mRNA_P-fluviatile_contig8.14305.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14305.1
Unique NamemRNA_P-fluviatile_contig8.14305.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14305.1 vs. uniprot
Match: D7FID3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID3_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 5.070e-25
Identity = 84/175 (48.00%), Postives = 105/175 (60.00%), Query Frame = 2 
Query:    2 EPPSCSSRSSKPETARSGAVPGASVQSR-GGDGDGRGSDKNSLTVGIAGKQLSSSAGTHSGSGLIVPDSTAALAAVFSATVDKAPDERVHQNMKRAQDIRDRYLSQVQQMIMDESKEEGRRAAAIRAAAGHSLRLRRLHLRHNKEREEKRTLINRIRRDIELIVVQKMAALGLIR 523
            EPP      +K  +A +   PG + ++  GGD  G G   NS    + G    SS      S   +  S  A+A   SA      DERV + M +AQ++RDRY SQ++Q+IMDE  EE  RAAA+  A GH LR RRL L+H +ER+EKRTLIN IR+D ELIVVQKMAALGLIR
Sbjct:  382 EPPLRCRELAKMTSALAAGWPGGTAENESGGDDRGGGKSGNSCPS-LEGGSHKSSPVRKRESNWPIESSEDAMATFSSAAGTAQEDERVRRTMLQAQEMRDRYFSQIRQIIMDECAEEACRAAALEKAGGHPLRSRRLQLQHERERQEKRTLINWIRKDTELIVVQKMAALGLIR 555
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BLAST of mRNA_P-fluviatile_contig8.14305.1 vs. uniprot
Match: A0A6H5KZ56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ56_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.420e-12
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 2 
Query:  212 ALAAVFSATVDKAPDERVHQNMKRAQDIRDRYLSQVQQMIMDESKEEGRRAAAIRAAAGHSLRLRRLHLRHNKEREEKRTLINRIRRDIEL 484
            A+A   SA      DERV + M +AQ++RDRY    +QMI DE  EE  RAAA+  A GH LR +RL L+H +ER+EKRTLIN IR+D E+
Sbjct:  463 AMATFSSAAGTVQEDERVRRTMLQAQEMRDRYF---RQMIKDECAEEACRAAALAKAGGHPLRSKRLQLQHERERQEKRTLINWIRKDTEV 550
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FID3_ECTSI5.070e-2548.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ56_9PHAE2.420e-1252.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:206728..209632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001470.1
Exons3
Model size895
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14305.1prot_P-fluviatile_contig8.14305.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 207097..209358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817220.15572-UTR-P-fluviatile_contig8:206727..2070961622817220.15572-UTR-P-fluviatile_contig8:206727..207096Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 206728..207096 -
1693571549.3392885-UTR-P-fluviatile_contig8:206727..2070961693571549.3392885-UTR-P-fluviatile_contig8:206727..207096Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 206728..207096 -
1622817220.2024543-UTR-P-fluviatile_contig8:209358..2096321622817220.2024543-UTR-P-fluviatile_contig8:209358..209632Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 209359..209632 -
1693571549.3787317-UTR-P-fluviatile_contig8:209358..2096321693571549.3787317-UTR-P-fluviatile_contig8:209358..209632Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 209359..209632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817220.1671019-CDS-P-fluviatile_contig8:207096..2071411622817220.1671019-CDS-P-fluviatile_contig8:207096..207141Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 207097..207141 -
1693571549.3489375-CDS-P-fluviatile_contig8:207096..2071411693571549.3489375-CDS-P-fluviatile_contig8:207096..207141Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 207097..207141 -
1622817220.179313-CDS-P-fluviatile_contig8:208111..2082801622817220.179313-CDS-P-fluviatile_contig8:208111..208280Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 208112..208280 -
1693571549.3589172-CDS-P-fluviatile_contig8:208111..2082801693571549.3589172-CDS-P-fluviatile_contig8:208111..208280Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 208112..208280 -
1622817220.1913745-CDS-P-fluviatile_contig8:209320..2093581622817220.1913745-CDS-P-fluviatile_contig8:209320..209358Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 209321..209358 -
1693571549.3689828-CDS-P-fluviatile_contig8:209320..2093581693571549.3689828-CDS-P-fluviatile_contig8:209320..209358Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 209321..209358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14305.1

>prot_P-fluviatile_contig8.14305.1 ID=prot_P-fluviatile_contig8.14305.1|Name=mRNA_P-fluviatile_contig8.14305.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=84bp
MKRAQDIRDRYLSQVQQMIMDESKEEGRRAAAIRAAAGHSLRLRRLHLRH
NKEREEKRTLINRIRRDIELIVVQKMAALGLIR*
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mRNA from alignment at P-fluviatile_contig8:206728..209632-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14305.1 ID=mRNA_P-fluviatile_contig8.14305.1|Name=mRNA_P-fluviatile_contig8.14305.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2905bp|location=Sequence derived from alignment at P-fluviatile_contig8:206728..209632- (Porterinema fluviatile SAG_2381)
AGAGCCGCCGTCGTGCTCCAGTCGATCATCGAAGCCGGAGACCGCTCGCT
CCGGGGCTGTGCCGGGCGCAAGCGTGCAGTCCCGCGGTGGTGATGGTGAT
GGACGTGGGAGCGACAAGAACAGTCTTACGGTGGGGATAGCCGGCAAGCA
ACTGTCATCGAGTGCTGGCACGCACTCCGGCAGCGGACTGATCGTGCCTG
ACAGTACGGCAGCGTTGGCGGCAGTGTTTTCGGCGACGGTTGACAAGGCG
CCCGATGAGCGCGTGCATCAAAACATGAAGCGCGCGCAAGATATCAGGGA
TCGCTACCTCAGGTGTGTATCGGGCGTCGGTTGGTCAATAGTCGAACAGA
TGGAAGACAGTAGGAGGGCCGCCCAAACGGAGAGTCGCTGGAGACAAGCA
TGCACCACGCCGTTCCCAAATGCTTCTGGTGCTGCTGCTGGTGCCGCCTT
GTGCTGCTGCTGGTGCGGCCTTTCAGCGGCGAACAAGGAAAGGTTCAGTG
CGTTTTCTCGTTGCAGCAGCGGAATGTTTGACTTTGACGATACAAGCGTC
GTTTCATCGTACACGCTGACGGGAACAAGGAGTCCTTGAAATTGCCTGTA
TCAAGCTTTTGCTTGGCGCGCTCACTCCATTTCGCGCTCGTTTGGAACGG
GAAGAGAGGTGACTGATGGCCCACGCTCCATTCTTGTCCATGCTTGTGCC
ATGGCTGGTTGGTCTCGAGGTCACTTACGACGGAAAAGAAGTGATCACCG
TCGTTACTCCCGACGACCCCGCCTTTGCGCCCACATGGTCAAAAAATAGC
CTTCCTTTCGAAGTATCAACGCCCTCATGCCAAGGACGGAACGAGTCGGT
TTGCCAGAGTGGGTGGAGGAGTGAGAACCAATAGCCGAAAGGTAGGATCC
ATTGCAGGTGCATCCACTCCTCGCGAGGTCTCTTCTGCGCAAGGCGACAT
CGAAAACACGCACGAGTGCGTGAAAATTCGTTCGACCGGTTCGTTCCTAG
CATCACGGCTTTCCTCTGTCGCATATGCAACCGCATGCACAACATCATGC
ACAAACTTTCCCAACCGGCGCTCAAGTACACCAGCTTATTGACGCATGCG
CGAGTACCCGTCGTCCCCGCCGCATGCGCGTCACCGTCACCGACCCTACC
CCTGCCGATTGCTTCCATTTATTTGATTTGGCCATTTTCTAGGTTTTAAA
CTGCACATCGGCGAACGCGCATAGAGTACTACACCTCTATCACACCGACA
AGAGTGTCACCTGACCTTTTTATCCGTCCTGAGCCGATCCTTGTATCAGT
GCTGAGCCCTCCTTCCCTCGCTGCCGCTACACTTTTCCTCGCAACTCATC
AGTCAAGTGCAACAGATGATCATGGACGAGAGCAAGGAAGAAGGTCGCCG
GGCAGCCGCCATCCGCGCCGCCGCCGGGCACTCCCTCCGGTTGAGGCGCC
TCCATCTGCGGCACAATAAGGAAAGGGAGGAAAAGCGAACTCTCATCAAC
AGGATACGGAGGGACATAGAGGTGGGTGGGTGTGTAGGTGGGTTGCAATG
GTCCTTCTCCGTTCCATTTGCTTCGTGATTTCAATCCCTCCTTCAAGCTG
AGCTTCGTTGTTGTCGTGCGATTGTGCTGCATGCACGGACCGGCCGATGA
AGCCATCAGGTCTGTCATTGGTGCTCAGCCACGTGCGGCATTGGTCAGGG
TAGAAAGACTGGGTCAGGGTTTGATTGTTTGCTGAAGTTCGGAGTCAAGC
CAGGGTGTGTACGTGCCCTCGATTTCCATGCGTGCTGGCCAAAGTCTTCG
TGGACATCATATTCTCTGGTTTTGCCTCAATATCAGAGATTTACTGTTAC
CTGACGACTCAAACAACTCCGAGCAAGTCACAAACTGAACGTAGCATCCC
AAATAGGAATTTCTGAAAATTGAAACCTTTGCGCGAAACCCAATATCCTA
CCTTCCGCAGAAGTGGGCTTGCGCGTGAAAGACATCTATCTCGCTGCAGA
TGACACGATGAAAAATGGTCGATTAGAGACTTTGAGCGGTTTGACATGTT
TTTTTGCTACGCCAGCACAGCGGAAGGACTCCGTTTCCCGTGATACGCGC
ACGCCTAATTCTTCTCCCTCCATCTGAGCTTCGTTTAGTGCCCTTCCACT
CGCGGATTGATGACAGCAGCAGTTGCCCCCAATCCCTCGAGGTACATACT
CCTGTGCATCACGTCGGAAAGTAGAAAGCGGCGTTTTGACGGGAGCCGCT
GAAAATAACGAAACCTGCACGGCCAATTTCCTCGCTCGTCGAGCTCACCA
TGCTTAGCCCCTCATTTTCTGACTAACATCTCCGACTCGTTTTGTCGCTT
CTTCGTTTCAAACCGGCGCATTCCTGTATATGGTCTCTGCGAACACCCTC
CGCCGGCGTGTGTGTGCATGCACGCTGCCTCGGGGATTGGCCGTGAACTT
GCCATCGCTGCGGCCACCATCACCATTCTTTGCTGGCGAAGCTCATCGTG
GTCCAGAAAATGGCAGCACTCGGACTTATTCGATAGGGTGTACGATAATT
TTGCGTTTGTGTTCTGCGGTTGATTGTACGTGCAAGCATGATCTCCGCCT
GTCCCAGGTTCCGTGGTCTTATTGATCGCCAGAAATTTGTTAAATGGGCC
CTCGTTCAATCCGTGTTCGGCGACGGCACGTACGCCAGCCGTTTCCCCTC
TCTTAGACGTGACGAGTGTTTTGTTTTTTGTTGTTTCGCAGGTACCACTG
AATGTCTTTAAGACATGTACCGTTCCCGTGTTTGGCACGCCATGCTCAGC
ACAACTGTACTGAAGCCCGGTGGTTCTTGAGAGCGATAAGGGGCGGAAGT
ACAGGTTCTTCAGGTTTACCAATTGATATTTCAAATTCACGGACTCGCCG
AACAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:206728..209632-

>mRNA_P-fluviatile_contig8.14305.1 ID=mRNA_P-fluviatile_contig8.14305.1|Name=mRNA_P-fluviatile_contig8.14305.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=504bp|location=Sequence derived from alignment at P-fluviatile_contig8:206728..209632- (Porterinema fluviatile SAG_2381)
ATGAAGCGCGCGCAAGATATCAGGGATCGCTACCTCAGATGAAGCGCGCG
CAAGATATCAGGGATCGCTACCTCAGTCAAGTGCAACAGATGATCATGGA
CGAGAGCAAGGAAGAAGGTCGCCGGGCAGCCGCCATCCGCGCCGCCGCCG
GGCACTCCCTCCGGTTGAGGCGCCTCCATCTGCGGCACAATAAGGAAAGG
GAGGAAAAGCGAACTCTCATCAACAGGATACGGAGGGACATAGAGTCAAG
TGCAACAGATGATCATGGACGAGAGCAAGGAAGAAGGTCGCCGGGCAGCC
GCCATCCGCGCCGCCGCCGGGCACTCCCTCCGGTTGAGGCGCCTCCATCT
GCGGCACAATAAGGAAAGGGAGGAAAAGCGAACTCTCATCAACAGGATAC
GGAGGGACATAGAGCTCATCGTGGTCCAGAAAATGGCAGCACTCGGACTT
ATTCGATAGCTCATCGTGGTCCAGAAAATGGCAGCACTCGGACTTATTCG
ATAG
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