mRNA_P-fluviatile_contig8.14330.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14330.1
Unique NamemRNA_P-fluviatile_contig8.14330.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14330.1 vs. uniprot
Match: D7G7X1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X1_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.420e-15
Identity = 86/192 (44.79%), Postives = 102/192 (53.12%), Query Frame = 1 
Query:  244 TAAAIEGRGREGGSRCEDSSPAVSVGSSLHLELSLTPESQTLHPQCDRIATNCQARKDASVESSGRDSIESSCVSSLCLNLQSSVPLSSSSSKASATIFVSPALRGRVDQNAAG-----------GGNSAGVTRGSWTGNRRGSDSSIGHNSVAESHSPWSIRMLSSAEMSPTSPRNTPSSSLAAIAGHPPE 786
            T   ++G GRE        SPAVS  SS +L+LSLTPE       C R A    A K    + S RDS +S C+SSLCL+L SSVPLSSS+ + SA   +SP   G + Q AA            G + A    G   G   GS SS G NSVAES SPWS+R LSS E+SP SP      S AA A  PP+
Sbjct:  368 TGGGVDGNGRE-------DSPAVSTVSSYNLDLSLTPE-------CRRAAA-AGATKRPPAQPSVRDSTDS-CLSSLCLDLPSSVPLSSSN-RGSAAHTMSPPSGGLMGQTAAXXXXXXXXPRPRGDSGAQSRSGGTRGGNIGSCSSHGRNSVAESDSPWSLRALSSEELSPVSPCQGRRCSPAAAASVPPD 542
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BLAST of mRNA_P-fluviatile_contig8.14330.1 vs. uniprot
Match: A0A6H5L777_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.630e-9
Identity = 75/191 (39.27%), Postives = 95/191 (49.74%), Query Frame = 1 
Query:  256 IEGRGREGGSRCEDSSPAVSVGSSLHLELSLTPESQTLHPQCDRIATNCQARKDASVESSGRDSIESSCVSSLCLNLQSSVPLSSSSSKASATIFVSPALRGRVD-----------QNAAGGGNSAGVTRGSWTGNRRGSDSSIGHNSVAESHSPWSIRMLSSAEMSPTSP----RNTPSSSLAAIAGHPP 783
            ++G GRE        SPAVS  SS +L+LSLTPE       C R A    A K    + S RDS +S C+SSLCL+L SSVP SSS                              +  +G  + +G TRG       GS SS G NSVAES SPWS+R LSS E+SP SP    R +P+++  ++   PP
Sbjct:  510 VDGNGRE-------DSPAVSTVSSFNLDLSLTPE-------CGRTAA-AGATKPPPAQPSVRDSTDS-CLSSLCLDLPSSVPPSSSKXXXXXXXXXXXXXXXXXXXXXXXXXXPQPREDSGAQSRSGGTRGG----NIGSCSSHGRNSVAESDSPWSLRALSSEELSPVSPYQGGRCSPAAAPTSVPPGPP 680
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7X1_ECTSI2.420e-1544.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L777_9PHAE4.630e-939.27BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:529722..532071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1739
Cds size1737
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817214.8385398-CDS-P-fluviatile_contig8:529721..5300781622817214.8385398-CDS-P-fluviatile_contig8:529721..530078Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 529722..530078 +
1693571532.7887504-CDS-P-fluviatile_contig8:529721..5300781693571532.7887504-CDS-P-fluviatile_contig8:529721..530078Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 529722..530078 +
1622817214.8490987-CDS-P-fluviatile_contig8:530691..5320711622817214.8490987-CDS-P-fluviatile_contig8:530691..532071Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 530692..532071 +
1693571532.799943-CDS-P-fluviatile_contig8:530691..5320711693571532.799943-CDS-P-fluviatile_contig8:530691..532071Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 530692..532071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14330.1prot_P-fluviatile_contig8.14330.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 529722..532071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14330.1

>prot_P-fluviatile_contig8.14330.1 ID=prot_P-fluviatile_contig8.14330.1|Name=mRNA_P-fluviatile_contig8.14330.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=579bp
MRGHEQPGAGTPPTIDPPTAATAAATGEGETSAAPTVSVPSVATAAVVQE
AVMMAAAPRATSESVPAGSRAGAADVESVGTTAAAIEGRGREGGSRCEDS
SPAVSVGSSLHLELSLTPESQTLHPQCDRIATNCQARKDASVESSGRDSI
ESSCVSSLCLNLQSSVPLSSSSSKASATIFVSPALRGRVDQNAAGGGNSA
GVTRGSWTGNRRGSDSSIGHNSVAESHSPWSIRMLSSAEMSPTSPRNTPS
SSLAAIAGHPPEDRIGRLPVTPGPPPGESPSGGGGATSSAATPRNGGDAE
PASSSPRTGGMASSIADGRDVACRKSAGGGRGGGAQPTRNDGRCDPAALR
KQSAAPAQTVAGGGEGGARTTTQEGSRGTGVQRGEQGLAPQQEFLEAESP
PELPLQKSDVDYGEEETEERSCAAAAASAAVDTRSLAGGSSCDAEEADEP
PLDPGQDGVFPRGSAVSRRRSGCDGGRKSSSCGPLNPRLECAEGAKHAGS
DGALPIPESGGGSSGDAGGAGNSLEIGKGAAGPIFPRPRASGTTTSSSAA
AAAVVPDVLTVATPKRKAYTGGGGGSGND
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mRNA from alignment at P-fluviatile_contig8:529722..532071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14330.1 ID=mRNA_P-fluviatile_contig8.14330.1|Name=mRNA_P-fluviatile_contig8.14330.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2350bp|location=Sequence derived from alignment at P-fluviatile_contig8:529722..532071+ (Porterinema fluviatile SAG_2381)
ATGCGGGGGCACGAGCAACCAGGAGCTGGGACGCCCCCCACGATCGACCC
GCCAACCGCTGCCACCGCTGCTGCTACAGGCGAGGGCGAGACCAGTGCTG
CTCCAACGGTTTCCGTTCCGTCAGTGGCAACGGCAGCGGTGGTGCAGGAA
GCGGTGATGATGGCCGCAGCTCCTCGGGCGACGAGTGAAAGCGTTCCTGC
TGGCAGTAGGGCGGGCGCCGCTGATGTGGAAAGTGTGGGCACCACCGCGG
CGGCGATAGAGGGCAGGGGGCGGGAGGGCGGTAGCCGTTGCGAGGACAGC
AGCCCGGCCGTCTCCGTGGGATCCTCGCTGCACCTAGAGTTGTCCTTGAC
GCCTGAGGTGAGAACCCGCCTTGGCAGGGGCTTGTGCCTTAGCTCCCGCG
ACAGAAGTACCACCTTCGTGTTTTGTTTGCCGCTGGTATGTTTCAAGTAG
TTCGTGTATGGGTCAAAGGCTACAAGGCCGTTGTCTCGATCTGTTGCCGC
TCATATACAGATCGGCTTAGGTCCATTTGGCTATGCGTCGTCGTCCAGCG
ACGAGTTTGAGGCCGGGAGAAACATGTTTAGTCTCACCTTACGAATGAAT
GGCAGCGGCAGTTCTGAAAATCCTAGATATGTTCTCCTTGTTTTCTCGCC
ATTTGAGCTCGACGTAATGTTTATCGTTGGCCTCCTGCAGTTGCAGGGGA
ACTGAACGCGATAGCCGATATCGGGCACGTGCGCGAAGTTTAGCGCGTTT
TGGAGCGCGCGAATCTATTTGCCGAAGCTCGAATCTCGGCGGACGACTGG
TTGTCGCCCTCCCTGCCCCAAAGTCTCCGAGAACCCCAGGACTCCTAGCT
CGTCATTCGTCCCTACCTGAAGCCGAAAATCGAAACGGTCCTTTCCGGCG
TTTACGACTCATTTTCGCTTGTTTCTTTGTTCATGAACCATCCGTGCCGT
TTCCCTCCTTTCCGGAATAGTCGCAAACACTACATCCGCAGTGCGACAGA
ATAGCAACGAACTGCCAGGCGCGCAAAGACGCTTCTGTCGAGTCTTCAGG
TCGAGACAGCATCGAGTCGTCCTGCGTGTCCAGCCTTTGCCTGAATCTCC
AGTCATCTGTCCCACTCAGCAGCAGCAGCAGCAAGGCGTCGGCGACGATT
TTCGTGTCGCCAGCGCTCAGGGGTAGGGTGGATCAAAACGCCGCCGGTGG
GGGGAATAGCGCCGGGGTCACCAGGGGTAGTTGGACCGGCAATCGTAGGG
GCAGTGACAGCAGCATCGGTCACAACAGTGTTGCAGAGAGCCACAGCCCC
TGGTCCATCAGAATGTTGTCGTCGGCGGAGATGTCTCCCACAAGCCCGCG
GAACACGCCCAGCTCCTCTCTCGCCGCCATCGCCGGTCATCCACCGGAGG
ACCGCATCGGCCGCCTACCTGTCACCCCTGGACCACCTCCCGGAGAGTCG
CCGTCCGGCGGTGGTGGCGCAACGTCAAGCGCCGCGACCCCGCGGAACGG
AGGCGATGCAGAGCCCGCGTCGTCGTCCCCTAGGACTGGAGGCATGGCGA
GCTCGATCGCCGATGGCAGGGACGTTGCTTGCAGGAAATCAGCCGGCGGG
GGTCGGGGTGGGGGCGCTCAGCCCACGCGGAACGATGGAAGGTGTGATCC
CGCGGCCCTGAGGAAGCAGTCGGCAGCACCGGCACAGACCGTCGCTGGTG
GCGGGGAGGGGGGCGCGCGGACGACGACGCAGGAAGGCTCGAGGGGCACA
GGGGTCCAAAGAGGAGAACAAGGCCTCGCGCCACAGCAAGAGTTCCTCGA
AGCGGAATCGCCGCCCGAGCTGCCGTTGCAAAAGAGCGATGTTGATTACG
GGGAAGAGGAGACGGAAGAAAGATCGTGCGCTGCCGCCGCCGCTTCCGCC
GCCGTGGACACCAGATCACTCGCGGGCGGGTCGTCCTGCGACGCTGAAGA
AGCCGATGAGCCCCCCCTAGACCCGGGCCAAGACGGAGTTTTTCCCAGGG
GAAGTGCTGTGTCCCGGCGCCGTAGCGGATGCGATGGTGGACGGAAATCT
TCCAGCTGCGGTCCTCTGAACCCCAGATTGGAATGTGCGGAGGGCGCGAA
ACACGCTGGAAGCGACGGGGCTCTCCCCATTCCCGAGTCTGGCGGTGGTA
GTAGCGGCGATGCTGGTGGTGCGGGGAACAGTTTGGAGATAGGAAAGGGG
GCAGCGGGGCCGATATTTCCGCGGCCGAGGGCTTCGGGTACGACCACATC
ATCATCAGCGGCTGCTGCTGCTGTTGTTCCTGACGTACTGACCGTCGCTA
CGCCGAAACGGAAAGCTTACACCGGCGGCGGCGGCGGCAGTGGCAACGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:529722..532071+

>mRNA_P-fluviatile_contig8.14330.1 ID=mRNA_P-fluviatile_contig8.14330.1|Name=mRNA_P-fluviatile_contig8.14330.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3474bp|location=Sequence derived from alignment at P-fluviatile_contig8:529722..532071+ (Porterinema fluviatile SAG_2381)
ATGCGGGGGCACGAGCAACCAGGAGCTGGGACGCCCCCCACGATCGACCC
GCCAACCGCTGCCACCGCTGCTGCTACAGGCGAGGGCGAGACCAGTGCTG
CTCCAACGGTTTCCGTTCCGTCAGTGGCAACGGCAGCGGTGGTGCAGGAA
GCGGTGATGATGGCCGCAGCTCCTCGGGCGACGAGTGAAAGCGTTCCTGC
TGGCAGTAGGGCGGGCGCCGCTGATGTGGAAAGTGTGGGCACCACCGCGG
CGGCGATAGAGGGCAGGGGGCGGGAGGGCGGTAGCCGTTGCGAGGACAGC
AGCCCGGCCGTCTCCGTGGGATCCTCGCTGCACCTAGAGTTGTCCTTGAC
GCCTGAGATGCGGGGGCACGAGCAACCAGGAGCTGGGACGCCCCCCACGA
TCGACCCGCCAACCGCTGCCACCGCTGCTGCTACAGGCGAGGGCGAGACC
AGTGCTGCTCCAACGGTTTCCGTTCCGTCAGTGGCAACGGCAGCGGTGGT
GCAGGAAGCGGTGATGATGGCCGCAGCTCCTCGGGCGACGAGTGAAAGCG
TTCCTGCTGGCAGTAGGGCGGGCGCCGCTGATGTGGAAAGTGTGGGCACC
ACCGCGGCGGCGATAGAGGGCAGGGGGCGGGAGGGCGGTAGCCGTTGCGA
GGACAGCAGCCCGGCCGTCTCCGTGGGATCCTCGCTGCACCTAGAGTTGT
CCTTGACGCCTGAGTCGCAAACACTACATCCGCAGTGCGACAGAATAGCA
ACGAACTGCCAGGCGCGCAAAGACGCTTCTGTCGAGTCTTCAGGTCGAGA
CAGCATCGAGTCGTCCTGCGTGTCCAGCCTTTGCCTGAATCTCCAGTCAT
CTGTCCCACTCAGCAGCAGCAGCAGCAAGGCGTCGGCGACGATTTTCGTG
TCGCCAGCGCTCAGGGGTAGGGTGGATCAAAACGCCGCCGGTGGGGGGAA
TAGCGCCGGGGTCACCAGGGGTAGTTGGACCGGCAATCGTAGGGGCAGTG
ACAGCAGCATCGGTCACAACAGTGTTGCAGAGAGCCACAGCCCCTGGTCC
ATCAGAATGTTGTCGTCGGCGGAGATGTCTCCCACAAGCCCGCGGAACAC
GCCCAGCTCCTCTCTCGCCGCCATCGCCGGTCATCCACCGGAGGACCGCA
TCGGCCGCCTACCTGTCACCCCTGGACCACCTCCCGGAGAGTCGCCGTCC
GGCGGTGGTGGCGCAACGTCAAGCGCCGCGACCCCGCGGAACGGAGGCGA
TGCAGAGCCCGCGTCGTCGTCCCCTAGGACTGGAGGCATGGCGAGCTCGA
TCGCCGATGGCAGGGACGTTGCTTGCAGGAAATCAGCCGGCGGGGGTCGG
GGTGGGGGCGCTCAGCCCACGCGGAACGATGGAAGGTGTGATCCCGCGGC
CCTGAGGAAGCAGTCGGCAGCACCGGCACAGACCGTCGCTGGTGGCGGGG
AGGGGGGCGCGCGGACGACGACGCAGGAAGGCTCGAGGGGCACAGGGGTC
CAAAGAGGAGAACAAGGCCTCGCGCCACAGCAAGAGTTCCTCGAAGCGGA
ATCGCCGCCCGAGCTGCCGTTGCAAAAGAGCGATGTTGATTACGGGGAAG
AGGAGACGGAAGAAAGATCGTGCGCTGCCGCCGCCGCTTCCGCCGCCGTG
GACACCAGATCACTCGCGGGCGGGTCGTCCTGCGACGCTGAAGAAGCCGA
TGAGCCCCCCCTAGACCCGGGCCAAGACGGAGTTTTTCCCAGGGGAAGTG
CTGTGTCCCGGCGCCGTAGCGGATGCGATGGTGGACGGAAATCTTCCAGC
TGCGGTCCTCTGAACCCCAGATTGGAATGTGCGGAGGGCGCGAAACACGC
TGGAAGCGACGGGGCTCTCCCCATTCCCGAGTCTGGCGGTGGTAGTAGCG
GCGATGCTGGTGGTGCGGGGAACAGTTTGGAGATAGGAAAGGGGGCAGCG
GGGCCGATATTTCCGCGGCCGAGGGCTTCGGGTACGACCACATCATCATC
AGCGGCTGCTGCTGCTGTTGTTCCTGACGTACTGACCGTCGCTACGCCGA
AACGGAAAGCTTACACCGGCGGCGGCGGCGGCAGTGGCAACGACTCGCAA
ACACTACATCCGCAGTGCGACAGAATAGCAACGAACTGCCAGGCGCGCAA
AGACGCTTCTGTCGAGTCTTCAGGTCGAGACAGCATCGAGTCGTCCTGCG
TGTCCAGCCTTTGCCTGAATCTCCAGTCATCTGTCCCACTCAGCAGCAGC
AGCAGCAAGGCGTCGGCGACGATTTTCGTGTCGCCAGCGCTCAGGGGTAG
GGTGGATCAAAACGCCGCCGGTGGGGGGAATAGCGCCGGGGTCACCAGGG
GTAGTTGGACCGGCAATCGTAGGGGCAGTGACAGCAGCATCGGTCACAAC
AGTGTTGCAGAGAGCCACAGCCCCTGGTCCATCAGAATGTTGTCGTCGGC
GGAGATGTCTCCCACAAGCCCGCGGAACACGCCCAGCTCCTCTCTCGCCG
CCATCGCCGGTCATCCACCGGAGGACCGCATCGGCCGCCTACCTGTCACC
CCTGGACCACCTCCCGGAGAGTCGCCGTCCGGCGGTGGTGGCGCAACGTC
AAGCGCCGCGACCCCGCGGAACGGAGGCGATGCAGAGCCCGCGTCGTCGT
CCCCTAGGACTGGAGGCATGGCGAGCTCGATCGCCGATGGCAGGGACGTT
GCTTGCAGGAAATCAGCCGGCGGGGGTCGGGGTGGGGGCGCTCAGCCCAC
GCGGAACGATGGAAGGTGTGATCCCGCGGCCCTGAGGAAGCAGTCGGCAG
CACCGGCACAGACCGTCGCTGGTGGCGGGGAGGGGGGCGCGCGGACGACG
ACGCAGGAAGGCTCGAGGGGCACAGGGGTCCAAAGAGGAGAACAAGGCCT
CGCGCCACAGCAAGAGTTCCTCGAAGCGGAATCGCCGCCCGAGCTGCCGT
TGCAAAAGAGCGATGTTGATTACGGGGAAGAGGAGACGGAAGAAAGATCG
TGCGCTGCCGCCGCCGCTTCCGCCGCCGTGGACACCAGATCACTCGCGGG
CGGGTCGTCCTGCGACGCTGAAGAAGCCGATGAGCCCCCCCTAGACCCGG
GCCAAGACGGAGTTTTTCCCAGGGGAAGTGCTGTGTCCCGGCGCCGTAGC
GGATGCGATGGTGGACGGAAATCTTCCAGCTGCGGTCCTCTGAACCCCAG
ATTGGAATGTGCGGAGGGCGCGAAACACGCTGGAAGCGACGGGGCTCTCC
CCATTCCCGAGTCTGGCGGTGGTAGTAGCGGCGATGCTGGTGGTGCGGGG
AACAGTTTGGAGATAGGAAAGGGGGCAGCGGGGCCGATATTTCCGCGGCC
GAGGGCTTCGGGTACGACCACATCATCATCAGCGGCTGCTGCTGCTGTTG
TTCCTGACGTACTGACCGTCGCTACGCCGAAACGGAAAGCTTACACCGGC
GGCGGCGGCGGCAGTGGCAACGAC
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