mRNA_P-fluviatile_contig8.14309.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig8.14309.1
Unique Name	mRNA_P-fluviatile_contig8.14309.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig8.14309.1 vs. uniprot
Match: A0A6H5JS72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS72_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.890e-41
Identity = 122/333 (36.64%), Postives = 154/333 (46.25%), Query Frame = 1

Query:   10 GASRTSVFTATWPPYALAMDLAGGVRGGQGQGEHPGPYCQIEIRTISIRTDGSVLRSPETRNEAQDAGGLDGTDNVVFRKRSILLRSYNSIFLSEDGIYSLTLSDCHGFIPISANHFEDTKS----RFTSSKGGASHAEERRGGSGPAVDTARILFAPIPLSIEFCVERSQATGGGTAVGNFHLHPIAQVPHLEKEPPFRMAISSSGP-TAVDGHR---------QDPEHRVGSSA---ENPPTQRGCQTCAEERGNGGCRVLSSSASCRVCLFFGAVLGAVLCLLSTWLMVARG-CGKDFWERLLIFL--DGAEGKSKAGWRGSIAGLQGAK 948
            GASR  VFTATWPPY  A       +         GPYCQ+ IRT+  RT G+   S          GG     +++F +  +LLRSYNS+ LS+DG YSLTLSDCHGFIPI+ +  +   S    R  +  GGA+   E +       +  R+LF P+P SI+F V R QAT  G  +GNFHL P+A VP L+  P F    S++ P     GH          Q+      SSA    +    R    C  E    G     SS                L L+   L+V RG  GKDF E     L  DG  G  K+GW G I  + G K
Sbjct:   40 GASR--VFTATWPPYTPASTRGEDHQQADRDDRESGPYCQVAIRTLRARTSGAAFISSSEATTGHGEGG-----DLLFVQPGLLLRSYNSVSLSDDGAYSLTLSDCHGFIPIATSSPDRPASSPPWRSRNHDGGAAGRPEWQ-----MAEIGRLLFLPLPSSIDFEVNRRQATSSGAIIGNFHLLPVAHVPQLQHAPVFNTETSTTSPGIRTVGHADYTPGVPVLQESSRAYFSSAMAAADTLCDREKMACTGEGPGVGEGTAPSSIGGGFTXXXXXXXXXSLLLV---LVVFRGGWGKDFLENFWTLLKGDGDAGMKKSGWGGFIVSIGGEK 357

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BLAST of mRNA_P-fluviatile_contig8.14309.1 vs. uniprot
Match: D7FIC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC8_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 4.760e-41
Identity = 110/301 (36.54%), Postives = 143/301 (47.51%), Query Frame = 1

Query:  115 GPYCQIEIRTISIRTDGSVLRSPETRNEAQDAGGLDGTDNVVFRKRSILLRSYNSIFLSEDGIYSLTLSDCHGFIPIS----ANHFEDTKSRFTSSKGGASHAEERRGGSGPAVDTARILFAPIPLSIEFCVERSQATGGGTAVGNFHLHPIAQVPHLEKEPPFRMAISSSGPTA-VDGHR---------QDPEHRVGSSAENPPTQRGCQTCAEERGNGGC-----RVLSSSASCRVCLFF--GAVLGAVLCLLSTWLMVARGCGKDFWERLLIFL--DGAEGKSKAGWRGSIAGLQGAK 948
            GPYCQ+ IRT+  RT G+   S       Q  GG     +++F +R +L+RSYNS+ LS+DG YSLTLSDC+GF+PI+    A        R  +  G  +   ER+       +  RILF P+P S+EF V   QAT  GT +GNFHL P+A VP L+  P F    +++ P     GH           +P     SS         C     ERG  GC      V   +A   V   F  G  +G V  LL   ++   G GKDF E     L  DG  G  K+GWRG I  + G K
Sbjct:   17 GPYCQVAIRTLRARTSGAAFISSSEATTDQGEGG-----DLLFVERELLVRSYNSVSLSDDGTYSLTLSDCYGFMPITTSSPARRVSSASWRSRNHDGADAGRRERQ-----TAEIVRILFLPLPSSMEFVVNSGQATSSGTVIGNFHLLPVAHVPQLQHAPVFNAETTTTSPDIRTVGHAAYTPGVPVLHEPSRAYFSSTTAAAADSLC-----ERGEMGCIGEGPGVDEGTALSSVGGGFAGGVAVGVVFSLLLVLIIFRGGRGKDFMENFWTLLKGDGDAGMRKSGWRGFIVSVGGEK 302

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig8.14309.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig8.14309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JS72_9PHAE	2.890e-41	36.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FIC8_ECTSI	4.760e-41	36.54	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig8	contig	P-fluviatile_contig8:250230..252078 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	4
Model size	948
Cds size	948
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig8.14309.1	prot_P-fluviatile_contig8.14309.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig8 250230..252078 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817220.5503263-CDS-P-fluviatile_contig8:250229..250358	1622817220.5503263-CDS-P-fluviatile_contig8:250229..250358	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 250230..250358 +
1693571557.2604666-CDS-P-fluviatile_contig8:250229..250358	1693571557.2604666-CDS-P-fluviatile_contig8:250229..250358	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 250230..250358 +
1622817220.5661392-CDS-P-fluviatile_contig8:250681..250736	1622817220.5661392-CDS-P-fluviatile_contig8:250681..250736	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 250682..250736 +
1693571557.2707257-CDS-P-fluviatile_contig8:250681..250736	1693571557.2707257-CDS-P-fluviatile_contig8:250681..250736	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 250682..250736 +
1622817220.5775514-CDS-P-fluviatile_contig8:251067..251393	1622817220.5775514-CDS-P-fluviatile_contig8:251067..251393	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 251068..251393 +
1693571557.2813277-CDS-P-fluviatile_contig8:251067..251393	1693571557.2813277-CDS-P-fluviatile_contig8:251067..251393	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 251068..251393 +
1622817220.5883534-CDS-P-fluviatile_contig8:251640..252078	1622817220.5883534-CDS-P-fluviatile_contig8:251640..252078	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 251641..252078 +
1693571557.2921674-CDS-P-fluviatile_contig8:251640..252078	1693571557.2921674-CDS-P-fluviatile_contig8:251640..252078	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 251641..252078 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig8:250230..252078+
coding sequence from alignment at P-fluviatile_contig8:250230..252078+

protein sequence of mRNA_P-fluviatile_contig8.14309.1

>prot_P-fluviatile_contig8.14309.1 ID=prot_P-fluviatile_contig8.14309.1|Name=mRNA_P-fluviatile_contig8.14309.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=316bp
MVAGASRTSVFTATWPPYALAMDLAGGVRGGQGQGEHPGPYCQIEIRTIS
IRTDGSVLRSPETRNEAQDAGGLDGTDNVVFRKRSILLRSYNSIFLSEDG
IYSLTLSDCHGFIPISANHFEDTKSRFTSSKGGASHAEERRGGSGPAVDT
ARILFAPIPLSIEFCVERSQATGGGTAVGNFHLHPIAQVPHLEKEPPFRM
AISSSGPTAVDGHRQDPEHRVGSSAENPPTQRGCQTCAEERGNGGCRVLS
SSASCRVCLFFGAVLGAVLCLLSTWLMVARGCGKDFWERLLIFLDGAEGK
SKAGWRGSIAGLQGAK

mRNA from alignment at P-fluviatile_contig8:250230..252078+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig8.14309.1 ID=mRNA_P-fluviatile_contig8.14309.1|Name=mRNA_P-fluviatile_contig8.14309.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1849bp|location=Sequence derived from alignment at P-fluviatile_contig8:250230..252078+ (Porterinema fluviatile SAG_2381)
ATGGTTGCCGGAGCATCGAGAACGAGCGTGTTCACAGCAACTTGGCCCCC
GTATGCACTGGCCATGGATCTGGCCGGGGGCGTGCGAGGCGGGCAGGGAC
AAGGGGAGCATCCTGGGCCCTATTGCCAGGTGTAACCCTCGATTTTGTGG
CTTGAAGTACTCCCTCAGCTCTGGTCATGATCCCTCGCACTGCAACTTGA
GACGGTTCAAACTAATCAAGATAGATGCTGCTTCTTGATAGCACCTACCC
CCTCACTCGTACACAATCGAAGAGTTGCCGAAAAGAATGGCCACCTTACA
AGAACTTCCAACAACTTGCGAACGGTACATTCGGCTGATGAAAGTCTACT
GATCGCCACGGAGTGAAATCATCTCACCCGTAGATTTGAAATGAACACGA
CTTGAACTTTCTACTCGGTTATACAATGGCATACTTTCTCGGCACTTCAC
AGATTGAAATTCGGACAATATCGATCCGCACTGATGGGAGCGTCTTGAGA
TCCCCAGGTGAGAGGCGCCGGGGCTGGTCGTGTAACACAAAAGTGGACTA
ATCTCCATGTTCTGATGCTTGAGCTGTGGACTGTGTTTTCATTTTAGATT
TTCGTGAAATAAAGTGCATTGCGCTCGAGAGAGTACTTTGTATCTCGGGC
CGCGCCGACAATTTGAGGGCCGCTTTGTAATGTTTAGCTCGGTCGTCCCT
GACTTGGTTCATAGGCGACAATAGAAACACCTGAACAGGGTGAATCTGTT
CCCGCTGTTGAGGGTGAGCGGATGCTGATCTCCCATCGACGTATGGGTCA
AGCCAACTCGTGTTTCTCTTGTGTGCCTGCTTGTCCAGAGACAAGGAACG
AGGCGCAAGACGCAGGTGGCCTTGACGGCACCGACAATGTGGTTTTTCGC
AAGCGCTCGATACTCCTACGGAGTTACAACAGCATTTTCCTCTCCGAAGA
TGGAATCTACAGCCTAACTCTCTCGGACTGCCACGGTTTCATACCGATAT
CAGCAAACCACTTTGAGGACACGAAAAGTCGTTTTACCTCAAGCAAGGGC
GGGGCAAGCCATGCGGAGGAGCGCCGAGGAGGCAGCGGCCCAGCAGTGGA
TACAGCCCGCATTTTGTTCGCCCCCATTCCCCTTTCGATCGAGTTCTGTG
TGGAAAGGAGTCAGGTGCGTGTGCACACCTACTCCTCACTTCAAAATTTT
AGCACATTATCATTTCTGAATCCCATCAAAGAAGTCGATCACTTCGAAGC
AACTCCCTCTCTATGGAACTGCAGATTTGCAGGAAGGGGAAGTCCCACCG
GGTCGAACGATTGCATGATGCCGCATGCTTGCGTCATTGCGTGCTTTGCG
GGCACATGCTCGCCATTGTTTCCTCTCGCGCTGACACGACTGCTTCTGGA
CATTGCCGCAGGCCACCGGCGGTGGTACAGCGGTCGGAAACTTCCATCTT
CATCCCATTGCCCAAGTGCCTCACCTGGAAAAAGAACCACCGTTTCGCAT
GGCGATTTCAAGCTCCGGGCCCACCGCCGTCGACGGCCATCGACAGGATC
CCGAACATCGCGTGGGTTCATCGGCGGAGAACCCACCAACACAACGGGGT
TGTCAGACATGCGCAGAGGAGCGTGGAAACGGTGGATGTCGAGTGCTCTC
ATCATCGGCTTCGTGCAGGGTCTGCTTGTTTTTCGGGGCGGTTCTTGGAG
CGGTATTATGCCTCCTGTCGACGTGGCTGATGGTGGCGAGGGGTTGTGGC
AAGGATTTTTGGGAGAGGTTGCTGATATTTCTCGATGGAGCCGAGGGCAA
GAGCAAGGCGGGATGGAGGGGGTCCATCGCCGGCCTTCAAGGGGCGAAA

Coding sequence (CDS) from alignment at P-fluviatile_contig8:250230..252078+

>mRNA_P-fluviatile_contig8.14309.1 ID=mRNA_P-fluviatile_contig8.14309.1|Name=mRNA_P-fluviatile_contig8.14309.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1896bp|location=Sequence derived from alignment at P-fluviatile_contig8:250230..252078+ (Porterinema fluviatile SAG_2381)
ATGGTTGCCGGAGCATCGAGAACGAGCGTGTTCACAGCAACTTGGCCCCC
GTATGCACTGGCCATGGATCTGGCCGGGGGCGTGCGAGGCGGGCAGGGAC
AAGGGGAGCATCCTGGGCCCTATTGCCAGATGGTTGCCGGAGCATCGAGA
ACGAGCGTGTTCACAGCAACTTGGCCCCCGTATGCACTGGCCATGGATCT
GGCCGGGGGCGTGCGAGGCGGGCAGGGACAAGGGGAGCATCCTGGGCCCT
ATTGCCAGATTGAAATTCGGACAATATCGATCCGCACTGATGGGAGCGTC
TTGAGATCCCCAGATTGAAATTCGGACAATATCGATCCGCACTGATGGGA
GCGTCTTGAGATCCCCAGAGACAAGGAACGAGGCGCAAGACGCAGGTGGC
CTTGACGGCACCGACAATGTGGTTTTTCGCAAGCGCTCGATACTCCTACG
GAGTTACAACAGCATTTTCCTCTCCGAAGATGGAATCTACAGCCTAACTC
TCTCGGACTGCCACGGTTTCATACCGATATCAGCAAACCACTTTGAGGAC
ACGAAAAGTCGTTTTACCTCAAGCAAGGGCGGGGCAAGCCATGCGGAGGA
GCGCCGAGGAGGCAGCGGCCCAGCAGTGGATACAGCCCGCATTTTGTTCG
CCCCCATTCCCCTTTCGATCGAGTTCTGTGTGGAAAGGAGTCAGAGACAA
GGAACGAGGCGCAAGACGCAGGTGGCCTTGACGGCACCGACAATGTGGTT
TTTCGCAAGCGCTCGATACTCCTACGGAGTTACAACAGCATTTTCCTCTC
CGAAGATGGAATCTACAGCCTAACTCTCTCGGACTGCCACGGTTTCATAC
CGATATCAGCAAACCACTTTGAGGACACGAAAAGTCGTTTTACCTCAAGC
AAGGGCGGGGCAAGCCATGCGGAGGAGCGCCGAGGAGGCAGCGGCCCAGC
AGTGGATACAGCCCGCATTTTGTTCGCCCCCATTCCCCTTTCGATCGAGT
TCTGTGTGGAAAGGAGTCAGGCCACCGGCGGTGGTACAGCGGTCGGAAAC
TTCCATCTTCATCCCATTGCCCAAGTGCCTCACCTGGAAAAAGAACCACC
GTTTCGCATGGCGATTTCAAGCTCCGGGCCCACCGCCGTCGACGGCCATC
GACAGGATCCCGAACATCGCGTGGGTTCATCGGCGGAGAACCCACCAACA
CAACGGGGTTGTCAGACATGCGCAGAGGAGCGTGGAAACGGTGGATGTCG
AGTGCTCTCATCATCGGCTTCGTGCAGGGTCTGCTTGTTTTTCGGGGCGG
TTCTTGGAGCGGTATTATGCCTCCTGTCGACGTGGCTGATGGTGGCGAGG
GGTTGTGGCAAGGATTTTTGGGAGAGGTTGCTGATATTTCTCGATGGAGC
CGAGGGCAAGAGCAAGGCGGGATGGAGGGGGTCCATCGCCGGCCTTCAAG
GGGCGAAAGCCACCGGCGGTGGTACAGCGGTCGGAAACTTCCATCTTCAT
CCCATTGCCCAAGTGCCTCACCTGGAAAAAGAACCACCGTTTCGCATGGC
GATTTCAAGCTCCGGGCCCACCGCCGTCGACGGCCATCGACAGGATCCCG
AACATCGCGTGGGTTCATCGGCGGAGAACCCACCAACACAACGGGGTTGT
CAGACATGCGCAGAGGAGCGTGGAAACGGTGGATGTCGAGTGCTCTCATC
ATCGGCTTCGTGCAGGGTCTGCTTGTTTTTCGGGGCGGTTCTTGGAGCGG
TATTATGCCTCCTGTCGACGTGGCTGATGGTGGCGAGGGGTTGTGGCAAG
GATTTTTGGGAGAGGTTGCTGATATTTCTCGATGGAGCCGAGGGCAAGAG
CAAGGCGGGATGGAGGGGGTCCATCGCCGGCCTTCAAGGGGCGAAA