mRNA_P-fluviatile_contig8.14337.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14337.1
Unique NamemRNA_P-fluviatile_contig8.14337.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:558013..558768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size756
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14337.1prot_P-fluviatile_contig8.14337.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 558249..558647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.699915-UTR-P-fluviatile_contig8:558012..5582481622817217.699915-UTR-P-fluviatile_contig8:558012..558248Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 558013..558248 +
1693571543.102029-UTR-P-fluviatile_contig8:558012..5582481693571543.102029-UTR-P-fluviatile_contig8:558012..558248Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 558013..558248 +
1622817217.7247283-UTR-P-fluviatile_contig8:558647..5587681622817217.7247283-UTR-P-fluviatile_contig8:558647..558768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 558648..558768 +
1693571543.1258056-UTR-P-fluviatile_contig8:558647..5587681693571543.1258056-UTR-P-fluviatile_contig8:558647..558768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 558648..558768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.714596-CDS-P-fluviatile_contig8:558248..5586471622817217.714596-CDS-P-fluviatile_contig8:558248..558647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 558249..558647 +
1693571543.1160085-CDS-P-fluviatile_contig8:558248..5586471693571543.1160085-CDS-P-fluviatile_contig8:558248..558647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 558249..558647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14337.1

>prot_P-fluviatile_contig8.14337.1 ID=prot_P-fluviatile_contig8.14337.1|Name=mRNA_P-fluviatile_contig8.14337.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=133bp
MTSTKKQERGERTQDKHTRRQRLGHTRTPRWKNQKHTTIDSRVLVNRSVD
TDAYSAATKHVDTQRQSHVVSNSHHMPLNKNTGHVGQLRNVKSFSNLAPR
GRSQMPNPSYLPHSPFENPNSFVRDEKSQHPP*
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mRNA from alignment at P-fluviatile_contig8:558013..558768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14337.1 ID=mRNA_P-fluviatile_contig8.14337.1|Name=mRNA_P-fluviatile_contig8.14337.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=756bp|location=Sequence derived from alignment at P-fluviatile_contig8:558013..558768+ (Porterinema fluviatile SAG_2381)
ACTGCGGTCGGCTTGGAGGGCGTGTGCCATCATTTGTCCAACGCGCTTGT
GTGTGCATTTCAGTCCATGAGAGTGAAGCCATACACCAACCTGCCCTACG
CTGTTCCACAGCGTGAGAAGGAAACGCTCTCCTCCGAGAACAAACCGGTC
TTCATCCGTTGGGTCACCTCACCTGACCAATTCCGCGGGGACCAACCCAT
ACAAGTACATTCAGTTTGTATCACGGCAGTTAGGGGATGACGTCAACCAA
GAAGCAGGAGAGAGGGGAAAGGACACAAGATAAACACACGCGCAGGCAGC
GGCTGGGCCATACCAGAACCCCAAGGTGGAAAAACCAAAAACACACAACA
ATCGATTCACGTGTCCTCGTTAATCGATCTGTGGACACCGACGCCTACTC
CGCGGCGACCAAACACGTCGACACTCAAAGACAGTCCCATGTCGTGAGCA
ATTCACACCACATGCCCCTCAACAAGAACACGGGACACGTAGGACAACTC
CGAAACGTTAAAAGCTTTTCAAATCTTGCGCCACGGGGCCGAAGCCAAAT
GCCCAATCCTTCCTATCTCCCCCATTCTCCATTCGAAAATCCGAACTCAT
TCGTTCGGGACGAAAAATCGCAACATCCTCCGTGAACGCCTGCCAAAGAA
GCGCACACATCAGGACGATTCAACAGCCCCCCCGCTCCCTCCCCTCCGAT
CCATCCCATACGAACCCCCCTTGGCGCGTCCCATGAGCCGGAACACCCGA
CCCCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:558013..558768+

>mRNA_P-fluviatile_contig8.14337.1 ID=mRNA_P-fluviatile_contig8.14337.1|Name=mRNA_P-fluviatile_contig8.14337.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=798bp|location=Sequence derived from alignment at P-fluviatile_contig8:558013..558768+ (Porterinema fluviatile SAG_2381)
ATGACGTCAACCAAGAAGCAGGAGAGAGGGGAAAGGACACAAGATAAACA
CACGCGCAGGCAGCGGCTGGGCCATACCAGAACCCCAAGGTGGAAAAACC
AAAAACACACAACAATCGATTCACGTGTCCTCGTTAATCGATCTGTGGAC
ACCGACGCCTACTCCGCGGCGACCAAACACGTCGACACTCAAAGACAGTC
CCATGTCGTGAGCAATTCACACCACATGCCCCTCAACAAGAACACGGGAC
ACGTAGGACAACTCCGAAACGTTAAAAGCTTTTCAAATCTTGCGCCACGG
GGCCGAAGCCAAATGCCCAATCCTTCCTATCTCCCCCATTCTCCATTCGA
AAATCCGAACTCATTCGTTCGGGACGAAAAATCGCAACATCCTCCGTGAA
TGACGTCAACCAAGAAGCAGGAGAGAGGGGAAAGGACACAAGATAAACAC
ACGCGCAGGCAGCGGCTGGGCCATACCAGAACCCCAAGGTGGAAAAACCA
AAAACACACAACAATCGATTCACGTGTCCTCGTTAATCGATCTGTGGACA
CCGACGCCTACTCCGCGGCGACCAAACACGTCGACACTCAAAGACAGTCC
CATGTCGTGAGCAATTCACACCACATGCCCCTCAACAAGAACACGGGACA
CGTAGGACAACTCCGAAACGTTAAAAGCTTTTCAAATCTTGCGCCACGGG
GCCGAAGCCAAATGCCCAATCCTTCCTATCTCCCCCATTCTCCATTCGAA
AATCCGAACTCATTCGTTCGGGACGAAAAATCGCAACATCCTCCGTGA
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