mRNA_P-fluviatile_contig8.14332.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14332.1
Unique NamemRNA_P-fluviatile_contig8.14332.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14332.1 vs. uniprot
Match: A0A6H5L777_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 8.420e-5
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:  169 ALEAISPDEIEVTPPVAAPKKRLKARKLTA 258
            ALE ISPDEIE TPPV APKKRLKARKL A
Sbjct: 1488 ALEVISPDEIETTPPVPAPKKRLKARKLAA 1517
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L777_9PHAE8.420e-586.67BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:533821..534930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817223.2316756-CDS-P-fluviatile_contig8:533820..5339111622817223.2316756-CDS-P-fluviatile_contig8:533820..533911Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 533821..533911 +
1693571569.624672-CDS-P-fluviatile_contig8:533820..5339111693571569.624672-CDS-P-fluviatile_contig8:533820..533911Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 533821..533911 +
1622817223.2448006-CDS-P-fluviatile_contig8:534657..5349291622817223.2448006-CDS-P-fluviatile_contig8:534657..534929Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 534658..534929 +
1693571569.6336777-CDS-P-fluviatile_contig8:534657..5349291693571569.6336777-CDS-P-fluviatile_contig8:534657..534929Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 534658..534929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14332.1prot_P-fluviatile_contig8.14332.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 533821..534929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14332.1

>prot_P-fluviatile_contig8.14332.1 ID=prot_P-fluviatile_contig8.14332.1|Name=mRNA_P-fluviatile_contig8.14332.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=121bp
RKEEGVPGRPRESGIRVRGRRQAVCDGKCAECSTCVSRFRAEGANEGAGA
QGGAPPALEAISPDEIEVTPPVAAPKKRLKARKLTAAAAAAAQATATGEA
VRAESLPAAAAATTARRQEDG
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mRNA from alignment at P-fluviatile_contig8:533821..534930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14332.1 ID=mRNA_P-fluviatile_contig8.14332.1|Name=mRNA_P-fluviatile_contig8.14332.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1110bp|location=Sequence derived from alignment at P-fluviatile_contig8:533821..534930+ (Porterinema fluviatile SAG_2381)
CGGAAGGAAGAAGGGGTGCCCGGGAGGCCGAGGGAGTCCGGAATCCGCGT
GCGGGGGCGGCGACAGGCCGTCTGCGATGGAAAATGTGCAGGTGGGGGGC
ATGGGGTCGTAAGGAAAGGGTACGGAGAGAGGGAAGGGGGCGGGGGTGAG
GAAGGGAATGCTGTACGTTGAAGCTGACTCCTTGGTCAAACCCTTCGCAA
AATGTTTCCGCAGTTTTGTGTTGAGCTGGGGGCAAGCTGGCGGTGGTTCC
CGAGAGGTTGCAACAAGGAAAACCATCAAGGCGCGAAGGGATTCTGTGAG
GCAAGCCGCAACACATCGAAAGGATGAGGCGAATAATTCCAGCGAGCAAC
TTAATCGTGTCACGTCGCTCCCTTCCCCTGCCGCCCGAAACAATAAAAAG
AACATGCAGCGGCCGGCTGCAGTGAACACCCCTACCACGTGTTCGCCTTT
TTCTTGAAGCCTGCCAATATCTTCCTCGCCGACACGTGCTCCGGCCATTT
TCGCCTGTGATCACCCACGACCATGCAGCGCCACACCCGGCGAGCGTCGC
GGAGGAAAGCGGTCGGGTCTTTGTTTCTGCCAAGCGGCGTGTAAGGCAGG
CAGCGTTCTGCCCGACGGATCCGCTAAAGTGTTGTGGAGAAGAAATACAC
TCTAATCTCTCTGCTTCTTTTTTCTTACGGCGGCGCTTCCTGATTGTTTT
TGTACTTATTTTTGATTCACGCGCCGGTGCCAAGGGCCTGCCTGCCTGCC
TGCCTGCCTGCCTGCCTACCTGACCGCCGCCCTTCGTGCCTTGCCCGCTG
CCCGCTTTCCCATGGAATTTTTTTTCCCTGCATTTAGAATGTTCGACCTG
TGTGTCTCGTTTCCGTGCAGAAGGAGCAAATGAAGGAGCAGGAGCACAGG
GAGGAGCCCCGCCCGCTCTAGAAGCTATTTCGCCAGACGAGATCGAGGTC
ACGCCACCGGTCGCTGCTCCCAAGAAACGTCTGAAGGCTCGCAAGCTGAC
GGCCGCCGCGGCGGCGGCCGCTCAGGCCACTGCGACTGGGGAGGCAGTAA
GAGCTGAAAGCTTGCCGGCGGCGGCGGCGGCGACAACGGCTAGACGGCAA
GAAGATGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:533821..534930+

>mRNA_P-fluviatile_contig8.14332.1 ID=mRNA_P-fluviatile_contig8.14332.1|Name=mRNA_P-fluviatile_contig8.14332.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=726bp|location=Sequence derived from alignment at P-fluviatile_contig8:533821..534930+ (Porterinema fluviatile SAG_2381)
CGGAAGGAAGAAGGGGTGCCCGGGAGGCCGAGGGAGTCCGGAATCCGCGT
GCGGGGGCGGCGACAGGCCGTCTGCGATGGAAAATGTGCAGCGGAAGGAA
GAAGGGGTGCCCGGGAGGCCGAGGGAGTCCGGAATCCGCGTGCGGGGGCG
GCGACAGGCCGTCTGCGATGGAAAATGTGCAGAATGTTCGACCTGTGTGT
CTCGTTTCCGTGCAGAAGGAGCAAATGAAGGAGCAGGAGCACAGGGAGGA
GCCCCGCCCGCTCTAGAAGCTATTTCGCCAGACGAGATCGAGGTCACGCC
ACCGGTCGCTGCTCCCAAGAAACGTCTGAAGGCTCGCAAGCTGACGGCCG
CCGCGGCGGCGGCCGCTCAGGCCACTGCGACTGGGGAGGCAGTAAGAGCT
GAAAGCTTGCCGGCGGCGGCGGCGGCGACAACGGCTAGACGGCAAGAAGA
TGGAAATGTTCGACCTGTGTGTCTCGTTTCCGTGCAGAAGGAGCAAATGA
AGGAGCAGGAGCACAGGGAGGAGCCCCGCCCGCTCTAGAAGCTATTTCGC
CAGACGAGATCGAGGTCACGCCACCGGTCGCTGCTCCCAAGAAACGTCTG
AAGGCTCGCAAGCTGACGGCCGCCGCGGCGGCGGCCGCTCAGGCCACTGC
GACTGGGGAGGCAGTAAGAGCTGAAAGCTTGCCGGCGGCGGCGGCGGCGA
CAACGGCTAGACGGCAAGAAGATGGA
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