mRNA_P-fluviatile_contig8.14335.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14335.1
Unique NamemRNA_P-fluviatile_contig8.14335.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: D7G240_ECTSI (Trafficking protein particle complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G240_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 9.230e-90
Identity = 136/146 (93.15%), Postives = 140/146 (95.89%), Query Frame = 3 
Query:  279 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSTNPASAGLHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEEYLRSLTCFKS 716
            MIYNLYIFNRKGKCLYYREWNRPQNTLENAAD+GEEQRLMFGMLYSLKE+VTKMST+PASAGLH LKT SYTLHHLETGSG RFVLNTDNNAGDLRPTLR LYS IFVEYVAKHPQFNPVDGSPIRLPAFD+RLEEYLRSL CFKS
Sbjct:    1 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADDGEEQRLMFGMLYSLKEVVTKMSTDPASAGLHALKTDSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRQLYSGIFVEYVAKHPQFNPVDGSPIRLPAFDSRLEEYLRSLACFKS 146
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: A0A835ZQ36_9STRA (Trafficking protein particle complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ36_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.720e-52
Identity = 88/144 (61.11%), Postives = 106/144 (73.61%), Query Frame = 3 
Query:  279 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSTNPASAGLHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEEYLRSLTCF 710
            MI+N YIFNR GKCL+Y+EWNRPQNTL++  D+GEE+RLMFGMLYSL+ELV KM        L    T SYTL+  ET SG RFVLNTDN AGDL   LRH+Y +IFV+ V KHP F P  G P++LP F+  LE+Y++SL CF
Sbjct:    1 MIFNFYIFNRNGKCLFYKEWNRPQNTLQH--DDGEEKRLMFGMLYSLQELVGKMGGGDGKGALQSFTTDSYTLNFFETASGLRFVLNTDNRAGDLTAILRHIYGNIFVDLVVKHPMFEPKAGVPLQLPMFEEELEKYMKSLPCF 142
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: A0A7S2AMS8_9STRA (Trafficking protein particle complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMS8_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.780e-52
Identity = 86/145 (59.31%), Postives = 112/145 (77.24%), Query Frame = 3 
Query:  279 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSTNPASAGLHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEEYLRSLTCFK 713
            MIYN YIF+R+G CLYYREWNRP ++  +  D  EE++L+FGML+S+KELV++MS+ P + GLH LKT ++TLHHLET SG RFVLNTD + GDLRP+LRH++SSIFVEYV K+P ++ +   PI  P F   L  YL SL+CF+
Sbjct:    1 MIYNFYIFDRRGTCLYYREWNRPYSSFSDY-DAAEERKLVFGMLFSIKELVSRMSSRPGTEGLHCLKTNNFTLHHLETASGLRFVLNTDGDTGDLRPSLRHIFSSIFVEYVIKNPLYDRLSTEPIDSPLFSRHLGVYLESLSCFR 144
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: A0A7S2RBL8_9STRA (Trafficking protein particle complex subunit n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBL8_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.660e-51
Identity = 86/152 (56.58%), Postives = 115/152 (75.66%), Query Frame = 3 
Query:  279 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSTNPASAGLHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEEYLRSLTCFKS*LIPCG 734
            MIYNLYIFNRKG CLYYREW RP N+     D+ EE++L+FGML+S+KE+V++M+   A AGL  ++TG++TLHHLET +GFRFVLNTD    DLR  L+H+YS IFVEYV K+P F+P+  + I +P FD+ L EY++ L+CF+S  +  G
Sbjct:    1 MIYNLYIFNRKGVCLYYREWKRPFNSFP-PDDQDEERKLVFGMLFSIKEMVSRMTPRTADAGLSSIQTGNFTLHHLETVTGFRFVLNTDTATTDLRQNLQHIYSEIFVEYVLKNPLFDPMTSTSIEIPLFDSNLSEYIQLLSCFRSGAVVSG 151
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: A0A812VIE8_SYMMI (Trafficking protein particle complex subunit n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VIE8_SYMMI)

HSP 1 Score: 155 bits (392), Expect = 8.510e-41
Identity = 71/141 (50.35%), Postives = 103/141 (73.05%), Query Frame = 3 
Query:  279 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSTNPASAGLHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEEYLRSL 701
            MIYNLYI++RKGKCL+Y+EW+RP NTL  A D GEE+RLMFGML+SLK+L  K++ +    GLH +KT +YTLHH E+ +G  F++N+D +  DL   L+H+Y++IFVE V ++P +       I  P F+ +LE+Y+R++
Sbjct:    1 MIYNLYIYDRKGKCLFYKEWSRPMNTL--ADDPGEEKRLMFGMLFSLKDLAAKLAPSIGPQGLHTVKTNAYTLHHFESVTGMSFIMNSDPSLPDLYHNLQHIYNNIFVECVIRNPLYRHCPHDAIDCPLFEKKLEDYVRTI 139
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: A0A4D9D8U8_9STRA (Trafficking protein particle complex subunit n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8U8_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.800e-39
Identity = 83/150 (55.33%), Postives = 108/150 (72.00%), Query Frame = 3 
Query:  279 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSTNPA---SAGLHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDG-SPIRLP-AFDARLEEYLRSLTCFK 713
            MIYNLYIF+R+G CL+YREW RP NTL  A D  EE++LMFGMLYS+K LV  + +  A   S GL+ L+T +YTLHH ET +G RFVLNTDN+  D+R  LRH+YS I+V++V ++PQ+   +G S  RLP AF   LE+Y+ +L  FK
Sbjct:    1 MIYNLYIFDRRGACLFYREWCRPLNTL--AEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSGIWVQHVVQNPQYKIGEGGSAGRLPPAFAQSLEQYVTNLPGFK 148
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: A0A067CRD6_SAPPC (Trafficking protein particle complex subunit n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRD6_SAPPC)

HSP 1 Score: 147 bits (372), Expect = 6.650e-38
Identity = 71/148 (47.97%), Postives = 96/148 (64.86%), Query Frame = 3 
Query:  279 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMS---TNPASAGLHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEEYLRSLTCFK 713
            MIYNLYIFNR G CL Y EWNR  + +   +D  EE+RLMFG+++SLKE + KM+   +  +S  L   KT +YT HHLET SG RF+L +DNN GDL+  L+HLY +++VE V K+P  +     PI+   F   +  Y+ SL CF+
Sbjct:    1 MIYNLYIFNRAGACLLYEEWNRSSDAM-TLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVHDAKSTKPIKCKLFRHSVRHYMESLPCFR 147
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: A0A7R9YCB9_9STRA (Trafficking protein particle complex subunit n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCB9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.170e-37
Identity = 75/151 (49.67%), Postives = 98/151 (64.90%), Query Frame = 3 
Query:  264 ARVVNMIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSTNPASAG-----LHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEEYLRSL 701
            A+   MI+N+YIF+R G CL+Y+EW+RP NTL    D GE+ RLMFGML+SLKE+V KMS   A  G     + V++T +Y+ H  ET +G RFVLN D  A  LR  L  +Y+ IFVE V K+P ++P DG P     F+  LE YLR+L
Sbjct:   31 AQGQGMIFNMYIFSRSGSCLFYKEWHRPLNTLSGEEDPGEDARLMFGMLFSLKEIVGKMSGRSAEKGERREDIQVMRTSTYSTHLYETQTGLRFVLNVDAAAPSLRGELEEIYAGIFVEKVIKNPLYDPRDGPPEIPEDFEEELEAYLRAL 181
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: A0A6A4ZH59_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZH59_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.850e-36
Identity = 71/149 (47.65%), Postives = 97/149 (65.10%), Query Frame = 3 
Query:  279 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMS---TNPASAGLHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEEYLRSLTCFKS 716
            MIYN YIFNR G CL Y EWNR  + +    D  EE+RLMFG+++SLKE + KMS   + P +  L   KT  YT HHLET SG RF+L+TDN +GDL+  L+++Y +++VE V K+P  +     P++   F A ++ Y+ SL CFKS
Sbjct:   17 MIYNFYIFNRSGACLMYEEWNRSNDAM-TLNDAEEEKRLMFGLIFSLKEFLRKMSPPTSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDNQSGDLQEALQYMYGNLYVELVTKNPVHDARSTKPVKCKLFRANIKAYIESLACFKS 164
[Close]
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Match: A0A7S3HIB3_9STRA (Trafficking protein particle complex subunit (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIB3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.100e-33
Identity = 66/139 (47.48%), Postives = 95/139 (68.35%), Query Frame = 3 
Query:  279 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKELVTKMSTNPASAGL---HVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLRHLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEE 686
            M +N YIFNRKGKCL+Y+EW+RP N +  A D  EE++L+FGML+SLK+L +K+S  P   GL   H +KT ++TLHH ++ SG  FVLNT  +  D    L+H+YS+IFVE +A++P +      P++   F +RLE+
Sbjct:    1 MFHNFYIFNRKGKCLFYKEWDRPVNKM--ADDPEEEKKLVFGMLFSLKDLTSKLS--PDGQGLDHLHTVKTNAFTLHHYQSPSGLMFVLNTHPDVADFHNNLQHVYSNIFVECIARNPLYKHKPDEPLKCALFVSRLED 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G240_ECTSI9.230e-9093.15Trafficking protein particle complex subunit n=2 T... [more]
A0A835ZQ36_9STRA1.720e-5261.11Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2AMS8_9STRA1.780e-5259.31Trafficking protein particle complex subunit n=1 T... [more]
A0A7S2RBL8_9STRA1.660e-5156.58Trafficking protein particle complex subunit n=2 T... [more]
A0A812VIE8_SYMMI8.510e-4150.35Trafficking protein particle complex subunit n=1 T... [more]
A0A4D9D8U8_9STRA2.800e-3955.33Trafficking protein particle complex subunit n=1 T... [more]
A0A067CRD6_SAPPC6.650e-3847.97Trafficking protein particle complex subunit n=3 T... [more]
A0A7R9YCB9_9STRA3.170e-3749.67Trafficking protein particle complex subunit n=1 T... [more]
A0A6A4ZH59_9STRA3.850e-3647.65Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S3HIB3_9STRA3.100e-3347.48Trafficking protein particle complex subunit (Frag... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:543085..547271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.6
Seed ortholog evalue6.7e-75
Seed eggNOG ortholog2880.D7G240
Preferred nameTRAPPC1
KEGG koko:K20300
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005768,GO:0005773,GO:0005775,GO:0005793,GO:0005794,GO:0005801,GO:0005829,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006955,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0022607,GO:0030008,GO:0030141,GO:0031267,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042582,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060205,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090114,GO:0097708,GO:0098772,GO:0099023,GO:0099503,GO:1990070,GO:1990071,GO:1990072
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3368@1,KOG3368@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSybindin-like protein
Ec32 orthologEc-11_002250.1
Exons3
Model size2089
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14335.1prot_P-fluviatile_contig8.14335.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 544455..546993 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817223.3201284-UTR-P-fluviatile_contig8:543084..5444541622817223.3201284-UTR-P-fluviatile_contig8:543084..544454Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 543085..544454 -
1693571569.6541739-UTR-P-fluviatile_contig8:543084..5444541693571569.6541739-UTR-P-fluviatile_contig8:543084..544454Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 543085..544454 -
1622817223.3687785-UTR-P-fluviatile_contig8:546993..5472711622817223.3687785-UTR-P-fluviatile_contig8:546993..547271Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 546994..547271 -
1693571569.9595265-UTR-P-fluviatile_contig8:546993..5472711693571569.9595265-UTR-P-fluviatile_contig8:546993..547271Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 546994..547271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817223.3305595-CDS-P-fluviatile_contig8:544454..5447511622817223.3305595-CDS-P-fluviatile_contig8:544454..544751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 544455..544751 -
1693571569.9106345-CDS-P-fluviatile_contig8:544454..5447511693571569.9106345-CDS-P-fluviatile_contig8:544454..544751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 544455..544751 -
1622817223.3406854-CDS-P-fluviatile_contig8:545597..5457081622817223.3406854-CDS-P-fluviatile_contig8:545597..545708Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 545598..545708 -
1693571569.9357073-CDS-P-fluviatile_contig8:545597..5457081693571569.9357073-CDS-P-fluviatile_contig8:545597..545708Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 545598..545708 -
1622817223.351535-CDS-P-fluviatile_contig8:546960..5469931622817223.351535-CDS-P-fluviatile_contig8:546960..546993Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 546961..546993 -
1693571569.9507747-CDS-P-fluviatile_contig8:546960..5469931693571569.9507747-CDS-P-fluviatile_contig8:546960..546993Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 546961..546993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14335.1

>prot_P-fluviatile_contig8.14335.1 ID=prot_P-fluviatile_contig8.14335.1|Name=mRNA_P-fluviatile_contig8.14335.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=147bp
MIYNLYIFNRKGKCLYYREWNRPQNTLENAADEGEEQRLMFGMLYSLKEL
VTKMSTNPASAGLHVLKTGSYTLHHLETGSGFRFVLNTDNNAGDLRPTLR
HLYSSIFVEYVAKHPQFNPVDGSPIRLPAFDARLEEYLRSLTCFKS*
back to top

mRNA from alignment at P-fluviatile_contig8:543085..547271-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14335.1 ID=mRNA_P-fluviatile_contig8.14335.1|Name=mRNA_P-fluviatile_contig8.14335.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4187bp|location=Sequence derived from alignment at P-fluviatile_contig8:543085..547271- (Porterinema fluviatile SAG_2381)
CGGTTAGGCGGAAGGCCAGGCAGTAGGAAGGTCGCTCATCGCTCTTAGCC
ATCCTGACGACCTCTGATCGAGCCTATTGCAACACACGCATCCTTGGTGG
CTGTGTTCTTCCACGCGGAATCGCTTCCTACGTTGGAGTACTCGCTCTGT
ACACAGCAGCAGAGGACTAACACCCTCGACGAGCACGGGCCTCTGACCCA
GCTGTGGCAGAAAGGAGATCAGGCCAGCTCCCCGGAGGGCAGTGCGGGCG
GCGGCTTGTGTGAGCCCGTGTGGTAAATATGATCTACAATCTTTACATAT
TCAACAGAAAGGTGCGCGTATTCACAGGTTGCAGTTTGATGTGGCATGTC
GAGTGGAGAAGTTCCTGCGGTGCATATCTTGCTTCTGGACAAAGCACAGA
CGGAGGCGTCTATTGCGAGGCTCTACAATTCTAGCTGCATAACAGGAACA
CGTTCGGTGATGCGCATGAGTCAAGCCCTCTAACTACGTCGTCGGAGCCT
ATCCAGCAACGCATCATCGTTCAGTGTTCGCAGCGCGTCCTTCCTTCTCA
TGAAAAAATCTACCTTCGTAACTCCAATGGCCGCGGTAAAAAATCGTGGA
AATCAAAAGGAAGGTGTTGGATTATGTGTACCTGTGGATCGTGGATGTGA
AGGAAGACTGGGCATAGGGTACAGGATCGTGGGTGTGAAGGGAGGGCTCG
GGGTATAGGGTGCGAAACAACGGTGAGCGCGCTCGTTGTTCCTCCCTCGG
CTCTCGGTCAAACATCACCATGACCGCGCTTCATTGTTCGAGTAGAAGCC
CTCATTAAAATTGCCGCTTGGAGAGGGGGCAGGGTAAACTAACAAATGGA
TCTCGGTGTCCTGGAAAACGGTTCACACGAGCAGTTCTGGTACATTGACC
TACCTGTATACCACCCCGCGACCTATGAATGGTGTATCAGCAGTATGCTT
ACGACAAACCTCATGGGATGCAAGAGTATTCGGTGGGAGTGCTGAGGGGC
GCAAGTTGCGGATGTTGCCGAGATGCCGTTCTTCTTGCAGGTGGAATGCA
AGCGAGCATTCGTCGGTACAGACAACCAAAGGATTAACCAACAAATGCCC
ATCAAGCTACCGGGCCCGTAACCCGGACCCTGATAAGTTGAGGCCCCAGA
TTCCCGAAACCAGCATTTTCCCCAGCGTACAGCTGGCCGCGGGTGGGAAG
TCCAGCGACCTCGGAATGAACTAGAAACAGGGCGTGAGTACCGATGTGCC
CCATTCTATCCCCGTACCCTTTTGTCCCCCTACGCCAGTGTGACTAGACC
AAGCTTGTGTATGTGTGGATAATGGGTGGGGGGCACGCGACATTAACTAT
TTTTGTGCTTCGGGGGGTGAACTTGATTGGCAACCCCAGGGCGCTCAACA
TTGTCCCATCTACCCCCCTCACAACGGTCGTGATACATGCAATCCGGACT
CAATGTCACGGCCAACGTCGAACCCACCTTTACACGCGCGCGCGCGCATG
TATCGCTGCTTTGCTCGAATTTTTGCTTTGCGCCCGCATGGCGGCGGCGG
CGGCGGCGAGCAGGGCAAGTGCCTGTACTACCGGGAGTGGAACCGGCCGC
AGAACACGCTGGAGAACGCCGCCGACGAAGGGGAGGAGCAACGGCTCATG
TTTGGAATGCTATACTCCCTTAAGGTGCGTCGGTCGGACGATGACGCGGC
AAGCGGGCCGTCTCGGCGCCTCGAAACCAATCACGGCGTGGACGAAGACC
GGCCGCCACCGGGGAATGTCGTTGCTCGGAGACAGGTTTGTGTGTGCCGT
TCAGGAAAGCGTGCACGACGCGGGCCGCATCCACAGCGATCAATCGTGTG
GGCGAAAACCAGCCGCCGCCGAGGGTGCTGTTGCTCGGCGGCGGCCGGTC
GTGTGCTGTTGGAGATGAGGACACGAAACGCAGACCGCATGAGCCGCAAC
CAACCACGTGGTCAAGAACCCGCGACCACTGCGTCATGCACAGCGTCTTT
GCCTGGAATTTTCGAATTTTCGTTCTCAGCCTGCTGCGGAAGGTTCCACT
GAGAACAATGTTTTCGTTTAGAGATGTGTCATATCTCCCGCTGCCCTTCG
CCTTCCGTTTCCCCGGAATACCCCGCCCTTCGCTCTTCGTCCCTCTCCTT
CCACACAAAGTTCGCGTGCACTTCAAATCTCAATCTAGTATTTGCCGCAC
CTTTCACAATCCGTTGCGTTTTTGACGCGGCAGCACCTCAGTTGATTCTC
CCAAACAAGTTTCGTACTTTTCCTCGTCGCTCCTCCCTGCAGTTTCATGG
CACACCTGTCCACAGATCAAACGCAACCAACGACACACATGAACAAGCGA
GCAAAGAAGCGAAGAAGCGAAGAAGCGTGCAATATATAAAACATACAAAC
ATACAAGCAAACAAGCGAGCAAATCAAACAACGAACGATCGAGCAAAATC
AACAATATGCAAGCTCGCTCGACCTCCATCCAACCCCGCCCCCCGTCCCT
TCCCCCTGTCCCCCCTTTAGGAGCTGGTTACGAAAATGTCGACGAACCCG
GCGTCCGCCGGGCTCCACGTCCTCAAGACAGGGTCCTACACCCTCCACCA
CCTCGAGACCGGCAGCGGGTTTCGGTTCGTGCTCAACACGGACAATAACG
CCGGGGACCTGCGGCCGACACTACGGCACCTGTACTCGAGCATCTTCGTC
GAGTATGTGGCCAAGCATCCGCAGTTCAACCCTGTAGACGGTAGCCCCAT
CCGGCTGCCGGCCTTTGACGCGCGGCTAGAGGAGTATCTGCGGAGCCTGA
CCTGCTTCAAGTCTTGATTGATCCCTTGCGGACCCCCTACTGTGTATCGT
TCGTCGCTCTCCGTGCCAGTAAGTACGCGTCTGTCCCGTCGCCAAGGGCA
CAAAGCAGCACTCCGCCTGTCAGCCCCCCTCAAAACGTTGATACTTGTGT
GTGGTAGTCGTTTGAAGATCGGCACTGCTTGTTTTGCTCGGTCGGTGTCG
AACCCACCCCCACGAGTCCGATAGAAGCGTGTATTGTACGGCGCATGTGT
GTGGCTTGGCGCGTGTTGGGCTAATGCAGAGTGTTGGAGTGTTCGCGAGG
CGTGGCGGGGATGCGTACTGCCAGATCTGTCGCCTTTTTCTACATCTTTC
CTTTCCTCGAATCATTCCGTTCAGGGATTGGGCTTTGTCCTCGCATGTTC
GTCGCGCCTATGGGTGAATTCACATCAACGGAACCGCTTCTGAAGTGTTT
GGCGATTCTTCGCAGAGGTTGCGAGACCAGAAATCTGCTGACTGTGGTGA
CGGGCTTGCGCACGCGTGTTGACATCTTCCCGCTCGCAGTGCAGCCGCGC
ATACCGTGTAGGAAGGTTTGACCGTAACTTCGAGAAACACGAGTGAGCTG
CAGCCCCCCGATTGGTGTGCGACACGGCAGGGCTCAAGCCAACTCCCCGG
AGCGCTTCGAGACTCGAGTTCGGTGTTATTGTCCCCCCGCAACCTGGCCA
ATAGCTTTCGTTCGGCGTGCTAATTTCTTTCGATGGGTTTGCTCTGCACT
CGTCCCTTGTTCCAAGGGCTGCTGTTGTGTTTGCTCCTGTGCTTGAAATG
TTCAACATCTAGTCGTTGGTCTTGTACGTCTCCAGCACGTGAACAGCCGT
ATCCACAGCTGTGAGGAACCAAGGGACAAGTGGAGTTCAGTACTGGGAAA
GAAGGATGAGCCTGATCCGGTCTTGAGGCCTGGTAGCTTTGGGAGTTCAA
AAGTCTTTGTACATCCCACTGCGTCTGGGACGAATGGCGGGCTTCGTCCA
CGCGGGGGAGATAGAGCGTGAAACAAGGAGTGGGAGCGAGTGGCCGATGA
GCGATCCCCCCCGGACGGGCGATGAATGAAGAACAAGTTGTGGACAACCT
GAGCCCTGGATAACGAATGAGTCGTGTATTTGTCGGGAAGGTGAAGGGCA
CGACTTGGGCAAACACTAATTTCTGCGGGGACGGATTATCCGGTTGGAGA
TAGACCGCTGACCTTTTGTGCAAAAATTCAAAGCTGAAAAATGCAGGGGT
TTCCTAAGTCAGAGACGGACTCTTCAGCAGGTCCCGACTTGAGACTTGAG
TACTACACCGGGGGCGGAATTGCCCACCCTGGCGTTGGTACAGGCCTTGT
TCTGGCCAGCTTGGTGTGCATGCCTTCGAGAGTCTAA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig8:543085..547271-

>mRNA_P-fluviatile_contig8.14335.1 ID=mRNA_P-fluviatile_contig8.14335.1|Name=mRNA_P-fluviatile_contig8.14335.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=882bp|location=Sequence derived from alignment at P-fluviatile_contig8:543085..547271- (Porterinema fluviatile SAG_2381)
ATGATCTACAATCTTTACATATTCAACAGAAAGATGATCTACAATCTTTA
CATATTCAACAGAAAGGGCAAGTGCCTGTACTACCGGGAGTGGAACCGGC
CGCAGAACACGCTGGAGAACGCCGCCGACGAAGGGGAGGAGCAACGGCTC
ATGTTTGGAATGCTATACTCCCTTAAGGGCAAGTGCCTGTACTACCGGGA
GTGGAACCGGCCGCAGAACACGCTGGAGAACGCCGCCGACGAAGGGGAGG
AGCAACGGCTCATGTTTGGAATGCTATACTCCCTTAAGGAGCTGGTTACG
AAAATGTCGACGAACCCGGCGTCCGCCGGGCTCCACGTCCTCAAGACAGG
GTCCTACACCCTCCACCACCTCGAGACCGGCAGCGGGTTTCGGTTCGTGC
TCAACACGGACAATAACGCCGGGGACCTGCGGCCGACACTACGGCACCTG
TACTCGAGCATCTTCGTCGAGTATGTGGCCAAGCATCCGCAGTTCAACCC
TGTAGACGGTAGCCCCATCCGGCTGCCGGCCTTTGACGCGCGGCTAGAGG
AGTATCTGCGGAGCCTGACCTGCTTCAAGTCTTGAGAGCTGGTTACGAAA
ATGTCGACGAACCCGGCGTCCGCCGGGCTCCACGTCCTCAAGACAGGGTC
CTACACCCTCCACCACCTCGAGACCGGCAGCGGGTTTCGGTTCGTGCTCA
ACACGGACAATAACGCCGGGGACCTGCGGCCGACACTACGGCACCTGTAC
TCGAGCATCTTCGTCGAGTATGTGGCCAAGCATCCGCAGTTCAACCCTGT
AGACGGTAGCCCCATCCGGCTGCCGGCCTTTGACGCGCGGCTAGAGGAGT
ATCTGCGGAGCCTGACCTGCTTCAAGTCTTGA
back to top