mRNA_P-fluviatile_contig8.14321.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14321.1
Unique NamemRNA_P-fluviatile_contig8.14321.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:407554..408823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size255
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14321.1prot_P-fluviatile_contig8.14321.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 407555..408823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817214.7835295-UTR-P-fluviatile_contig8:407553..4075541622817214.7835295-UTR-P-fluviatile_contig8:407553..407554Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 407554..407554 -
1693571532.5519142-UTR-P-fluviatile_contig8:407553..4075541693571532.5519142-UTR-P-fluviatile_contig8:407553..407554Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 407554..407554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817214.7955935-CDS-P-fluviatile_contig8:407554..4076561622817214.7955935-CDS-P-fluviatile_contig8:407554..407656Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 407555..407656 -
1693571532.7649143-CDS-P-fluviatile_contig8:407554..4076561693571532.7649143-CDS-P-fluviatile_contig8:407554..407656Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 407555..407656 -
1622817214.8066638-CDS-P-fluviatile_contig8:408670..4088231622817214.8066638-CDS-P-fluviatile_contig8:408670..408823Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 408671..408823 -
1693571532.7777507-CDS-P-fluviatile_contig8:408670..4088231693571532.7777507-CDS-P-fluviatile_contig8:408670..408823Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 408671..408823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14321.1

>prot_P-fluviatile_contig8.14321.1 ID=prot_P-fluviatile_contig8.14321.1|Name=mRNA_P-fluviatile_contig8.14321.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=85bp
VEHSTGTRARQNRGGDPPSHFKGFIDLGLSRGTVGSVDGLDDLAGGCAIS
KQHLRQGSSLQRERGENNESREHGERRQKVRVCV*
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mRNA from alignment at P-fluviatile_contig8:407554..408823-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14321.1 ID=mRNA_P-fluviatile_contig8.14321.1|Name=mRNA_P-fluviatile_contig8.14321.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1270bp|location=Sequence derived from alignment at P-fluviatile_contig8:407554..408823- (Porterinema fluviatile SAG_2381)
GTCGAGCATTCAACTGGAACGAGAGCGCGACAGAATAGAGGAGGTGATCC
ACCAAGCCATTTCAAGGGATTTATTGACCTCGGACTATCTAGAGGGACGG
TGGGCAGCGTAGACGGCCTTGACGACCTTGCTGGAGGCTGTGCGATATCA
AAGGTAAGCAGCGCCGCAGCAACGTTGCAGGCTAGTCTGCTCCGCGGCGC
GAACAAGACTCGTCACAGGGCAGCCCCATGCAACCTCTGCTGTAACTACT
GCCGCTGATCCTCCAAGTGCGAAGTCCGGACAAGAGAGGGAATACAGATA
TAGGGTGCGCTGCTCCACGATGTGGTAGATCTTTTTAGTCTTTGAAAGAA
AAATACCGAGCTTGCTCCATGTGCTCTCGGTAACAGATACCGCAGCATCG
ATCAGGCGCGTCGAGGACCTCAAATAGGAGACGGATGGCATGTGCAGCCT
ACACAGCAGTAGCGGTTATGAAGTACTTTCTTGTACATTGTCATTTTAGT
GAAGGGGCCGATGCATTCCTACTTTAAGTGGAAATCGCCGTCAGGCACAA
TACATTGCTCTCTCCCTCGCACGTGTGTTAGTTTACTAGTATTACACGCT
CGCTCTTCGCGCACCTTCACAGCACTCTTCCTCACAATGCAAACAACGCG
AGCAGCGAGACCGACACCGCTCGCAGTTGTGGACACCCATCCTGCAGATT
GCCATTGTCCACTGCCTTCTCCACTCTGGCCCCGACCCCTTTCCTCCGTG
GAAAACGCATGGATGTACTGTGTCGCCGACGCATGTAGCCGCGTGTTATC
CGAATCATGTTCTTTCGCACCGATTTGCTTGCTGACCGATAGTCTGTCTG
TGTCACGCAATAGATACGGAGAGAGAGAGGGAGAGAGACAGGAAAAGGTG
TGGTAGGCCTCGTTGCTTAATCCACACTTTTGCGCCACACGCCCTTCTTT
AAGCCGCTGAATTTGCTTACTATCCAGCGCTGCCGTCCAGATGGGTAAAA
TGTTCCCGGAGATGAGTTCGTTCATGTGTGCAACAACGTGACGTACGATC
GGGGCAGTCACGCGTGCCTCCTTCAATGGGAAGCTGTTCCCCTTACCGTC
GCTTGGTTGCGCTCTCCCTGGCGCGCCCTCCCCTCAAATTTGTTGATCGA
ATTGCTACCGCTCTCAGCAACATCTGCGGCAGGGATCCAGCTTGCAAAGG
GAAAGGGGCGAGAACAACGAGAGTAGAGAACACGGCGAGAGACGACAGAA
GGTGCGGGTGTGTGTGTGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:407554..408823-

>mRNA_P-fluviatile_contig8.14321.1 ID=mRNA_P-fluviatile_contig8.14321.1|Name=mRNA_P-fluviatile_contig8.14321.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=510bp|location=Sequence derived from alignment at P-fluviatile_contig8:407554..408823- (Porterinema fluviatile SAG_2381)
GTCGAGCATTCAACTGGAACGAGAGCGCGACAGAATAGAGGAGGTGATCC
ACCAAGCCATTTCAAGGGATTTATTGACCTCGGACTATCTAGAGGGACGG
TGGGCAGCGTAGACGGCCTTGACGACCTTGCTGGAGGCTGTGCGATATCA
AAGGTCGAGCATTCAACTGGAACGAGAGCGCGACAGAATAGAGGAGGTGA
TCCACCAAGCCATTTCAAGGGATTTATTGACCTCGGACTATCTAGAGGGA
CGGTGGGCAGCGTAGACGGCCTTGACGACCTTGCTGGAGGCTGTGCGATA
TCAAAGCAACATCTGCGGCAGGGATCCAGCTTGCAAAGGGAAAGGGGCGA
GAACAACGAGAGTAGAGAACACGGCGAGAGACGACAGAAGGTGCGGGTGT
GTGTGTGACAACATCTGCGGCAGGGATCCAGCTTGCAAAGGGAAAGGGGC
GAGAACAACGAGAGTAGAGAACACGGCGAGAGACGACAGAAGGTGCGGGT
GTGTGTGTGA
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