mRNA_P-fluviatile_contig8.14303.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14303.1
Unique NamemRNA_P-fluviatile_contig8.14303.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14303.1 vs. uniprot
Match: D7FID4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FID4_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 2.300e-60
Identity = 106/159 (66.67%), Postives = 120/159 (75.47%), Query Frame = 1 
Query:    1 MNEGALLRLLRPYRKVRGPDFHQPATRANQGKMAIGDGGVEKRQPLTKEERAEAERSLAAAAGAGVDGTASGGRGAEYVNSQHS--------AAEEGRAGPELIAPADFFKEFDAWVDGKYPGDRGSATKVKVAFRKQHRAMVAGLNLEDIEEIAQAMQ 453
            MNE +LLR LR YRKVRGPDFHQPATR+NQGK+  G+GGVEKRQPLTKEERAEAE+ LA AA AG       G G E  ++Q +         A+     P+LI P +F KEFDAWVDGKYPGDRG +TKVKVAFRKQHRA+V+ LNLEDIEEIAQAMQ
Sbjct:    1 MNEASLLRALRQYRKVRGPDFHQPATRSNQGKIENGNGGVEKRQPLTKEERAEAEKVLAEAAAAG-------GGGLESAHTQQALPGGDAGAGADADTTRPDLIDPVEFLKEFDAWVDGKYPGDRGRSTKVKVAFRKQHRAVVSKLNLEDIEEIAQAMQ 152
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BLAST of mRNA_P-fluviatile_contig8.14303.1 vs. uniprot
Match: A0A836CKU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.450e-18
Identity = 60/155 (38.71%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:    4 NEGALLRLLRPYRKVRGPDFHQPATRANQGKMAIGDGGVE-----KRQPLTKEERAEAERSLAAAAGA-GVDGTASGGRGAEYVNSQHSAAEEGRAGPELIAPADFFKEFDAWVDGKYPGDRGSATKVKVAFRKQHRAMVAGLNLEDIEEIAQAM 450
            +E + +R L  Y K+R  DF+ P     +  +             KR PLT EERA  E   A  A + G D +               A+    AG      ADF K FDAWVD ++P DR +ATKVKVAFR++H+ +VA LNLE+ EEIA+A+
Sbjct:    5 DEASFMRALSRYPKIRNSDFYLPLEEKPKSLLIAASRDASSTATAKRVPLTPEERAAQEAQRATQANSKGADNSX------XXXXXXGDASTGETAGAVAADSADFLKVFDAWVDSQWP-DRATATKVKVAFRREHKRLVASLNLEETEEIAEAL 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FID4_ECTSI2.300e-6066.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKU6_9STRA1.450e-1838.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:187881..190992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001480.1
Exons3
Model size456
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14303.1prot_P-fluviatile_contig8.14303.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 187881..190992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817219.9939015-CDS-P-fluviatile_contig8:187880..1879491622817219.9939015-CDS-P-fluviatile_contig8:187880..187949Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 187881..187949 -
1693571548.812387-CDS-P-fluviatile_contig8:187880..1879491693571548.812387-CDS-P-fluviatile_contig8:187880..187949Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 187881..187949 -
1622817220.004317-CDS-P-fluviatile_contig8:188850..1891111622817220.004317-CDS-P-fluviatile_contig8:188850..189111Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 188851..189111 -
1693571548.8224638-CDS-P-fluviatile_contig8:188850..1891111693571548.8224638-CDS-P-fluviatile_contig8:188850..189111Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 188851..189111 -
1622817220.0139382-CDS-P-fluviatile_contig8:190866..1909921622817220.0139382-CDS-P-fluviatile_contig8:190866..190992Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 190867..190992 -
1693571548.8321912-CDS-P-fluviatile_contig8:190866..1909921693571548.8321912-CDS-P-fluviatile_contig8:190866..190992Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 190867..190992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14303.1

>prot_P-fluviatile_contig8.14303.1 ID=prot_P-fluviatile_contig8.14303.1|Name=mRNA_P-fluviatile_contig8.14303.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=152bp
MNEGALLRLLRPYRKVRGPDFHQPATRANQGKMAIGDGGVEKRQPLTKEE
RAEAERSLAAAAGAGVDGTASGGRGAEYVNSQHSAAEEGRAGPELIAPAD
FFKEFDAWVDGKYPGDRGSATKVKVAFRKQHRAMVAGLNLEDIEEIAQAM
Q*
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mRNA from alignment at P-fluviatile_contig8:187881..190992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14303.1 ID=mRNA_P-fluviatile_contig8.14303.1|Name=mRNA_P-fluviatile_contig8.14303.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3112bp|location=Sequence derived from alignment at P-fluviatile_contig8:187881..190992- (Porterinema fluviatile SAG_2381)
ATGAACGAGGGAGCTCTCTTGAGATTATTGCGGCCGTACCGCAAGGTTCG
AGGTCCGGACTTTCATCAGCCGGCCACGAGGGCGAACCAGGGCAAGATGG
CGATCGGAGATGGGGGCGTAGAGAAGGTATCAGCAAAAGGTGTACCAGGT
GCTCTTTGTCCGCTGTGTTCGGTTCGCTTTGCTCATTGAAGTAGGATACT
GGTGGTGTGCGTATTGTCTTCAAGCCATTAATGGTTGGTGCGCCACGACA
TGGTTGGTGCGCCACGACAGGACGGGGCAACGCCACGCCAGCTCTCCGTC
TCCATGCTGAGCTCTGCACGGACCGCATGTTGCCGAAAGCATGTTATGCA
TATGCACTCGTCTCTTTCGCCACTGGCCATGAAATTGGTCCTGAGCAATG
TGCGCATATTCGTGCGGGTGATGTTACCTTAGCTGGGAAGAATGATGGCT
GGTGGCTCACGACATTTTCGGCAACTCACAATTATCCCGCACGCTCACTT
GCCTGCAACGGCAGCTCCGAGCGAGAGGGAAGCGAAGTTCGTGATCCCGG
CGGACGAATCTTTGCGAGAGAGCAGCTATGCCATGCCTCACCCTGCAGCA
TGGCCGCGCTCCATGCAAGCTTTCGGACTGTTTGTTTTCTGCGCCGTGAA
ATCTTCAAGGGGGAAAATTGTAGAAAAAGCAAGTAGCGGCAGGCGGTTTC
GAGGAAAGATCATGCTGCTACAATATCGGCAACGCCCGCTAAACCCAAGG
ACGGTTTGTAATTGACGTCATGCAGCGGTGACGCACGATTTCTTGCATCG
TTGTCGGCAATCCCGCTGTTAGCGGGGCAGCCACTGTACCTCGAATAGTC
TGTGCCCGCGCCAGGCCGGTCGGCGGCTTCAGCCTCCACTGTCTGTTGGT
CAACCCCTGGTGAAATGCCGACGAGTCTATCCCGAGAAAAGAGTCGGGGC
GTCGCGTCGCATCTTTTGGCGGGACAGCTCGGGTATTCCGATCTGCTGCT
GTGAAGAGAATGACAACGTCTAACAAAGCTTGAATTTACCACATATACCC
GTCCGAGTCTGGCGGCAAACTCTCCCAAGTCGTCGCCACGTAACTCGGAA
TACTGTACAGAGTAGAGCCTGCTGGTAAATACGAAGCCTCGGAAGAAGTC
TGGGCTCACATTTTCTTTTATCAAGTGAGAAAGAGTACCGAGCGAAATTT
TCTTATTTCTTTATTTGACACGAGCTAGAGGCACAAAAAAAAATACTCGC
CTCATTCACATTCAACGAAAGCGCGACGAGCAGGCTGGCACCCTGTACAC
AGCAGCAGTTCGTTAAAACGCGCCATTAATTGTAGGATTCTAGGGAAGAG
AGACCATTGTTATATGATGCAGTTCATCGACCCGTCAGTCATCGATGGCG
TCGTTCGTCCCGTTCGTGGGCGGGAGCTCCCTAGTCATCGCTCTTGCACT
TCGGCATCCCACAGCCGCGCTCAGCTTTCTGAAAATCAGGGCATTAATGG
TCGATCAGCCGCTTGTCTAAGTAGAACACACGAAGCCTTGCTCCGGTGGT
GGATAGCCGAACACGACTGAGAAACAGCAACGGTTGGGTGGTTTGCGATT
GGGAAGAAAGCCGAAGTGATAACAAAACAGTGGCCGTCAGCACGGCGACC
ATCGTGCACCTACTCAAACAAGGTTTATAGGCCAGCCGCATCTGACGCTC
TCCTGCCGTGCTCGCGGAGGTCGCCAGAACGTTGAGTGTGCTTCCACTGT
GAAAAGCAGCGAGAGCCCGCATCGACTCTTTGAGCGGCTAATCGACTCGA
GCACATCTCCTCATCACCTCCCGTCCCCTGCGCCCCATCCCGTCTCACCC
CTCACCGCGCCCCAACGCCGCATCTCGACAGCGACAACCGCTCACGAAGG
AGGAGCGAGCTGAGGCGGAAAGATCATTGGCGGCGGCGGCAGGGGCGGGC
GTGGACGGGACGGCATCGGGGGGCAGGGGAGCAGAATACGTAAATTCGCA
GCATTCGGCGGCTGAGGAGGGGCGAGCGGGACCAGAGCTGATTGCCCCTG
CCGACTTTTTCAAGGAGTTCGATGCCTGGGTGGACGGGAAGTACCCCGGG
GACAGGGGGAGCGCGACGAAAGTCAAAGTTGCGTTTAGAAAGGTGATTTT
ATTGTCCACATCTTGATTTCGGTACGCGGTTTGCTCTCATGGAGCATCTT
TTGCGGTGGTGCGCACACCTGTCGAGGAAATGGCGTCATCCTGACCGGCT
GCCCTTTAGTGTCGCACCAAACGAATCTGTTTCAACTTGTGGTCGTATCG
TACCGTATGTTATGGCCGTCCAATCTTAATTTCGCATCACGAGCTGGAAG
AGGATACGCCCTTCCCTCCCCTAACTCCATATGCCAATTAAGTGGTGCAT
CTGCTAGCGGCTTCATCCGCTGCGGCAACAATCAACTGCAAAACGCTTGT
ATGCTTCCAAGAAATGTAAACTTGCTCGATTGGCCAGGCCTCAGAGCACA
CAGCGACGACCTAAGCCAAGAACTTTTGCGCTCTTCGCGATCTCGGCGCA
GTCCCATAGTACCATATCATCGTAAAACTCTCTCCACTCTTGCGTAAAAC
TTGTGACTTTCATCTAGACAGCGACGCTTTTCAATCTGACACGCAAGGCA
GTGTCGCTGGATTCCGCTCAGGGCGCTGCAAGCAGCAGGCGTACCGTACT
AGGCTGGCGGTGGACTTTGCTCTCCATCAACCACGGCCGATCATGAATTC
GTCAACATCCACGTTCCATGAAGTTGTGTGTTGTTTCTCGCACTGACTAT
TTTTCGGAATACTAGGGCCTGTGGTCGCGAAGCTGGGCGTAGTCATTTCG
AAGGGAATAACATCTAGAATGATTAGACAAGTACTCGTACATTCACGTCC
ATATAATGCAACTCCACTTCCGAATCTCGCCGATCCCACGGGCATATTGC
TTCGCTTGTTCACCTGTCCGTGCCCGTTTGGTCCATCGTGCGTCTCTTGC
CCGCCGCCGCTCCCCTCTCTCCCCGCATTCCTCGCGTGTCCAGCAACATC
GAGCGATGGTGGCCGGGCTGAATCTGGAGGACATCGAGGAAATCGCACAA
GCCATGCAATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:187881..190992-

>mRNA_P-fluviatile_contig8.14303.1 ID=mRNA_P-fluviatile_contig8.14303.1|Name=mRNA_P-fluviatile_contig8.14303.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=912bp|location=Sequence derived from alignment at P-fluviatile_contig8:187881..190992- (Porterinema fluviatile SAG_2381)
ATGAACGAGGGAGCTCTCTTGAGATTATTGCGGCCGTACCGCAAGGTTCG
AGGTCCGGACTTTCATCAGCCGGCCACGAGGGCGAACCAGGGCAAGATGG
CGATCGGAGATGGGGGCGTAGAGAAGATGAACGAGGGAGCTCTCTTGAGA
TTATTGCGGCCGTACCGCAAGGTTCGAGGTCCGGACTTTCATCAGCCGGC
CACGAGGGCGAACCAGGGCAAGATGGCGATCGGAGATGGGGGCGTAGAGA
AGCGACAACCGCTCACGAAGGAGGAGCGAGCTGAGGCGGAAAGATCATTG
GCGGCGGCGGCAGGGGCGGGCGTGGACGGGACGGCATCGGGGGGCAGGGG
AGCAGAATACGTAAATTCGCAGCATTCGGCGGCTGAGGAGGGGCGAGCGG
GACCAGAGCTGATTGCCCCTGCCGACTTTTTCAAGGAGTTCGATGCCTGG
GTGGACGGGAAGTACCCCGGGGACAGGGGGAGCGCGACGAAAGTCAAAGT
TGCGTTTAGAAAGCGACAACCGCTCACGAAGGAGGAGCGAGCTGAGGCGG
AAAGATCATTGGCGGCGGCGGCAGGGGCGGGCGTGGACGGGACGGCATCG
GGGGGCAGGGGAGCAGAATACGTAAATTCGCAGCATTCGGCGGCTGAGGA
GGGGCGAGCGGGACCAGAGCTGATTGCCCCTGCCGACTTTTTCAAGGAGT
TCGATGCCTGGGTGGACGGGAAGTACCCCGGGGACAGGGGGAGCGCGACG
AAAGTCAAAGTTGCGTTTAGAAAGCAACATCGAGCGATGGTGGCCGGGCT
GAATCTGGAGGACATCGAGGAAATCGCACAAGCCATGCAATGACAACATC
GAGCGATGGTGGCCGGGCTGAATCTGGAGGACATCGAGGAAATCGCACAA
GCCATGCAATGA
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