mRNA_P-fluviatile_contig8.14297.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig8.14297.1
Unique NamemRNA_P-fluviatile_contig8.14297.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig8.14297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig8contigP-fluviatile_contig8:112575..114042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817214.5992858-CDS-P-fluviatile_contig8:112574..1126581622817214.5992858-CDS-P-fluviatile_contig8:112574..112658Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 112575..112658 +
1693571529.8669376-CDS-P-fluviatile_contig8:112574..1126581693571529.8669376-CDS-P-fluviatile_contig8:112574..112658Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 112575..112658 +
1622817214.6102986-CDS-P-fluviatile_contig8:113964..1140421622817214.6102986-CDS-P-fluviatile_contig8:113964..114042Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 113965..114042 +
1693571529.8746285-CDS-P-fluviatile_contig8:113964..1140421693571529.8746285-CDS-P-fluviatile_contig8:113964..114042Porterinema fluviatile SAG_2381CDSP-fluviatile_contig8 113965..114042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig8.14297.1prot_P-fluviatile_contig8.14297.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig8 112575..114042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig8.14297.1

>prot_P-fluviatile_contig8.14297.1 ID=prot_P-fluviatile_contig8.14297.1|Name=mRNA_P-fluviatile_contig8.14297.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
VHTRRIALFELGQRSIIPDFFYQQRREQSCPLVWKQPTLSRVSSATVRTL
CLAT
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mRNA from alignment at P-fluviatile_contig8:112575..114042+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig8.14297.1 ID=mRNA_P-fluviatile_contig8.14297.1|Name=mRNA_P-fluviatile_contig8.14297.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1468bp|location=Sequence derived from alignment at P-fluviatile_contig8:112575..114042+ (Porterinema fluviatile SAG_2381)
GTGCATACTCGACGGATTGCGCTATTCGAACTCGGTCAGAGGTCGATCAT
TCCTGATTTCTTCTATCAACAGCGACGCGAACAGGTCTGAAACCAATTGC
AATATTGACGACTGCTACTGGTGGACGGCCGCCATTGTCAGACGGCCCCG
TCGCGGGAATGTATCGGAATGCTCTGCCTCATGGTGTCCAAAGCTTGAGT
CTTCGTGCCATCTGTGGTATGCATGCGATGTTTTTGTGCAACGAGGTTTC
TGTGCAACAGGGAATCCCTTGATCCGGACCTTCCCGCCTTTTTTTCTTCT
CGCAAAGCTGTATGCGAACTCATGCGTGCGCGTACGCGTTAGCGCATACC
GGATCCTGCCGTGCACATGTGGTGCTGACTCGGGACCTTGTCCCCGGGTT
AGCACTGTGCATCGCTCATCATCACGGGTGCTGTTCGCTGCGCACATGTG
CATTTGACTCGGGGCGCCTCCCCGGGTCGGGCAAAATTTTCCGTCTTTTT
GTGCTGGGGCTTTTCCCCGCTGGTCGTCCTGCAATAGTCTAATATGAGAG
ACCGTGCATGTGTGGGAGTGTGCTCACACATGTACCGGACTCAGCGGTGC
TGCTGGATATGAGACTGTGCGTGTGTGGGAGTGCGCTCACACACGTACCG
GACTCAGCGGTGCCCTGCCGCCCGTATGGTTATCGGCCGTGCAAGAGAGC
GTCGACTCTCTTTTCGCCTGCACTTGAGGTGGATCATGTGGTCTGCCCTG
GCCGCTTCTCGGATATATATTTTCTTCCGGGATTATCGGGTCTCCAATTT
CGACGACATCTTGTTCGTGATGGCGACGGCGCATGCGCACTGCTGCGGGC
CTGGCAGTACAGGCGCTATGCTCTATGCTGAGGCTTCCATCTGCGGGTTG
CTGTTTGGCAGCACCTTGTGGCACTTTCCGGGATGCTTTCGCCTGTTTGC
GCAAATTGCGCGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTTTCTGGTTTTCCTCATTTTTTTTTCAAGTGTATTTTTTTTCTCTCGC
ATCTGGGTGCACGAGTGTGCCGCATGATTTTACCTCAACCGAGCCTGTGT
AATTGTTAGCGATGCTCGCCGCTGATGATGAGGCTATTGTGGTAAATAAT
ATTTCGGTCAGTCCGCTCTTCGTTGCTGCTGCTACTGCCGCTGTCGCCTG
CATCATTCGTAGCTCGCATCAAGCGCGCCTTGACAAATGTTCTTTTTTTT
CCCTTGCGCAAGTTGGCCAATTTTTTTCCCCCTGCCTTTCCTCTCTTACG
GAACGGTAGCGCTCTCTTCGTTTTTTTTTCCTCTTGCTAACGCGAGCCCC
GATTCTGCTTCCTCTTCGCGATTTCTTTCTCTCTGAACAGTCATGTCCTC
TCGTATGGAAGCAACCCACCCTCAGTCGCGTGAGCTCCGCCACGGTTCGG
ACCCTATGCCTGGCCACT
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Coding sequence (CDS) from alignment at P-fluviatile_contig8:112575..114042+

>mRNA_P-fluviatile_contig8.14297.1 ID=mRNA_P-fluviatile_contig8.14297.1|Name=mRNA_P-fluviatile_contig8.14297.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig8:112575..114042+ (Porterinema fluviatile SAG_2381)
GTGCATACTCGACGGATTGCGCTATTCGAACTCGGTCAGAGGTCGATCAT
TCCTGATTTCTTCTATCAACAGCGACGCGAACAGGTGCATACTCGACGGA
TTGCGCTATTCGAACTCGGTCAGAGGTCGATCATTCCTGATTTCTTCTAT
CAACAGCGACGCGAACAGTCATGTCCTCTCGTATGGAAGCAACCCACCCT
CAGTCGCGTGAGCTCCGCCACGGTTCGGACCCTATGCCTGGCCACTTCAT
GTCCTCTCGTATGGAAGCAACCCACCCTCAGTCGCGTGAGCTCCGCCACG
GTTCGGACCCTATGCCTGGCCACT
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