mRNA_P-fluviatile_contig8.14302.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14302.1
Unique NamemRNA_P-fluviatile_contig8.14302.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14302.1 vs. uniprot
Match: D7FIB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIB8_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.490e-14
Identity = 50/132 (37.88%), Postives = 62/132 (46.97%), Query Frame = 1 
Query:  364 DICVPLDQDCTNDADCLACKRAAATNVTGFEDCQLYYGYQASICVNQ-----------------------------------AAQACCQAEAAPSNDCLENAAYLAFYGCRLSQDVPGGDCTTLTCDAVGAA 654
            D+C   +  C  D  C AC+  A++N  GF+ C   Y Y ASIC N                                    AAQACCQAEA+ S DCL N  Y+A+Y CRL  DV G +CT L+C AVG +
Sbjct:   42 DVCEDSNLACAEDTVCSACRETASSNTDGFQQCIANYVYSASICTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQACCQAEAS-STDCLANKFYVAYYDCRLVNDVVGEECTGLSCAAVGTS 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIB8_ECTSI2.490e-1437.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:179355..185668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1466
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14302.1prot_P-fluviatile_contig8.14302.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 179981..182897 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817219.9026685-UTR-P-fluviatile_contig8:179354..1799801622817219.9026685-UTR-P-fluviatile_contig8:179354..179980Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 179355..179980 -
1693571548.5168808-UTR-P-fluviatile_contig8:179354..1799801693571548.5168808-UTR-P-fluviatile_contig8:179354..179980Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 179355..179980 -
1622817219.9437196-UTR-P-fluviatile_contig8:182897..1829561622817219.9437196-UTR-P-fluviatile_contig8:182897..182956Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 182898..182956 -
1693571548.7943604-UTR-P-fluviatile_contig8:182897..1829561693571548.7943604-UTR-P-fluviatile_contig8:182897..182956Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 182898..182956 -
1622817219.96051-UTR-P-fluviatile_contig8:185466..1856681622817219.96051-UTR-P-fluviatile_contig8:185466..185668Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 185467..185668 -
1693571548.8030026-UTR-P-fluviatile_contig8:185466..1856681693571548.8030026-UTR-P-fluviatile_contig8:185466..185668Porterinema fluviatile SAG_2381UTRP-fluviatile_contig8 185467..185668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817219.9127457-CDS-P-fluviatile_contig8:179980..1803161622817219.9127457-CDS-P-fluviatile_contig8:179980..180316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 179981..180316 -
1693571548.7658472-CDS-P-fluviatile_contig8:179980..1803161693571548.7658472-CDS-P-fluviatile_contig8:179980..180316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 179981..180316 -
1622817219.9225457-CDS-P-fluviatile_contig8:181728..1818331622817219.9225457-CDS-P-fluviatile_contig8:181728..181833Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 181729..181833 -
1693571548.7752073-CDS-P-fluviatile_contig8:181728..1818331693571548.7752073-CDS-P-fluviatile_contig8:181728..181833Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 181729..181833 -
1622817219.9340093-CDS-P-fluviatile_contig8:182759..1828971622817219.9340093-CDS-P-fluviatile_contig8:182759..182897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 182760..182897 -
1693571548.7838037-CDS-P-fluviatile_contig8:182759..1828971693571548.7838037-CDS-P-fluviatile_contig8:182759..182897Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 182760..182897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14302.1

>prot_P-fluviatile_contig8.14302.1 ID=prot_P-fluviatile_contig8.14302.1|Name=mRNA_P-fluviatile_contig8.14302.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=193bp
MTPTTLPRLATALLLSTSSMVVQLEQGGAAYGKEDICVPLDQDCTNDADC
LACKRAAATNVTGFEDCQLYYGYQASICVNQAAQACCQAEAAPSNDCLEN
AAYLAFYGCRLSQDVPGGDCTTLTCDAVGAALADDDDAANGGASGNGAGN
DGDDDAEVNSTGGAGRATKSSAVLAIMTGLSAALVAAAAASV*
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mRNA from alignment at P-fluviatile_contig8:179355..185668-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14302.1 ID=mRNA_P-fluviatile_contig8.14302.1|Name=mRNA_P-fluviatile_contig8.14302.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6314bp|location=Sequence derived from alignment at P-fluviatile_contig8:179355..185668- (Porterinema fluviatile SAG_2381)
AAGACGAGCGCGCACAGACGCTGCGTTGCATTAGCCATCTGTACTTACCG
GCCTCGCGTTTCCTCCGCTTGTTGCTCTGGAAGGGTTAGAGGCCATTGCT
GCTAATACCTCGCCGAGGAACTCAGGAGGCATACCTTGCATACCAAAGCG
GTGACGGACCGGGCCAAGGCTAGCGGATTGCCCAGCCCGCACACCTTGAG
AGGTACGCGGGTGTGCATTTACTGGTCACTACGGTAGGGCTGAACAATAC
TCTCGAAGCGGAAGAAAGCGGTGTGCTGGGGTAGGTCCCTGCTTCAGGTT
TCCTGGCGACATGAATATTCAGTGACCAAGAGATAGAGAGATAGATGTCG
AGAGTGAGGGGTGAGAGATAGGCCGAAAGTTCTCCGTGTGGGCGCCCCCG
AACCTCATGTTCTCAAGCCATATCCCAGAGTGACTCCGTCGCGATTTCCC
TGTGTGTTCGGAACGCAATTAAGCTCGACCACGTCACACACGTGTCCCTT
TTTTTTTGCCGTGCTGTAACGTACTGAAATGTTGGGTCCCCTGGAACGTG
ATGGCAGGCCCCTATGCCAGAAAGGAGTCACATGTGCACTTGTGACGTGT
ACTAATCTCGGCGAAATGCGAACTGCGAAGGCCACGAAATGGAGCACAAT
ATTCGTTAATAGTTGGCCCCAGAGAGAAGTTATGGATGGTGATGAGTGGT
CGTACGTTTCTTGGCCCCATGCTCTACGAAGAGCAACGGCACATCACGCG
GCCGCAGTTGAGAAACGTCGAATTCGGGTCGAGGCTCAATTTCTATCTTT
GGCCCGACGAATGAAGCTAAGCCTCGTATTGTCAAATGAGTATCTTTTTC
GTCCATGCTGCCGGATCGTGCTGGCTTTAGTGTTTGTCTTTCTCCTATTG
TACGTGTGCTCCCGTCACGTGCACGGTGTTTAGAAGTGCTCTTCTTCGTG
ATCTTTGTCGTCCCAAAGTTATCACGGCTCAAATGCAGCCCACAATCAAC
GTCAAAGAAAAAGAGCCGAGAAACACATCTCAATCTAGGCAAGACAAGAA
ACACCCCGATGTGAAACAAGAGCGTCCGATACACCGCTGTATAAGAAATA
CGAGGTAGCTGTGGGAGTGCCGAGGATAAAAAACACCTACCTCTCGCCTC
TCCAGGGGTCCCCCACCTCCCGGCTATTATAGTGCATTTTGAGTCCAGGG
GGAGGGTGCATGTTTGTTGTGGCACTTACCGGATTTTTTTTAACTGATGG
ACATTGCTGTAGCCGTAATGCTTTCTTTTGGCGGGGTGATCCGTCCCTCC
ACTGATTCCAGACTTTCCGGGTGTCGGTCCGATCTCCCAACCACAACAAC
GCGACGTTCTTACGTTGCAGCCGCTGTTATCCACTTTTCTCGGGAACTAG
TAATGCTGGCGGCCACAAAACCGATCACCTTTGTATGTGTCACTTATTTT
GATCTGGTGAAACCTCGATTTTCTTAGACTTTCGGACCAATCAATTTACG
CCACATCAAAGACCCCAAGCCAACCAAAAATGTGTTCCGTCATCTGTTGG
CCCTACCGCCACCCTCAGCGCCACTGCTTGCTCGGGGGCAGCGGGGGAGG
GTCCGTAGCGCAAACAAAAATATGTATGTTTCTTTTGGACGAACAAATAC
GCGGTCAGAGTCGAAACGTTTTTCGTCAAATTGTGTAATTCTTTCGAGAT
GGACGTTGTGAGCGCCAGGACCACAAGCGCCTGCTTCACGATGTTTCGAG
AAAAAACATGGAGTCCAAAAAGTCCTGTGTGTGCTGGTTTCCTGAAGGAG
GGGGAAAGTAACGTGCCAAATATCTCAACCACGGGCCGAAGTCCAGCATT
CACAAGAACATTGTCGACTTTCCGCAGCATGCAGCAACCGTGTGCTTCCT
TTTTGTACCCCCGTATAGTTATGGCACAGTTGCCTTGAACTTTGAGTTTT
GCGCTTTGATGTTCCTGGACACCAACCACGACGCCTAGCAGGCTCGAGCC
ACAACGCTACTCGCCGCTTTTGTGCGGTCGTTCTTTCGATCCGCCGTGAG
CGCATGATAAATGGAAGACCCCGGACAGCACAGCATACGAAGTGCGAAGC
CTGTCAGCGGCCTGGAGTGGGCGCAGCGCGGGGCCATAAAATCCATTTCT
CCTGGCATGGTCGAAGATTTTTCGGCTATTTTATCGCAGATAACCAAACG
GCGACACCGCTTTTCGTGCTCACCGCCGCACCGTCACGGAATAGTGATAA
TCGATGCACAATCACTTTGCTTTACAGCATCGTAGATCGTAGGAGTGGGT
CAGAATTTCGAGCGCTTCTTTCCTTATTTTCACGCTGTCCGGTTTGTCTC
TCCCCCCGTAATAGTCTGCTGCATTCACGCTCTGCCTCTGCCTCTGTCTC
TATCACTCTCTCTCTTCACTCTCTCTTACTCCCTCTCCCCTTTCATCCCC
CCCTGTCTCCCTCTCCCTATCTCTCATTCTCTCTATCGCTCTCCCTTTCC
CTCTCCATGACACGCAATATATCTCCCCTGCTCTCTCTCTCCCCCACTCG
CTCTCTCCCCCACTCGCTCTCTCCTCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCTCGAAACT
CTCTGAATCTCTTTCACACACGATCTCATTCTCTCTTCTCTTCCTCATTC
CCTCTATCGCAGACGCAGGCGTGTTTGTTCCTTCCACAGCAGGGCGAGCG
GGCCTGAACGACTCGCAAATCATGACTCCCACGACGCTCCCTCGATTGGC
GACAGCCCTCCTCCTCTCCACCAGCTCGATGGTGGTGCAGCTCGAGCAAG
GAGGGGCTGCGTACGGGAAAGAAGACATTTGCGTACCGCTCGACCAAGAT
TGCACGAATGTGGGTGCCTCAGGGAGTCGGGTAGCCGCCACTGATTAGAA
GCAGCAGGGATCGTCAGACTCTGATGGACTTTTTCCCCACCCGGCATGGA
GTAGCGAGCAATATTTTTCGCCGCGTTCTGCTCACAAAGCAGCAAGTGTT
TTTCGTTCGACCGCCGCGCACGTGTCCCGTGCGGGTGTCGTATGATGTTG
TTAGTCGTCTTGACGCCCGGTACTGCGATGTAGCCAGCGATCGCGAAGCC
TTTGATTCGGGCGCAAGATTTGTCGACGGGACATTTTTTTGGTGTTCGCG
CGTGCTTAAATCGTGCCGTTCATGTAGCTTCATGTGTTCAATCTCATTAT
TTTTCCTTTACCCTACGGCGTGCAACCTTTTGTCTAATGGTGCGTGCGCC
TTCTGCGACTGTTTCGGTGATGACCCATCAAGCGGCCCAAGTGGTGCACA
AGATGTCACCCCCCCCCCTGGGTCGACTTTTGATGCTCGATATCTCGACC
GCAAGGGTTCGACCAATATTGAACGATGCGTCGCTGCAAAGCTCTCGATA
TCATCTCTCGACAGCCGCTCCATTTTTTTATTCTTTCTCCTTTGCCGCGG
AAATCGAACTTTGAAAATCGACCGAGGGCTGTGTGGTATGATATGCGACC
TGCCGTACACCTTCGTCGAATCACTAGATTGTATCACAAAATCTGCTGGG
TACCGATCGTACCACCGCTGTACCCGACACAAGAACCGTTGACACGCGGT
CCCCGTCTGCAGGCTTTCTTCACAGGGTCGCAATCCTTCCTTGCTCTCTC
CCTCCCTCCCTTCTCTCCCCTTCCTTCTTTGCTTCCTTCGTTGCTTCCTT
CTCCCCGTTCTTCTTCCTTCACTCCTTCCTGCTTCTTTTCCTTATTCGCG
TCCTTGCTTCCACCACTCTCTCCGCCCGCACACAGGACGCGGACTGCCTC
GCGTGCAAGAGAGCGGCGGCCACCAACGTGACCGGTTTCGAGGATTGCCA
GCTCTACTACGGGTACCAGGCGTCCATATGTGTGAATCAGGTGAGAGCAC
CGGGGGGAAATAACACACACACCCCACCTAGGGCTGACCCTCGGCACAGC
GCTCCCGTCCTCCCCTCCTGGCGATCTAATGAATTTTTACCCAGAAACGC
TCGCCAGGTGCACGCACAATCACAGCGTTTTCATCGCCTGTGGATTACAC
ATATTTTTTCTCCCCTGCACCCCTCTCCCGGGACTGATGCGGCCTAGGCA
CAGCGTGCACCCCATCCGGGTGATGTGGTGAAAAATGATTGCTTCTCAGA
TGCACAACCACGAGGTTCAAGTCGTCTGGTAGCACGCACGCACATCAAAG
GAAGTTGACGTGTTGTTGTGTTTTCCTGGAGTTTTTCGTTGCCGAGGGTG
CTATGGAAGCTGAAAATCAACCTTCTCGACTAGTCAGCGCTGACTGGTCT
AGGGGGTTGATTTTCAGCTTCTATAGTGCCCATCCATCCACCATGCGTAT
GTGCCCGGGAGTGAGATCCGACGGCACCTGACCTCCAGTCTCGTCACGTC
CACCGACCCAGCCCGCACTATCACGTATGGCACGCGCCAACACCACCGCC
ACCGCCACCGCCACCGCCACGTCGTCCGGTCGGCCGGCCGGCCGGTGGCC
CGCGGTAGCGTGTATCGTGGCCGCCGCAACCAATCGAACGCTTCTTATTG
GTTTCCCTCCTGATCCAGTACAAGAGTAGACAACTTTTTGTCGTTACTCC
AAAACTCGACGTTTTTCACTGGCCGCGTGCGGCGCGCTTGTTTCGTGTTC
GATCTGGGACACGTTTCTTCCAGAGAATCGCTCGCGGTGGACATTCCAAA
ACGGAAGTCACGCTTCGAAAACAGAAGTCAGCTGTTGAATTGAGCCCCGT
TGATGCTGCACATTTTTTTTTTTTTGGGGGCGCATTCGTTGCTGCCGGAA
ATCCACAGCCGCAATTTTTCGACGTCGGAAGTGGCGCGGGTGGGTGTCTT
CGAGCCAGGCTTTTTTATTCTGGCCATTCGTACGCCACACTCGCGCCACA
CGTGAGCGGCCCGGCCTGTAGCAGGGCGGTTTTGTGCACTCTCCAGACGA
AATCATACCGCATTAGGCGACAGAGGGGGAGGAAGCGGTTGCTGATGTAG
GTGTTGTGCTGGAAATTCGCGTTGTGGGTGCGGTACAGCCGGTAAAGACA
ACTTTATCAGACCACATGGGGGCTGCTCGTGTCAGCCACTCGACATGAGG
ATGAAACACGGATAGCATTCTCAAAGCATTTTCTTGTTGCACGCCCGGTG
GTTCAATCGCTTCTCGTGTCAGTCGAGAGCGCATGCCAGAGGTTCACGAC
AGGCATATACCGCTGCGCTTACCCGCACCCCCCTCCCTTCTTCGCTCCCC
CTCTCTCTGCTTTCTCGCCTTTGGCGCGTCCGCACTCATCCTCCAAACCC
AGGCAGCGCAGGCGTGCTGCCAGGCCGAGGCAGCGCCGTCCAATGACTGC
CTCGAGAATGCCGCCTACTTGGCGTTCTATGGCTGCCGCCTCTCGCAGGA
CGTACCCGGTGGAGACTGTACGACCCTCACCTGCGATGCCGTGGGCGCCG
CACTAGCTGATGACGACGACGCCGCAAACGGCGGTGCTTCTGGCAACGGC
GCTGGCAACGATGGCGATGACGACGCGGAGGTCAACTCCACTGGAGGGGC
GGGACGGGCGACGAAGAGCAGCGCCGTCCTCGCGATCATGACCGGGCTTT
CCGCCGCCTTGGTGGCGGCTGCAGCGGCGTCTGTGTAGAGGGAAGGTGGA
GAGTGGGGAGGAGGGGTTCCTCGTCGAAGCTGTTTTTGTGCTCGTGGAAT
GTGTTTTTGGTTGGGGCACCCGCTTGTAGAATTTATTGGTCCTGAGTGCC
CGCCCGCGGCCGTTTGATGCGAAAAATTATTGTGTGGAAAACCGTTTTTG
CATTGAGTTATTTCCCAGAGTACATGCCCATTTGTAGAACCAAACCTTGC
AATGCACCACTACCAGTTTTCCCCCTATACCTGCCTACAGTGTGCGTACG
CGTCTTCAGCAAGGACGAACGCAGCAGTCGCGACTGACGGTGTTGCCTCT
TTGTGAGGGATGGATACACCCTTGTTGCTGGCCGCCTGTCCGCGTCAAGC
GATTATTTCATATTTCGCCTATACGTCAATGGATTGCGCTGGAGCCTTGA
GCTCATAGGATCAAGTGTGTTTAGAGTCGTGACTGGTTTAGACGCTGCCC
CCGCGTGCACCCAACAAACAAATCGACCTTACGGGACCCTAGGAAACCAT
TTTATGCAGTTCGATGGATATCAATACGCAATGGATTGTGTATCTTTATT
CTGCATGAACCTGCCCCATGTGGTGTTGAGTTGCCAGATTGAGCCGGTGC
CCCCCATGTAAGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:179355..185668-

>mRNA_P-fluviatile_contig8.14302.1 ID=mRNA_P-fluviatile_contig8.14302.1|Name=mRNA_P-fluviatile_contig8.14302.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1158bp|location=Sequence derived from alignment at P-fluviatile_contig8:179355..185668- (Porterinema fluviatile SAG_2381)
ATGACTCCCACGACGCTCCCTCGATTGGCGACAGCCCTCCTCCTCTCCAC
CAGCTCGATGGTGGTGCAGCTCGAGCAAGGAGGGGCTGCGTACGGGAAAG
AAGACATTTGCGTACCGCTCGACCAAGATTGCACGAATATGACTCCCACG
ACGCTCCCTCGATTGGCGACAGCCCTCCTCCTCTCCACCAGCTCGATGGT
GGTGCAGCTCGAGCAAGGAGGGGCTGCGTACGGGAAAGAAGACATTTGCG
TACCGCTCGACCAAGATTGCACGAATGACGCGGACTGCCTCGCGTGCAAG
AGAGCGGCGGCCACCAACGTGACCGGTTTCGAGGATTGCCAGCTCTACTA
CGGGTACCAGGCGTCCATATGTGTGAATCAGGACGCGGACTGCCTCGCGT
GCAAGAGAGCGGCGGCCACCAACGTGACCGGTTTCGAGGATTGCCAGCTC
TACTACGGGTACCAGGCGTCCATATGTGTGAATCAGGCAGCGCAGGCGTG
CTGCCAGGCCGAGGCAGCGCCGTCCAATGACTGCCTCGAGAATGCCGCCT
ACTTGGCGTTCTATGGCTGCCGCCTCTCGCAGGACGTACCCGGTGGAGAC
TGTACGACCCTCACCTGCGATGCCGTGGGCGCCGCACTAGCTGATGACGA
CGACGCCGCAAACGGCGGTGCTTCTGGCAACGGCGCTGGCAACGATGGCG
ATGACGACGCGGAGGTCAACTCCACTGGAGGGGCGGGACGGGCGACGAAG
AGCAGCGCCGTCCTCGCGATCATGACCGGGCTTTCCGCCGCCTTGGTGGC
GGCTGCAGCGGCGTCTGTGTAGGCAGCGCAGGCGTGCTGCCAGGCCGAGG
CAGCGCCGTCCAATGACTGCCTCGAGAATGCCGCCTACTTGGCGTTCTAT
GGCTGCCGCCTCTCGCAGGACGTACCCGGTGGAGACTGTACGACCCTCAC
CTGCGATGCCGTGGGCGCCGCACTAGCTGATGACGACGACGCCGCAAACG
GCGGTGCTTCTGGCAACGGCGCTGGCAACGATGGCGATGACGACGCGGAG
GTCAACTCCACTGGAGGGGCGGGACGGGCGACGAAGAGCAGCGCCGTCCT
CGCGATCATGACCGGGCTTTCCGCCGCCTTGGTGGCGGCTGCAGCGGCGT
CTGTGTAG
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