mRNA_P-fluviatile_contig8.14331.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14331.1
Unique NamemRNA_P-fluviatile_contig8.14331.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14331.1 vs. uniprot
Match: D7G7X1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X1_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.140e-5
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 EKPCFTNGAAAKGLTNWAAGVCGRGQRLKYPGEGSTLNKIVASESGS 141
            EK  FT+GAAA   TNWAAGVCGRG+ L YPGEG   +K  A E+GS
Sbjct:  819 EKVYFTDGAAATKRTNWAAGVCGRGELLSYPGEGGEASK-KAVEAGS 864
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BLAST of mRNA_P-fluviatile_contig8.14331.1 vs. uniprot
Match: A0A6H5L777_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.710e-5
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 EKPCFTNGAAAKGLTNWAAGVCGRGQRLKYPGEGS-TLNKIV 123
            E   FT+GAAAK  TNWAAGVCGRG+ L YPGEG  T  K V
Sbjct:  956 EMVYFTDGAAAKKRTNWAAGVCGRGELLSYPGEGGETFKKAV 997
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7X1_ECTSI4.140e-563.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L777_9PHAE7.710e-566.67BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:532126..533212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1087
Cds size1086
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817217.666989-CDS-P-fluviatile_contig8:532125..5332111622817217.666989-CDS-P-fluviatile_contig8:532125..533211Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 532126..533211 +
1693571543.0916924-CDS-P-fluviatile_contig8:532125..5332111693571543.0916924-CDS-P-fluviatile_contig8:532125..533211Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 532126..533211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14331.1prot_P-fluviatile_contig8.14331.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 532126..533211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14331.1

>prot_P-fluviatile_contig8.14331.1 ID=prot_P-fluviatile_contig8.14331.1|Name=mRNA_P-fluviatile_contig8.14331.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=362bp
EKPCFTNGAAAKGLTNWAAGVCGRGQRLKYPGEGSTLNKIVASESGSGCA
ASSTDRGATKGGGAAVTGGTGSCGPLLTAACVGGETECASEGATPRALVA
SGETAGRREGGEKEKGSDGPPRRAGSSGALGPQKRAASSSTSAQQLTFTS
EEESGTAAVGGAADSLVADPSPVQMFATPPPPPVLSEDGNIRGGNVRGRR
GGAKTAVSLRSEVETGAIGAGTEEVPTGVELVAEIARKSGQALGEIPREE
SGNASSSLPPLTWPPPPPPPPPPPQPVVAGGVQTVNPADQARPPLVPSPD
ATQSQVVNATRGGIAQGVEATHRPPSIVDSMPPTRRPPAAAAAAAAAVGK
ENSRLRRQAEER
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mRNA from alignment at P-fluviatile_contig8:532126..533212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14331.1 ID=mRNA_P-fluviatile_contig8.14331.1|Name=mRNA_P-fluviatile_contig8.14331.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1087bp|location=Sequence derived from alignment at P-fluviatile_contig8:532126..533212+ (Porterinema fluviatile SAG_2381)
GAGAAACCATGTTTCACGAACGGTGCCGCCGCCAAAGGGCTGACCAATTG
GGCCGCAGGGGTGTGCGGCCGAGGGCAGCGCCTGAAGTACCCGGGAGAAG
GGAGCACCCTGAACAAGATTGTGGCATCGGAATCAGGATCGGGCTGCGCG
GCAAGCTCAACGGATCGTGGAGCAACGAAGGGGGGTGGGGCAGCCGTGAC
AGGAGGCACCGGAAGCTGCGGCCCACTATTAACAGCAGCGTGCGTAGGGG
GAGAGACGGAGTGTGCAAGCGAAGGCGCGACACCACGTGCGTTGGTGGCG
AGCGGGGAGACGGCCGGTCGGCGGGAAGGTGGCGAGAAGGAGAAGGGCAG
TGACGGGCCGCCTCGTCGCGCCGGCAGCAGCGGGGCGTTGGGGCCGCAGA
AGCGGGCGGCGTCGTCATCCACCAGCGCGCAGCAGCTGACTTTTACGAGC
GAGGAGGAGAGCGGCACCGCGGCGGTGGGCGGCGCCGCGGATTCCCTCGT
CGCCGATCCTAGCCCGGTGCAGATGTTTGCAACGCCGCCGCCGCCGCCTG
TATTGTCGGAAGACGGCAATATTCGTGGCGGCAACGTACGCGGCCGGAGG
GGCGGGGCCAAAACGGCGGTCTCTTTGCGCTCTGAGGTGGAGACGGGCGC
CATAGGCGCAGGAACTGAAGAGGTGCCAACAGGAGTTGAGTTGGTGGCCG
AGATTGCTAGGAAGAGCGGGCAAGCTCTCGGCGAGATACCGCGGGAAGAA
AGTGGAAATGCCTCGTCGTCATTGCCGCCGCTGACATGGCCGCCGCCGCC
GCCGCCGCCACCACCACCACCTCAACCGGTAGTAGCGGGGGGTGTACAGA
CTGTCAACCCCGCCGACCAAGCGCGGCCGCCGCTCGTCCCCTCGCCGGAC
GCGACGCAGTCCCAAGTAGTGAACGCAACCCGCGGTGGCATCGCTCAGGG
AGTAGAGGCGACACATCGTCCTCCATCAATCGTGGACAGCATGCCTCCCA
CAAGACGACCGCCGGCAGCAGCAGCGGCAGCAGCAGCAGCCGTTGGTAAA
GAAAATTCTCGGCTGCGGCGACAAGCTGAAGAACGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:532126..533212+

>mRNA_P-fluviatile_contig8.14331.1 ID=mRNA_P-fluviatile_contig8.14331.1|Name=mRNA_P-fluviatile_contig8.14331.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2172bp|location=Sequence derived from alignment at P-fluviatile_contig8:532126..533212+ (Porterinema fluviatile SAG_2381)
GAGAAACCATGTTTCACGAACGGTGCCGCCGCCAAAGGGCTGACCAATTG
GGCCGCAGGGGTGTGCGGCCGAGGGCAGCGCCTGAAGTACCCGGGAGAAG
GGAGCACCCTGAACAAGATTGTGGCATCGGAATCAGGATCGGGCTGCGCG
GCAAGCTCAACGGATCGTGGAGCAACGAAGGGGGGTGGGGCAGCCGTGAC
AGGAGGCACCGGAAGCTGCGGCCCACTATTAACAGCAGCGTGCGTAGGGG
GAGAGACGGAGTGTGCAAGCGAAGGCGCGACACCACGTGCGTTGGTGGCG
AGCGGGGAGACGGCCGGTCGGCGGGAAGGTGGCGAGAAGGAGAAGGGCAG
TGACGGGCCGCCTCGTCGCGCCGGCAGCAGCGGGGCGTTGGGGCCGCAGA
AGCGGGCGGCGTCGTCATCCACCAGCGCGCAGCAGCTGACTTTTACGAGC
GAGGAGGAGAGCGGCACCGCGGCGGTGGGCGGCGCCGCGGATTCCCTCGT
CGCCGATCCTAGCCCGGTGCAGATGTTTGCAACGCCGCCGCCGCCGCCTG
TATTGTCGGAAGACGGCAATATTCGTGGCGGCAACGTACGCGGCCGGAGG
GGCGGGGCCAAAACGGCGGTCTCTTTGCGCTCTGAGGTGGAGACGGGCGC
CATAGGCGCAGGAACTGAAGAGGTGCCAACAGGAGTTGAGTTGGTGGCCG
AGATTGCTAGGAAGAGCGGGCAAGCTCTCGGCGAGATACCGCGGGAAGAA
AGTGGAAATGCCTCGTCGTCATTGCCGCCGCTGACATGGCCGCCGCCGCC
GCCGCCGCCACCACCACCACCTCAACCGGTAGTAGCGGGGGGTGTACAGA
CTGTCAACCCCGCCGACCAAGCGCGGCCGCCGCTCGTCCCCTCGCCGGAC
GCGACGCAGTCCCAAGTAGTGAACGCAACCCGCGGTGGCATCGCTCAGGG
AGTAGAGGCGACACATCGTCCTCCATCAATCGTGGACAGCATGCCTCCCA
CAAGACGACCGCCGGCAGCAGCAGCGGCAGCAGCAGCAGCCGTTGGTAAA
GAAAATTCTCGGCTGCGGCGACAAGCTGAAGAACGAGAGAAACCATGTTT
CACGAACGGTGCCGCCGCCAAAGGGCTGACCAATTGGGCCGCAGGGGTGT
GCGGCCGAGGGCAGCGCCTGAAGTACCCGGGAGAAGGGAGCACCCTGAAC
AAGATTGTGGCATCGGAATCAGGATCGGGCTGCGCGGCAAGCTCAACGGA
TCGTGGAGCAACGAAGGGGGGTGGGGCAGCCGTGACAGGAGGCACCGGAA
GCTGCGGCCCACTATTAACAGCAGCGTGCGTAGGGGGAGAGACGGAGTGT
GCAAGCGAAGGCGCGACACCACGTGCGTTGGTGGCGAGCGGGGAGACGGC
CGGTCGGCGGGAAGGTGGCGAGAAGGAGAAGGGCAGTGACGGGCCGCCTC
GTCGCGCCGGCAGCAGCGGGGCGTTGGGGCCGCAGAAGCGGGCGGCGTCG
TCATCCACCAGCGCGCAGCAGCTGACTTTTACGAGCGAGGAGGAGAGCGG
CACCGCGGCGGTGGGCGGCGCCGCGGATTCCCTCGTCGCCGATCCTAGCC
CGGTGCAGATGTTTGCAACGCCGCCGCCGCCGCCTGTATTGTCGGAAGAC
GGCAATATTCGTGGCGGCAACGTACGCGGCCGGAGGGGCGGGGCCAAAAC
GGCGGTCTCTTTGCGCTCTGAGGTGGAGACGGGCGCCATAGGCGCAGGAA
CTGAAGAGGTGCCAACAGGAGTTGAGTTGGTGGCCGAGATTGCTAGGAAG
AGCGGGCAAGCTCTCGGCGAGATACCGCGGGAAGAAAGTGGAAATGCCTC
GTCGTCATTGCCGCCGCTGACATGGCCGCCGCCGCCGCCGCCGCCACCAC
CACCACCTCAACCGGTAGTAGCGGGGGGTGTACAGACTGTCAACCCCGCC
GACCAAGCGCGGCCGCCGCTCGTCCCCTCGCCGGACGCGACGCAGTCCCA
AGTAGTGAACGCAACCCGCGGTGGCATCGCTCAGGGAGTAGAGGCGACAC
ATCGTCCTCCATCAATCGTGGACAGCATGCCTCCCACAAGACGACCGCCG
GCAGCAGCAGCGGCAGCAGCAGCAGCCGTTGGTAAAGAAAATTCTCGGCT
GCGGCGACAAGCTGAAGAACGA
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