mRNA_P-fluviatile_contig8.14298.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14298.1
Unique NamemRNA_P-fluviatile_contig8.14298.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig8.14298.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.190e-54
Identity = 85/115 (73.91%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 MRRPVYLDGYKGEGHGSRFEYVEHLNDIALDCRQSNLRTSTTLHGNNLHMNRLKRAFWVEGVAGAALKAEEINRSQEPYWNIVRLLPPLPDFVFAFKRFKRPRGLPREADTSQPV 345
            MRR + +DGYKG  +  RF YVEHL+DIALDCR+SNLRTSTT HGNNLHMNRLKRAF  +GVAGA  KAEEI+RSQEPYW IVR+LP LPDFVFAFK  KRPR LPR+ +T QP 
Sbjct:    1 MRRTLNVDGYKGSPNEQRFGYVEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPA 115
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BLAST of mRNA_P-fluviatile_contig8.14298.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 6.190e-50
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:   43 HGSRFEYVEHLNDIALDCRQSNLRTSTTLHGNNLHMNRLKRAFWVEGVAGAALKAEEINRSQEPYWNIVRLLPPLPDFVFAFKRFKRPRGLPREADTSQPVGCSSAEQ 366
            HG  FEYVEHLN IALDCR+SNL TSTTLHGNNLHMNR K AFWVEGV GAA KAE +NRSQE YWNIVR LPPLPDFVFAFK  KRPR   R+ +T QP GC++ EQ
Sbjct:   57 HG--FEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPQ6_ECTSI1.190e-5473.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPN6_9PHAE6.190e-5075.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:118707..119557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_000970.1
Exons2
Model size369
Cds size369
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817219.505432-CDS-P-fluviatile_contig8:118706..1187551622817219.505432-CDS-P-fluviatile_contig8:118706..118755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 118707..118755 +
1693571544.6573992-CDS-P-fluviatile_contig8:118706..1187551693571544.6573992-CDS-P-fluviatile_contig8:118706..118755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 118707..118755 +
1622817219.5197148-CDS-P-fluviatile_contig8:119237..1195571622817219.5197148-CDS-P-fluviatile_contig8:119237..119557Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 119238..119557 +
1693571544.6669266-CDS-P-fluviatile_contig8:119237..1195571693571544.6669266-CDS-P-fluviatile_contig8:119237..119557Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 119238..119557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14298.1prot_P-fluviatile_contig8.14298.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 118707..119557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14298.1

>prot_P-fluviatile_contig8.14298.1 ID=prot_P-fluviatile_contig8.14298.1|Name=mRNA_P-fluviatile_contig8.14298.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=123bp
MRRPVYLDGYKGEGHGSRFEYVEHLNDIALDCRQSNLRTSTTLHGNNLHM
NRLKRAFWVEGVAGAALKAEEINRSQEPYWNIVRLLPPLPDFVFAFKRFK
RPRGLPREADTSQPVGCSSAEQ*
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mRNA from alignment at P-fluviatile_contig8:118707..119557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14298.1 ID=mRNA_P-fluviatile_contig8.14298.1|Name=mRNA_P-fluviatile_contig8.14298.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=851bp|location=Sequence derived from alignment at P-fluviatile_contig8:118707..119557+ (Porterinema fluviatile SAG_2381)
ATGCGTCGCCCAGTCTACCTCGACGGATACAAAGGTGAGGGGCATGGTTG
TGCGTGGACAATGTCAGGAACCAAGCGACATTCGAATACTTGCGGGCTGT
GTCTTGACCCAGACTGTGAACATCCTCAACTTAGCAAGACTTTCTCGGAT
GGTATTTGGTATGTCGAGCTTGGTACGACAACACGGTTTGCCGATGTGAA
GGGGCGTACGTCGTCGAATAGGCCGGGGCACAAAACAAGACGAAATGTCG
TGGCGTTCGTGAACAGATGTGCTGTCGTCCACCTCGGAGACGTCACCCCC
CATGAAATGGAGAACGCTCCCGCATTTCTCGTGTTCGACAGAAAGCATAT
CCACCGTGTCATAGACGAGTTGCACAACGGAATTAACTCAATCTACGCCG
ACCGGTACGATCCAGCCAGTTTTTTCAGCCAAAACTATCCAGTTCGTGCC
CAATGGTGCAAAAAGCCTGGGAGTTCTCAGTCTACTCTGTTTCATCGATG
GCTGCTTGGTTTGACAGGCTCGCCCAACGAGCACGATTTGAGTACGTCGA
ACACCTTAACGACATTGCCCTAGATTGTCGCCAAAGTAATTTGAGGACTT
CCACTACGTTGCACGGCAACAATCTGCACATGAACAGGTTGAAGCGGGCC
TTCTGGGTCGAGGGCGTAGCAGGCGCGGCACTCAAAGCGGAGGAGATAAA
TCGATCACAGGAACCGTACTGGAACATCGTGCGTCTTCTGCCCCCGCTGC
CTGATTTTGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGGTCTACCA
CGTGAAGCAGACACGTCGCAACCTGTCGGGTGTTCTTCGGCTGAGCAATG
A
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:118707..119557+

>mRNA_P-fluviatile_contig8.14298.1 ID=mRNA_P-fluviatile_contig8.14298.1|Name=mRNA_P-fluviatile_contig8.14298.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=738bp|location=Sequence derived from alignment at P-fluviatile_contig8:118707..119557+ (Porterinema fluviatile SAG_2381)
ATGCGTCGCCCAGTCTACCTCGACGGATACAAAGGTGAGGGGCATGGTTA
TGCGTCGCCCAGTCTACCTCGACGGATACAAAGGTGAGGGGCATGGTTCA
CGATTTGAGTACGTCGAACACCTTAACGACATTGCCCTAGATTGTCGCCA
AAGTAATTTGAGGACTTCCACTACGTTGCACGGCAACAATCTGCACATGA
ACAGGTTGAAGCGGGCCTTCTGGGTCGAGGGCGTAGCAGGCGCGGCACTC
AAAGCGGAGGAGATAAATCGATCACAGGAACCGTACTGGAACATCGTGCG
TCTTCTGCCCCCGCTGCCTGATTTTGTGTTCGCGTTCAAGCGTTTCAAAC
GGCCGCGAGGTCTACCACGTGAAGCAGACACGTCGCAACCTGTCGGGTGT
TCTTCGGCTGAGCAATGACACGATTTGAGTACGTCGAACACCTTAACGAC
ATTGCCCTAGATTGTCGCCAAAGTAATTTGAGGACTTCCACTACGTTGCA
CGGCAACAATCTGCACATGAACAGGTTGAAGCGGGCCTTCTGGGTCGAGG
GCGTAGCAGGCGCGGCACTCAAAGCGGAGGAGATAAATCGATCACAGGAA
CCGTACTGGAACATCGTGCGTCTTCTGCCCCCGCTGCCTGATTTTGTGTT
CGCGTTCAAGCGTTTCAAACGGCCGCGAGGTCTACCACGTGAAGCAGACA
CGTCGCAACCTGTCGGGTGTTCTTCGGCTGAGCAATGA
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