG+   G RM+  +HF PPEF V +HGTVQAVMLG FAA+IPK+ AERIREK+EGM RDE YAAGL  DDE  DE+G A GYVC TCDNTN+VEC +C GKGFF + ASAMPKKC YC+GLGT+ CE+C ERRE L RER ARRPPRELPPARGDDFPF R
Sbjct:   87 RRRTQRRTGGGH---GTRMLFGLHFQPPEFSVWLHGTVQAVMLGGFAALIPKVTAERIREKEEGMVRDEDYAAGLWDDDEDFDEYGNAGGYVCPTCDNTNQVECSECGGKGFF-VSASAMPKKCTYCNGLGTFDCEDCEERREMLRRERGARRPPRELPPARGDDFPFGR 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE3_ECTSI1.200e-6670.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:581860..586588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHeat shock protein DnaJ, cysteine-rich domain
Ec32 orthologEc-11_001580.1
Exons4
Model size3167
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14340.1prot_P-fluviatile_contig8.14340.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 583069..585022 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817223.6431406-UTR-P-fluviatile_contig8:581859..5830681622817223.6431406-UTR-P-fluviatile_contig8:581859..583068Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 581860..583068 -
1693571570.4108174-UTR-P-fluviatile_contig8:581859..5830681693571570.4108174-UTR-P-fluviatile_contig8:581859..583068Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 581860..583068 -
1622817223.6903212-UTR-P-fluviatile_contig8:585022..5854411622817223.6903212-UTR-P-fluviatile_contig8:585022..585441Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 585023..585441 -
1693571570.5398853-UTR-P-fluviatile_contig8:585022..5854411693571570.5398853-UTR-P-fluviatile_contig8:585022..585441Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 585023..585441 -
1622817223.7004135-UTR-P-fluviatile_contig8:585505..5865881622817223.7004135-UTR-P-fluviatile_contig8:585505..586588Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 585506..586588 -
1693571570.5504315-UTR-P-fluviatile_contig8:585505..5865881693571570.5504315-UTR-P-fluviatile_contig8:585505..586588Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 585506..586588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817223.6537442-CDS-P-fluviatile_contig8:583068..5831561622817223.6537442-CDS-P-fluviatile_contig8:583068..583156Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 583069..583156 -
1693571570.4191566-CDS-P-fluviatile_contig8:583068..5831561693571570.4191566-CDS-P-fluviatile_contig8:583068..583156Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 583069..583156 -
1622817223.6697-CDS-P-fluviatile_contig8:583963..5840851622817223.6697-CDS-P-fluviatile_contig8:583963..584085Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 583964..584085 -
1693571570.513005-CDS-P-fluviatile_contig8:583963..5840851693571570.513005-CDS-P-fluviatile_contig8:583963..584085Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 583964..584085 -
1622817223.6801298-CDS-P-fluviatile_contig8:584776..5850221622817223.6801298-CDS-P-fluviatile_contig8:584776..585022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 584777..585022 -
1693571570.5289092-CDS-P-fluviatile_contig8:584776..5850221693571570.5289092-CDS-P-fluviatile_contig8:584776..585022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 584777..585022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14340.1

>prot_P-fluviatile_contig8.14340.1 ID=prot_P-fluviatile_contig8.14340.1|Name=mRNA_P-fluviatile_contig8.14340.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=152bp
MMEVHFHPPEFGVLVHGTVQAVMLGAFAAIIPKINAERIREKQEGMARDE
AYAAGLLYDDEFEDEFGYAEGYVCATCDNTNEVECPKCSGKGFFFLEASA
MPKKCVYCSGLGTYGCEECAERREWLWREREARRPPRELPPARGDDFPFV
R*
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mRNA from alignment at P-fluviatile_contig8:581860..586588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14340.1 ID=mRNA_P-fluviatile_contig8.14340.1|Name=mRNA_P-fluviatile_contig8.14340.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4729bp|location=Sequence derived from alignment at P-fluviatile_contig8:581860..586588- (Porterinema fluviatile SAG_2381)
GGTTCGTCAATGCTGCTGCTATCGCAGTGTCTAGAAAGCGGCCACGCGGC
ACCTCAGATTCAACACAACACCGACTAGCAGCACCAGCACCAGCAGGAGT
GCCAGCCCCCGCGACAACTGGAAGTTTCACCGCGGCTGCGTTAGCTGGCG
GAAAAGGCGTATGGCTAGGGGCGGCTGGAGAAGGAAGAAGACGAGGAACG
CAAGGTAATATGGATGGTTGCGAGACATGTTGCAGCAGCAGCAAACTCTC
AACCCTACGCTGCATGTGTTTCCGCGAGCGAGAGGGACGAGCACACGCAG
CAACAGAGCAACCGGGGCTGGGCTAATCTCCGAATACGTGAACGCACATG
TTTGTTTCGCCGTTTCGCAAGGTCAGCCTCTCTCCCCCGTTCACCTTCCA
TACGTTTCCTTTTCAATATATATCTGCCGACCTACAGCTGTTGGCTTTGC
ACCTCGTCTTGTAAACTTTGTGGACTTCTCACACGTACCCACAGCTCCCC
ACCATACCCGTGAGTAATATCGTGTACGCCGCAGTGTATACTCGCTGAGC
TCTAAACGCTGGTGCCACTTGTACTTCGGTTTGTGGTCGAGTGCCTCGTC
ACAAAATAGGAGGCCTTGTACTTCGGTTTGTGGTCAAGTGCCTCGTCACA
AAATAGGAGGCGTTTTCAATGTTTTCAGTCTTAACTCGCTCTCAGGAACG
GATACACCCAATGTGGAAAAAGGTGGGTTGTACCTCGACAGGTGTCGGAT
GTAAGTACCCTTATCATGGTATGGCCTCCACGTTACCCCCCCCCTTCATT
GAGGCTTCTTGTTTGCTGGGCAAGAAGCCTTCTAAAGGTAAACGGAACCC
GACCGGCTGGCGGCGAGTCAACTACAGTACCATATTTCCATCCTCTTCAT
CGCGCGGTTAATGATGGGTGTCCCACGTCCATCCGCCACGATTTATCAGC
AGGTGGTTCTGAGAATCTGTGCGTTCTGTGCATTCTGTGCGTTCTATGAA
CGTTCCTTTGGAACATGGTTACGAACGTTCTTCGGCGGCTCTACCTACGG
GTCCCCCGCCGTAGTATGGCCTGGCCCGACGCCGCTTAGCTTCCACAGAT
CGCTTCGTTGACGCCATTGTGGAAAAAGGTGGCTTGTACCTCGAAAGGTG
TTTGGGAGGTAGGTACCGTTGTCAGGGTATGGCCTCCACACACAGCTCTC
CATTAGAATGAGCGCGGTCGGCGCCTGAGGCCCGCTTCACACCAAACGCA
GTAGCTCCCAAGTCAGAAGTGCGGGTTCCCGTTTTTACTGCCTACATCAA
CGAAACGAGTGAGAGGCGCGGTACTATCGCAGAGGGCGAGTGCACCCCAA
AATCAAAGCTGGCACTTCCTGTAACTGTCGAAGGGTGGACGCGGGGACGA
AGCGAAACCCTCGCGCCTGCCTGATCAACGAAAGCATAAGCATAATCAAC
CAAAAGTAGGAGTGTAATTACCCAATAACATATTGACCGTTTCTCCGTTG
AAAAAATCAGTGAGAGTAACAGCAAGCAGAGCAGCAGGCGGCGGCAACGT
GCGGAGGGGTCTGCGGATGATGGAGGTGCACTTCCACCCCCCAGAGTTCG
GCGTGCTCGTACACGGCACGGTGCAGGCCGTAATGCTCGGGGCCTTCGCG
GCCATCATCCCTAAGATAAACGCTGAGCGCATCCGGGAGAAGCAGGAGGG
CATGGCGAGAGACGAGGCGTACGCAGCGGGCTTGCTGTATGACGATGAGT
TTGAGGACGAGTTCGGGTACGCGGAGGGATACGTGTGCGCGACGTGCGAT
AACACCAATGAGGTATAGTACGGCGCGGTGCGGCGCGGCCCATCCGCGTG
TGCGTATCGTTTCCCTCAATATTAGCGGGGAGGAGAAAGCACTACATTTA
CCGTCGTGCTCCAAGGCGCAAGTGTGTATTTGAGAAAGCTTTGCAAGAAA
TCCGGGGGTTCCCGTTTTAACTTCGCTTTTTTTCGCGACAAGGTCGTGAT
GATGACGGATAATCTACAGACGGGGAGGTATTATCTCGAGCCGGGACCGC
GTTCTCCCTTTCGCCTCACAACCGACGGCGTTGTGTCGAAGTTTGTTGGC
CCAATCCAATTTTCGTGATTCCGGCATTTTGTGCATGACAAAACTTGGAG
AGAGGGTCTTCTCTTTTCGAGGCGAGCTTTTTCTCGCTTGAAAACACGGG
GGAGGGGGGGCATGTCCCTCCGTGGTCGTGGTGAATAAGGATAATCCTCC
CCGGGGTTACTCGCGCTTCGATGGTGATTGACTGCAGCAGCTTGTGCGCG
CCTTGCTCGCCTCACGCTCGGACCATTCGGCATCTCAGGCACAGGCTCCG
CGTTCCCGTAGATTCATTTTCCCGTTTCGAGATATTCGTTTCCTCACGTT
CCGATGGGGATCCTGTTTTCGGTGACTCTTCCCATCCGACACTGGTGTTT
GCCGCTTCAAAAGAACAACGCTCATTATCGCCGTTTGATGTTATTGACCG
CAGGTGGAGTGCCCCAAGTGTAGCGGAAAGGGTTTCTTCTTTTTGGAAGC
GTCGGCCATGCCCAAGAAGTGCGTCTACTGCTCGGGTCTCGGGACATATG
GATGTGAAGAGTGCGCGGAGCGACGGTCAGTATCCCCTTCCCCCGTTTTT
TCGCTTGGTGTTCCCCCAGTTTATTGCTTATGTTGGTCTTGGACGCTAGC
GCGCGTCGGTCGGCTCATCGTGCTGTTTTTTTTTGGGAGCCGTGTTTCCA
CGAACTCGAGGCGTACGTGTGTACCATGGCGCGATGCCGGCAATGTCTTG
TCTGTTTGGCAGCGGCAAAGACCAGCCGCAGCTTTTGAGCACGAGACATC
GTCATGCTACTCTTGTACTCAACTTCTCCATCAACGGGCTGTGCAAGTAC
GAAGTTTATTTTTGAGAAGTCTGTCGTTCACATGACCTGTGTTTTTCTTA
CACTCTACGTCCATGTTCAGAATACGTGGGGCACCCATTGGGGACTAGGT
TGTCAGGGGTCGTTGGAGTTAGGATGCACTCATCGTGTTACGAATTGAAA
CGTCTCAACCAACGGTGTCGATCCGTTGCCGTCGTTGCTTTGCCTCGACC
TATTGGCGTGCCTACCTCATGACGACGTTTCGACATATGTTGTTCTTATT
CACACCAACACAGGGGCCCAAGGTCACGAGGATGCCTTTTTGTGCCACAA
AATATCCGTTGGGCGCAAGCACGCCACAGAACATCAGCTAGTCGTTGAGC
GGTGCAAAGTCTGCTTGTCTATTCTCCCAACAGGGGGCGCGCGTTTTTTT
TGTTTGAGCAACATTGGGCCTCCATGGGCCAGTACGACAGCGGCACCCCC
TTACCCCATTCCACCTTAAATTTCAGCACACCTCGTTCGAACCTCCTGCC
TGTCAACAAATCTTGCGCGCGCGACCCCCCAGGGAATGGTTGTGGCGAGA
GAGAGAGGCTAGAAGGCCCCCCCGTGAGCTCCCGCCCGCACGGGGCGACG
ATTTTCCGTTCGTTCGGTGATGCCCGGTCGAAAAAAGCACAACCTTCGGA
GGCAACAATAACAACAGAACCCGCAGGCGATCGGCACGCAGTCCGTGCTG
TCGCATGGCATTCAAATCAGCCGGACGCGAGAGATACGGCTAGTTTGTGG
GTGTCTGTTCACAGCGGGGGGGGAAAGGGGAGTCGAGTCGCCGCCCGCCG
GCCCTGAACCTTCGGCGGCCATGACGCACAAATGATGTCGCTCGGTGAGC
CCACCCGTGGCGGCGGCTTCCGATTCCACGGGCGGTTCGGGTTTGTGGAC
TCTGGTGTGGCAAGATGGGAGTGGGTGTCTAATTCTACCTTGCGATAGCG
ACGACTTCAGCGGCCGAGAAAGGATGGGGTCCGATAATGAAATGATTCTG
GGCCTTGTTGAAGCGCTTTCGTTCCTTAAGTGATCGTTTGTTGTGATCGA
GAGTTGACTTTGGGCTCGACACCACGGCTGCCTCAAGGCGCACCGGCTCC
ATGGATTCTACGGACGATGGCGGATATTCTCCGCAAAGGGGGGTGCATAT
TTACAATGCGTTCTAGACGACGGTGCTCGTGTAGCAAGTGATAGCGGTCG
CTTTCCCCTCCACCCGTGATGCTGTTCATCGCTCCCCGGGCACGGAATCC
TCGGGAGGCGGGGCGTTTGGAACCCCGCAGTTCAATATGCGCACCTAAAG
CCGCGTGTGTTCGCGCTTTTGCGCCATGAGAACTATTTGTCGAGTTACGC
TGACAGTGGGCGAGCATCTCGCGTTGGAGTTGTACGGACGTTTCATTTCG
CGTCCAGAGTTTTTTGGCGTCCGTCTTAGTGTGTGACAAGTCCATTCCCC
ATGTCCAATGCGTCATGGCAGGTTGCAATCTGCGAAGGTTTTCCAGCGTG
TCCTCACTTTTCTTCACGCGTCGTGGATTCTACGCCACTCGTGAGTTCTC
GCGGTGTTCCGTGGCCGGTTCTACGTCCCCGACGCATGCGAAGCATTTCA
AATGCGGCAGCGAGAGGAGGCGTACCGCGGCACAGTTTCCATCTCTTCAC
TTATGTGATCAACTTCAAGTCTTCGCAGGGTCGTTTTATGTAATCTTTGT
TGTTGCATTATCTTTATCGAAAGACTACCAAGAGAGACACATGCACGAGG
AGACGTATTCATCAGACCCGTCAAGAGTTAATCCCAGCGCGGGAGCGAGG
AGTGAGTTAGCTCCCTTGTTAGTGCCAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:581860..586588-

>mRNA_P-fluviatile_contig8.14340.1 ID=mRNA_P-fluviatile_contig8.14340.1|Name=mRNA_P-fluviatile_contig8.14340.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=912bp|location=Sequence derived from alignment at P-fluviatile_contig8:581860..586588- (Porterinema fluviatile SAG_2381)
ATGATGGAGGTGCACTTCCACCCCCCAGAGTTCGGCGTGCTCGTACACGG
CACGGTGCAGGCCGTAATGCTCGGGGCCTTCGCGGCCATCATCCCTAAGA
TAAACGCTGAGCGCATCCGGGAGAAGCAGGAGGGCATGGCGAGAGACGAG
GCGTACGCAGCGGGCTTGCTGTATGACGATGAGTTTGAGGACGAGTTCGG
GTACGCGGAGGGATACGTGTGCGCGACGTGCGATAACACCAATGAGATGA
TGGAGGTGCACTTCCACCCCCCAGAGTTCGGCGTGCTCGTACACGGCACG
GTGCAGGCCGTAATGCTCGGGGCCTTCGCGGCCATCATCCCTAAGATAAA
CGCTGAGCGCATCCGGGAGAAGCAGGAGGGCATGGCGAGAGACGAGGCGT
ACGCAGCGGGCTTGCTGTATGACGATGAGTTTGAGGACGAGTTCGGGTAC
GCGGAGGGATACGTGTGCGCGACGTGCGATAACACCAATGAGGTGGAGTG
CCCCAAGTGTAGCGGAAAGGGTTTCTTCTTTTTGGAAGCGTCGGCCATGC
CCAAGAAGTGCGTCTACTGCTCGGGTCTCGGGACATATGGATGTGAAGAG
TGCGCGGAGCGACGGTGGAGTGCCCCAAGTGTAGCGGAAAGGGTTTCTTC
TTTTTGGAAGCGTCGGCCATGCCCAAGAAGTGCGTCTACTGCTCGGGTCT
CGGGACATATGGATGTGAAGAGTGCGCGGAGCGACGGGAATGGTTGTGGC
GAGAGAGAGAGGCTAGAAGGCCCCCCCGTGAGCTCCCGCCCGCACGGGGC
GACGATTTTCCGTTCGTTCGGTGAGGAATGGTTGTGGCGAGAGAGAGAGG
CTAGAAGGCCCCCCCGTGAGCTCCCGCCCGCACGGGGCGACGATTTTCCG
TTCGTTCGGTGA
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