mRNA_P-fluviatile_contig8.14327.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14327.1
Unique NamemRNA_P-fluviatile_contig8.14327.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14327.1 vs. uniprot
Match: D7FTN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 2.270e-51
Identity = 93/154 (60.39%), Postives = 108/154 (70.13%), Query Frame = 1 
Query:  190 SYELFENERELRRFAVLPPEDRVLAAAAAGRAWCVEELFAQGCPMESNRGTGLTALHVAAMRNDPDTVRVLLNMKVDVNATNVSGATPLSCAIGGAGGIDGASASLLRAAGGLVCVEESMIAPGSIIDVPIRRPRRAIDDQAEEMGRMVYTGQF 651
            SYELFENERELRR AVLPPEDRVLAAAAAGRAWCVEELFAQGCP+E                                   ++SGATPLSCA+GGAGG DG  A+LLRA+GGLV + +  I+ GSI+DV +RRPRRA+DD+A+ +GRMVYTGQF
Sbjct:    2 SYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIEGK---------------------------------HMSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVKDTISSGSILDVSLRRPRRAMDDRADALGRMVYTGQF 122
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BLAST of mRNA_P-fluviatile_contig8.14327.1 vs. uniprot
Match: A0A7S2XV99_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV99_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.450e-31
Identity = 75/198 (37.88%), Postives = 112/198 (56.57%), Query Frame = 1 
Query:   70 VQRIVARDGCLT--QYDNDLKLTRDPLLYLKWTPIHPHPLPTSYELFENERELRRFAVLPPEDRVLAAAAAGRAWCVEELFAQGCPMESNRGTGLTALHVAAMRNDPDTVRVLLNMKVDVNATNVSGATPLSCAIGGAGGIDGASASLLRAAGGLV-CVEESMIAPGSIIDVPIRRP-RRAIDDQAEEMGRMVYTGQF 651
            + R +ARD  +   + D +++  RD +L +KW P+  HPLP S E F N+R +RR   L P  R L AAA GRAWC+EE + +GCP+E   G G   LH+AA     + VRVLLN+ VD N + ++G  PL+ A+          A+L+R AGG++   +   +    I+DV IR+P  R ID + + + +  Y  + 
Sbjct:   14 LHRAIARDESIIFQKEDAEIEKNRDHMLLVKWRPLLRHPLPVSEEKFANDRLMRRLNGLHPSKRALLAAAEGRAWCIEECYIKGCPIEVTNGEGYKPLHLAASLGHVEAVRVLLNIGVDPNDSTMTGFLPLALAVASN---HTQCATLIREAGGVMQAPDPDQVQLLRILDVDIRQPPSRVIDLRCDVLKKPRYPWEL 208
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BLAST of mRNA_P-fluviatile_contig8.14327.1 vs. uniprot
Match: A0A835ZJ91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ91_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.980e-15
Identity = 52/115 (45.22%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:  316 CPMESNRGTGLTALHVAAMRNDPDTVRVLLNMKVDVNATNVSGATPLSCAIGGAGGIDGASASLLRAAGGLVCVE-ESMIAPGSIID-VPIRRPRRAIDDQAEEMGRMV-YTGQF 651
            CP+      GLT LH AA   D  TVR LLNM VD N T + G TPL  A+   GG D A A+LLR AGG++    ++  A   + + +    PRRA+DD A E+GR V Y GQ+
Sbjct:   14 CPVAERCDIGLTPLHAAAAYGDAATVRALLNMGVDANPTTMGGVTPLQSAVA-TGGADCACAALLRKAGGVMATAADTRPARYDLFEGLAPPPPRRAMDDNARELGRRVPYYGQY 127
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BLAST of mRNA_P-fluviatile_contig8.14327.1 vs. uniprot
Match: A0A482RTF8_9ARCH (Ankyrin repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTF8_9ARCH)

HSP 1 Score: 75.1 bits (183), Expect = 4.760e-13
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:  157 WTPIHPHPLPTSYELFENERELRRFAVLPPEDRVLAAAAAGRAWCVEELFAQGCPMESNRGTGLTALHVAAMRNDPDTVRVLLNMKVDVNATNVSGATPL 456
            +TP+  HPLP S   +E+E  LRR     P  + +AA + G AW +EE++ +G P+  +   G   +H+A      D V VL+NMKV++NA N  G TPL
Sbjct:   33 YTPLLKHPLPMSDRRYEHENVLRRVLSCKPSFQGMAAISQGDAWTLEEVYMRGGPIVLSPKNGNHPIHLAVQVQSVDCVMVLINMKVNLNAVNSLGYTPL 132
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTN3_ECTSI2.270e-5160.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XV99_9STRA1.450e-3137.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZJ91_9STRA7.980e-1545.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482RTF8_9ARCH4.760e-1340.00Ankyrin repeat domain-containing protein n=1 Tax=a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:503301..505886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_001750.1
Exons5
Model size654
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14327.1prot_P-fluviatile_contig8.14327.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 503301..505886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817222.9653745-CDS-P-fluviatile_contig8:503300..5035191622817222.9653745-CDS-P-fluviatile_contig8:503300..503519Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 503301..503519 -
1693571569.0587063-CDS-P-fluviatile_contig8:503300..5035191693571569.0587063-CDS-P-fluviatile_contig8:503300..503519Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 503301..503519 -
1622817222.9764225-CDS-P-fluviatile_contig8:503911..5040101622817222.9764225-CDS-P-fluviatile_contig8:503911..504010Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 503912..504010 -
1693571569.0674968-CDS-P-fluviatile_contig8:503911..5040101693571569.0674968-CDS-P-fluviatile_contig8:503911..504010Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 503912..504010 -
1622817222.9876335-CDS-P-fluviatile_contig8:504752..5048901622817222.9876335-CDS-P-fluviatile_contig8:504752..504890Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 504753..504890 -
1693571569.076561-CDS-P-fluviatile_contig8:504752..5048901693571569.076561-CDS-P-fluviatile_contig8:504752..504890Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 504753..504890 -
1622817223.0003552-CDS-P-fluviatile_contig8:505121..5052561622817223.0003552-CDS-P-fluviatile_contig8:505121..505256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 505122..505256 -
1693571569.4537446-CDS-P-fluviatile_contig8:505121..5052561693571569.4537446-CDS-P-fluviatile_contig8:505121..505256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 505122..505256 -
1622817223.0133111-CDS-P-fluviatile_contig8:505823..5058861622817223.0133111-CDS-P-fluviatile_contig8:505823..505886Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 505824..505886 -
1693571569.4669487-CDS-P-fluviatile_contig8:505823..5058861693571569.4669487-CDS-P-fluviatile_contig8:505823..505886Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 505824..505886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14327.1

>prot_P-fluviatile_contig8.14327.1 ID=prot_P-fluviatile_contig8.14327.1|Name=mRNA_P-fluviatile_contig8.14327.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=218bp
RRRETDAAREKALTLKKESSTVDVQRIVARDGCLTQYDNDLKLTRDPLLY
LKWTPIHPHPLPTSYELFENERELRRFAVLPPEDRVLAAAAAGRAWCVEE
LFAQGCPMESNRGTGLTALHVAAMRNDPDTVRVLLNMKVDVNATNVSGAT
PLSCAIGGAGGIDGASASLLRAAGGLVCVEESMIAPGSIIDVPIRRPRRA
IDDQAEEMGRMVYTGQF*
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mRNA from alignment at P-fluviatile_contig8:503301..505886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14327.1 ID=mRNA_P-fluviatile_contig8.14327.1|Name=mRNA_P-fluviatile_contig8.14327.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2586bp|location=Sequence derived from alignment at P-fluviatile_contig8:503301..505886- (Porterinema fluviatile SAG_2381)
CGGCGGCGCGAGACCGATGCGGCGAGAGAAAAAGCTTTGACGCTCAAGAA
AGAATCGTCAACGGTACGTCACAAATCGACCGGTTGCGCACTTTGACCCA
ATGGATACCGTGAGAACAGGTTGTACTCGAGGTTTTCACATCTCGTCTAG
TGTAAACAGCTTGCGTGCCTTCACTGTATTTCACGTGCAGTTTACACATG
AACTGGTTTCAATCGGTGCACATCAGATGAAGGCAAGGACGCATACCTCC
GAGGGAGGTGGAGACAACATGAAAGGGGGCGAGGGTTTATGATGCAGCCA
TCTTGCGCCGGTCAAGATTTTCGAATGGCGGGTCTCGTTGTCTTCCTGCG
ACATCAGCATTTTATCGGCACGGTTGCTGCGCCTTCGAAGAGCGCCTGAA
CGTTGATGAAGTGTGCGTAGGGTTCTAAAAAAACGAAGCCATCATCTCAT
CCATCACGGTATCCCTAGAAGAACCTAGTCAAGTATCGTGCATGATCCAC
TTGTAGTTCTTGTTGACTGTACATTGTTAACAAGAGAGGCACAAGACTAC
GGTAGCCATCTCCTTCACACGGCACTTCACACGGCATAGTCCCGGCTGAC
CTATGCTGCACGTCACCCCGATATCCTCAGGTTGATGTCCAACGAATAGT
GGCTCGAGATGGCTGCCTGACTCAGTATGACAACGACCTCAAGCTCACCA
GGGACCCCCTACTCTACCTCAAATGGACGCCAATCCACCCGCATCCACTC
CCCACGAGCTACGAGGTGGGCATCTTCACCCCACTGGTGGCAACAAGGGA
GACGTTTGCACCAAGCAATTTTTTCACGTGTTGATAGCATTTGAGGCATT
AGTCTTCCTCGTTGTCAGAACTAACGCATACCGATATCGATGCCGATAGG
CGCTTCGAGTGATTTCTTACAGCTATTATCTTGTGCAAAGTTGACCGCTT
GATTTCTATGTTTCTTCGCACGGGGGCACGCGTGTGCGGTGCGCAGCTGT
TCGAGAATGAGCGCGAGCTCCGAAGATTTGCGGTTTTACCCCCTGAAGAT
CGGGTTCTCGCCGCCGCTGCCGCCGGGCGCGCTTGGTGCGTCGAAGAGCT
TTTCGCCCAAGGGTGTCCGATGGAGTCCAATCGGGTATGTGCGTGGCTAC
GTATCATTCTTGCCCCCAAAGCTTGACCTCTTGACTGCGTGTACGCCGAT
TGAAATTGTGTTCATCTCTAGGTCGACAGGCAAAACTATTACCACAAGAC
TTTAGTGTGTGGAAGATTTTGTTGCCCAAGGCTTCATGATATAGGCCCAA
AGAGGATTTTGCGTGGCTGGGTGTTACCCTTGCTCCAAAGCTAGACCCTG
TTGGCTGCGTGTATGCGTACTGATCGTGTCATCTCTAGGCAGTCAAAAGG
CTACTACCTCAAGACAATGGTGCGTGGAAGATGTTTTTGCCCAAAGGTGC
CTGACTGAGGCCAAACGAGCATATTGCGTGGCTGCGTGTCATGATCACCT
GCATAGCTAGACCCTGTTGGCTGCATGTATCCGGCTGGAGAGTGTGAGTA
AAGGCATCATGTACCACGATATACTCCGGTCGAAGTCATCTTAGTCGTGC
GTGAAAGTGGTGAATTTTTCCTCTGTCTCTCAGCAGGGTCGCCACCGTCG
TCTCAATCACAGTTGTTGAAGTGAGTGAAAGCCGAATTGGTACCTGTTGC
AACGTCCTACGGTTTACGTACGGTGCGATTAGTCGCTTGCAGAACAGATT
TGAGCGTTAATCGGCTGGATTCCGCAACCAGGCAACCGAATCTCTCTAAG
CTTGTGTAATTTCCCATTCAACTCTACCCATCTACTTCACGATTTCTTTG
CACGTGTCTCGTATGCCGGTGTTCAGGGTACAGGGCTAACGGCTCTGCAC
GTTGCTGCCATGAGAAACGATCCTGACACGGTACGGGTTCTTTTGAACAT
GAAGGTGGACGTCAATGCTACCAACGTGAGTGAAAGTGACGTTCGTGGTG
CGACAAACCTATTGACATCGGTCACGCATTTTTTTGCCGCCGTGATACGA
CCGAAATCGCGTTCACAGTGCAAGGCGGTCAGCACTCTTAGGGCCCGAAA
CATGACAGGGCGTTATGACAGCCGAGCGGCACTGCTCAGAAAACGCATCC
CCTGTGCGACAATCGAATACTGCAGGCGGGCCGTCGTGGCTGTTTCTTCA
CATAAAACGACGACCGAAAAGGTTGGGTGCAAGCAGCAAATGCAGCGAAT
TCAGCACCCGAAGGAGCAAACTCGTATCGTATGCAACCCCTTCAGACTTG
AGCCGATAACCAACTACCGTAACCCCCCAACTGCTTTTTCTTGCCTCCTT
GTCTTCGTGTTTGATAGGTGAGCGGAGCCACTCCGCTGTCGTGCGCCATT
GGTGGCGCAGGAGGAATCGACGGGGCGTCCGCTTCCCTTTTGCGCGCAGC
GGGGGGGTTGGTTTGTGTGGAAGAGAGCATGATTGCCCCGGGGTCCATCA
TCGACGTGCCCATACGGCGGCCGCGCAGAGCAATCGACGACCAGGCGGAG
GAGATGGGGCGGATGGTGTACACAGGGCAGTTTTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:503301..505886-

>mRNA_P-fluviatile_contig8.14327.1 ID=mRNA_P-fluviatile_contig8.14327.1|Name=mRNA_P-fluviatile_contig8.14327.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1308bp|location=Sequence derived from alignment at P-fluviatile_contig8:503301..505886- (Porterinema fluviatile SAG_2381)
CGGCGGCGCGAGACCGATGCGGCGAGAGAAAAAGCTTTGACGCTCAAGAA
AGAATCGTCAACGCGGCGGCGCGAGACCGATGCGGCGAGAGAAAAAGCTT
TGACGCTCAAGAAAGAATCGTCAACGGTTGATGTCCAACGAATAGTGGCT
CGAGATGGCTGCCTGACTCAGTATGACAACGACCTCAAGCTCACCAGGGA
CCCCCTACTCTACCTCAAATGGACGCCAATCCACCCGCATCCACTCCCCA
CGAGCTACGAGGTTGATGTCCAACGAATAGTGGCTCGAGATGGCTGCCTG
ACTCAGTATGACAACGACCTCAAGCTCACCAGGGACCCCCTACTCTACCT
CAAATGGACGCCAATCCACCCGCATCCACTCCCCACGAGCTACGAGCTGT
TCGAGAATGAGCGCGAGCTCCGAAGATTTGCGGTTTTACCCCCTGAAGAT
CGGGTTCTCGCCGCCGCTGCCGCCGGGCGCGCTTGGTGCGTCGAAGAGCT
TTTCGCCCAAGGGTGTCCGATGGAGTCCAATCGGCTGTTCGAGAATGAGC
GCGAGCTCCGAAGATTTGCGGTTTTACCCCCTGAAGATCGGGTTCTCGCC
GCCGCTGCCGCCGGGCGCGCTTGGTGCGTCGAAGAGCTTTTCGCCCAAGG
GTGTCCGATGGAGTCCAATCGGGGTACAGGGCTAACGGCTCTGCACGTTG
CTGCCATGAGAAACGATCCTGACACGGTACGGGTTCTTTTGAACATGAAG
GTGGACGTCAATGCTACCAACGGTACAGGGCTAACGGCTCTGCACGTTGC
TGCCATGAGAAACGATCCTGACACGGTACGGGTTCTTTTGAACATGAAGG
TGGACGTCAATGCTACCAACGTGAGCGGAGCCACTCCGCTGTCGTGCGCC
ATTGGTGGCGCAGGAGGAATCGACGGGGCGTCCGCTTCCCTTTTGCGCGC
AGCGGGGGGGTTGGTTTGTGTGGAAGAGAGCATGATTGCCCCGGGGTCCA
TCATCGACGTGCCCATACGGCGGCCGCGCAGAGCAATCGACGACCAGGCG
GAGGAGATGGGGCGGATGGTGTACACAGGGCAGTTTTGAGTGAGCGGAGC
CACTCCGCTGTCGTGCGCCATTGGTGGCGCAGGAGGAATCGACGGGGCGT
CCGCTTCCCTTTTGCGCGCAGCGGGGGGGTTGGTTTGTGTGGAAGAGAGC
ATGATTGCCCCGGGGTCCATCATCGACGTGCCCATACGGCGGCCGCGCAG
AGCAATCGACGACCAGGCGGAGGAGATGGGGCGGATGGTGTACACAGGGC
AGTTTTGA
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