mRNA_P-fluviatile_contig8.14312.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14312.1
Unique NamemRNA_P-fluviatile_contig8.14312.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14312.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 81.3 bits (199), Expect = 4.910e-14
Identity = 43/88 (48.86%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:  451 CET-DDALDPAKPRARSRHAYRLRKETAWKERRAAMEAPALCQANNGDTNLAGKFHKTLPHDKFGRVDEDAFRALEDCIYSAEYGACE 711
            C T DDA DP  P  R   A+  R   A +E         +CQ NNG+T+LA KFHK+LPHD  G+VD DAF ALEDCI + +   CE
Sbjct:    3 CSTSDDADDPTPPNERDDEAFASRVAAAKRELEGT---GTVCQINNGETDLAAKFHKSLPHDDLGQVDADAFAALEDCILNGDLSICE 87
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BLAST of mRNA_P-fluviatile_contig8.14312.1 vs. uniprot
Match: A0A3G3BM34_SACJA (Vanadium-dependent bromine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM34_SACJA)

HSP 1 Score: 68.2 bits (165), Expect = 1.510e-9
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:  451 CETDDALDPAKPRARSRHAYRLRKETAWKERRAAMEAPALCQANNGDTN----LAGKFHKTLPHDKFGRVDEDAFRALEDCIYSAEYGACE 711
            C   D+LD   P  R++     R   A  E          C  NNGD       AG+FHKTLPHDKFG+VDEDA++ L++CI++++   C+
Sbjct:   73 CRVRDSLDFLDPVPRAKVTLLKRLAIAKDE----FSVGPTCHINNGDEENVPLFAGQFHKTLPHDKFGQVDEDAYKKLQECIFTSDINVCD 159
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BLAST of mRNA_P-fluviatile_contig8.14312.1 vs. uniprot
Match: Q7X9V0_9PHAE (Vanadium-dependent bromoperoxidase 2 n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7X9V0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 6.800e-9
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:  451 CETDDALDPAKPRARSRHAYRLRKETAWKERRAAMEAPALCQANNGDTN----LAGKFHKTLPHDKFGRVDEDAFRALEDCIYSAEYGACE 711
            C   D+LD   P  R++     R   A  E    +     C  NNGD       AG++HKTLPHDKFG+VDEDA++ L +C+++++   CE
Sbjct:   73 CRVRDSLDFLDPVPRAKVTLLKRLAIAKDE----ISVGPTCHVNNGDEENVPLFAGQYHKTLPHDKFGQVDEDAYKKLLECVFTSDINECE 159
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BLAST of mRNA_P-fluviatile_contig8.14312.1 vs. uniprot
Match: D7FID9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID9_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 8.970e-7
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  541 RRAAMEAP-ALCQANNGDTNLAGKFHKTLPHDKFGRV 648
            RR   EAP A C ANNG+ + AG+FHKTLPHD+FGRV
Sbjct:   10 RRGEAEAPPAACHANNGEADRAGEFHKTLPHDEFGRV 46
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
PRXV_ASCNO4.910e-1448.86Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
A0A3G3BM34_SACJA1.510e-939.56Vanadium-dependent bromine peroxidase n=1 Tax=Sacc... [more]
Q7X9V0_9PHAE6.800e-938.46Vanadium-dependent bromoperoxidase 2 n=2 Tax=Lamin... [more]
D7FID9_ECTSI8.970e-767.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:321187..322880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D8LTP5
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBromoperoxidase/chloroperoxidase, C-terminal
Ec32 orthologEc-11_001530.1
Exons3
Model size714
Cds size714
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14312.1prot_P-fluviatile_contig8.14312.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 321187..322880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817220.859607-CDS-P-fluviatile_contig8:321186..3212551622817220.859607-CDS-P-fluviatile_contig8:321186..321255Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 321187..321255 -
1693571557.4990308-CDS-P-fluviatile_contig8:321186..3212551693571557.4990308-CDS-P-fluviatile_contig8:321186..321255Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 321187..321255 -
1622817220.8708537-CDS-P-fluviatile_contig8:321903..3220651622817220.8708537-CDS-P-fluviatile_contig8:321903..322065Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 321904..322065 -
1693571557.511007-CDS-P-fluviatile_contig8:321903..3220651693571557.511007-CDS-P-fluviatile_contig8:321903..322065Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 321904..322065 -
1622817220.8842657-CDS-P-fluviatile_contig8:322397..3228801622817220.8842657-CDS-P-fluviatile_contig8:322397..322880Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 322398..322880 -
1693571557.5209038-CDS-P-fluviatile_contig8:322397..3228801693571557.5209038-CDS-P-fluviatile_contig8:322397..322880Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 322398..322880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14312.1

>prot_P-fluviatile_contig8.14312.1 ID=prot_P-fluviatile_contig8.14312.1|Name=mRNA_P-fluviatile_contig8.14312.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=238bp
NVTSVLADQSPKSTPAAQAVASPRLRGTKAAGEVASSRSLAARKWTRKEG
AAAHHRRGVAAASEGSQATSSTAARRNRLLDLSDGPVGLTIATRTEGGTG
GVPYHQGQATEGTSSTAPRRLSSENEDGGNSHQRNGDEDNGCDDDGEYGE
CETDDALDPAKPRARSRHAYRLRKETAWKERRAAMEAPALCQANNGDTNL
AGKFHKTLPHDKFGRVDEDAFRALEDCIYSAEYGACEA
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mRNA from alignment at P-fluviatile_contig8:321187..322880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14312.1 ID=mRNA_P-fluviatile_contig8.14312.1|Name=mRNA_P-fluviatile_contig8.14312.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1694bp|location=Sequence derived from alignment at P-fluviatile_contig8:321187..322880- (Porterinema fluviatile SAG_2381)
AACGTCACCAGCGTCCTCGCCGACCAGTCACCAAAGAGTACACCAGCGGC
ACAAGCGGTGGCATCACCAAGACTACGAGGCACGAAGGCTGCGGGCGAGG
TCGCCTCCTCCCGTTCTTTGGCGGCAAGAAAATGGACGAGAAAAGAGGGT
GCCGCTGCCCATCACCGGCGGGGAGTTGCGGCTGCTTCCGAGGGAAGCCA
AGCGACAAGTTCGACAGCAGCTCGTCGGAATCGTCTGTTAGATCTCAGTG
ATGGCCCCGTTGGCCTAACAATAGCAACTAGGACGGAGGGGGGTACAGGA
GGGGTTCCGTATCATCAGGGCCAGGCTACCGAGGGTACGTCATCGACGGC
TCCGCGGCGACTCAGTAGTGAAAACGAAGACGGTGGGAATAGCCATCAGC
GGAACGGCGACGAAGACAACGGATGCGATGATGATGGCGAATACGGCGAG
TGCGAGACCGACGACGCGTTGGATCCAGCAAAGGTACGTGCTCTCTTTCG
ACGGGGGTGCAGGTTTGCCAATTCCCTAAAGGCGAGTTACCTCCACATCA
CATCGCCATAAGACAATGAGTCAGCCAAGACGTCCGCTCCACCGCCAATA
TACATCAGTCGAGACGACACTTCAAGATTCTTGCGCAAAAAACAAATCTA
AAGAAGAATCGTATACCTCTCTTCTTCGGTATTACGGAGCTAACTGTTCA
TGCCTGGATCCAATCCGTGCAGCTCTAATAGTCTATCACCACACCCTTAA
CTCGCAAAAAAAAAGAAACGACTACTCATCAAGCAACCCCAACGCCCAAT
CGTACCGCCACTCAGCCGAGAGCGAGGTCTCGGCATGCCTACCGCCTGCG
GAAGGAGACAGCCTGGAAGGAGAGGCGGGCGGCGATGGAGGCACCAGCAC
TCTGCCAAGCGAACAATGGGGACACCAACCTTGCCGGAAAATTCCACAAG
ACGTTGCCGCACGACAAATTCGGCCGGGTACGTCGTGTCGCTCCGAACTC
GTGGCTTGTGAAGGGGGGAATACACCAAGGCCGGGAGGAGATTTGCGCAT
TCGCTATGATATATTTTTTTGAGACAAAGGGCATGTGCGATTTGAAGTTG
CACCAGAAAATGGGTCTTGTCGCTTTATTTAAGGATAGCCACCCCGGCGA
AAACGGGAGGATACGAATAGCCATATCTTGTGCTTGTGTAGCCTTCGAAA
CCTATCTTTGAGTATTTGAAACGGTGTTCACAAAGTTTGTGGGAATATAG
CTGTATTTGGTGAATGCAATCATACCATTCTATTTTATTTGTTGATTGCT
TAGGCTACAACGCCTCATGGAGGTTCACGCCACACAGATCGAACTACGTA
CGTCTAGCAAAAATATGCGGGCGGGGCTGGCCTGCGACACCAGAACGAGA
AAAAGCGATGACCCTTGCTTGGCCGCCTGCACTATTTTTCGACCCTGTTC
TTATTATGCTGCTACCATTTGCCTCCCGACAATTTGTCAAGCCAAACGCA
TACACAAACCGCAAAAATCGAGCGCTTAGACTCATTTCACCCGCATTGAT
GAACAATATCTTGCCTTCACATCAGCCGAGTTCCTTTATTGTCAACATCA
TCACCGACCCTGTTCATTTCTTCAGGTGGATGAGGACGCGTTTCGAGCCC
TCGAGGACTGCATTTACTCGGCGGAGTATGGCGCATGCGAGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:321187..322880-

>mRNA_P-fluviatile_contig8.14312.1 ID=mRNA_P-fluviatile_contig8.14312.1|Name=mRNA_P-fluviatile_contig8.14312.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1428bp|location=Sequence derived from alignment at P-fluviatile_contig8:321187..322880- (Porterinema fluviatile SAG_2381)
AACGTCACCAGCGTCCTCGCCGACCAGTCACCAAAGAGTACACCAGCGGC
ACAAGCGGTGGCATCACCAAGACTACGAGGCACGAAGGCTGCGGGCGAGG
TCGCCTCCTCCCGTTCTTTGGCGGCAAGAAAATGGACGAGAAAAGAGGGT
GCCGCTGCCCATCACCGGCGGGGAGTTGCGGCTGCTTCCGAGGGAAGCCA
AGCGACAAGTTCGACAGCAGCTCGTCGGAATCGTCTGTTAGATCTCAGTG
ATGGCCCCGTTGGCCTAACAATAGCAACTAGGACGGAGGGGGGTACAGGA
GGGGTTCCGTATCATCAGGGCCAGGCTACCGAGGGTACGTCATCGACGGC
TCCGCGGCGACTCAGTAGTGAAAACGAAGACGGTGGGAATAGCCATCAGC
GGAACGGCGACGAAGACAACGGATGCGATGATGATGGCGAATACGGCGAG
TGCGAGACCGACGACGCGTTGGATCCAGCAAAGAACGTCACCAGCGTCCT
CGCCGACCAGTCACCAAAGAGTACACCAGCGGCACAAGCGGTGGCATCAC
CAAGACTACGAGGCACGAAGGCTGCGGGCGAGGTCGCCTCCTCCCGTTCT
TTGGCGGCAAGAAAATGGACGAGAAAAGAGGGTGCCGCTGCCCATCACCG
GCGGGGAGTTGCGGCTGCTTCCGAGGGAAGCCAAGCGACAAGTTCGACAG
CAGCTCGTCGGAATCGTCTGTTAGATCTCAGTGATGGCCCCGTTGGCCTA
ACAATAGCAACTAGGACGGAGGGGGGTACAGGAGGGGTTCCGTATCATCA
GGGCCAGGCTACCGAGGGTACGTCATCGACGGCTCCGCGGCGACTCAGTA
GTGAAAACGAAGACGGTGGGAATAGCCATCAGCGGAACGGCGACGAAGAC
AACGGATGCGATGATGATGGCGAATACGGCGAGTGCGAGACCGACGACGC
GTTGGATCCAGCAAAGCCGAGAGCGAGGTCTCGGCATGCCTACCGCCTGC
GGAAGGAGACAGCCTGGAAGGAGAGGCGGGCGGCGATGGAGGCACCAGCA
CTCTGCCAAGCGAACAATGGGGACACCAACCTTGCCGGAAAATTCCACAA
GACGTTGCCGCACGACAAATTCGGCCGGCCGAGAGCGAGGTCTCGGCATG
CCTACCGCCTGCGGAAGGAGACAGCCTGGAAGGAGAGGCGGGCGGCGATG
GAGGCACCAGCACTCTGCCAAGCGAACAATGGGGACACCAACCTTGCCGG
AAAATTCCACAAGACGTTGCCGCACGACAAATTCGGCCGGGTGGATGAGG
ACGCGTTTCGAGCCCTCGAGGACTGCATTTACTCGGCGGAGTATGGCGCA
TGCGAGGCGGTGGATGAGGACGCGTTTCGAGCCCTCGAGGACTGCATTTA
CTCGGCGGAGTATGGCGCATGCGAGGCG
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