mRNA_P-fluviatile_contig8.14295.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig8.14295.1
Unique Name	mRNA_P-fluviatile_contig8.14295.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig8.14295.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig8.14295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig8	contig	P-fluviatile_contig8:66906..69272 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	1682
Cds size	942
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig8.14295.1	prot_P-fluviatile_contig8.14295.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig8 67405..68466 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817219.3887472-UTR-P-fluviatile_contig8:66905..67404	1622817219.3887472-UTR-P-fluviatile_contig8:66905..67404	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig8 66906..67404 -
1693571544.580585-UTR-P-fluviatile_contig8:66905..67404	1693571544.580585-UTR-P-fluviatile_contig8:66905..67404	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig8 66906..67404 -
1622817219.4202733-UTR-P-fluviatile_contig8:69031..69272	1622817219.4202733-UTR-P-fluviatile_contig8:69031..69272	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig8 69032..69272 -
1693571544.617165-UTR-P-fluviatile_contig8:69031..69272	1693571544.617165-UTR-P-fluviatile_contig8:69031..69272	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig8 69032..69272 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817219.399206-CDS-P-fluviatile_contig8:67404..68252	1622817219.399206-CDS-P-fluviatile_contig8:67404..68252	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 67405..68252 -
1693571544.5995948-CDS-P-fluviatile_contig8:67404..68252	1693571544.5995948-CDS-P-fluviatile_contig8:67404..68252	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 67405..68252 -
1622817219.4101884-CDS-P-fluviatile_contig8:68372..68466	1622817219.4101884-CDS-P-fluviatile_contig8:68372..68466	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 68373..68466 -
1693571544.6088548-CDS-P-fluviatile_contig8:68372..68466	1693571544.6088548-CDS-P-fluviatile_contig8:68372..68466	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 68373..68466 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig8:66906..69272-
coding sequence from alignment at P-fluviatile_contig8:66906..69272-

protein sequence of mRNA_P-fluviatile_contig8.14295.1

>prot_P-fluviatile_contig8.14295.1 ID=prot_P-fluviatile_contig8.14295.1|Name=mRNA_P-fluviatile_contig8.14295.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=314bp
MEAVLDFLHSAVAGLTSSVTTMLGFGRRPDKGYLLKMEIKECKMTFSPVR
RTVYLEAYRTDALVPSGDHLQSIKYNDADNLIVLLVFETREKAKDFDCTM
ARMLPGVDDDFMVDTTISEVIIPSQARPLLRTDYKTLDSTSPPASRSSSA
SYGADIHAATTEQARWQSLENINIRGAMIMDCRHLIDAAKCAEMGICTAT
DQSNMVVVSPNFHRMLDGTRGQGGDSPTAYIEGIFIVVDDTIVDAHQKTR
TKVNVRIVFRDRDVYAWSTVRLNDRAKEEGYGKFLSHVYVRNPDVFMAAC
EWKARIVKDLWDE*

mRNA from alignment at P-fluviatile_contig8:66906..69272-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig8.14295.1 ID=mRNA_P-fluviatile_contig8.14295.1|Name=mRNA_P-fluviatile_contig8.14295.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2367bp|location=Sequence derived from alignment at P-fluviatile_contig8:66906..69272- (Porterinema fluviatile SAG_2381)
CCGGTGTCCCCAGCTCACCGGAGACATCGCGATCGAGGGCAGGAGTATCA
GAGAGAAAGTGCTGAACATCTGGGAGGTCGTTGGTGAGTCTTTCGCCCGT
TATGAACGCACGCCCTCGCCATCGTGGTATCTCGTCACCCCTTAACGCGG
TGGAACTGCTGTGACAGGCTTTTGCTGACACAACAACAGGGGAGAGGGTT
GGGGCACGTGAGCACATTTCTGCGATTGGGCGTGCCAGTTGGTGAGACAC
CGCGAACCGCCTCTGTTGTTTGCGTGACGTACTCAAGTGTGGTATGTGTA
GATGTCCGCATGTGCGCGCTGCGCTGCGGATTATACACACGTTCTTGAGG
TTTATAGGCACAAGCGGGTGGGCGACCGACTGCTGTTGACACAACGATAG
ACGTGTGTGATGAAGTGCTGTAAAGTGCGTGTGCAATGATGATGTCTTTG
TTTTAGTGAGAATGCCCGTGACTTGGTAAGATGACGGCAATGATGTGTAC
ATGCTTGACAGACTGGCTACATCGCTTTGTGCAGGACGTGGTGACACACA
GCGTGGTGGAAGAGACAGCTGTACATATACAGTACGGGCCAGCTAATAAC
AAACTGAAAATGCGCACGAGGCTGGCTTCCTCAAAAAAGACAGACACACA
GGTGCGGAAGACAATTGCGCTCACAAAGGCCGGAGTTAGAGCACAAAGCC
ATGTTTACGGTGCACACGAACGAGCCTCTGTTCTCTTCCCACAACAGCCT
AATCCTAACCCTAACACCTGACTGCTCTGCTGCTCCTTCCGTAATTCGAC
CTTCAGATGGAGGCCGTGCTGGATTTTCTGCACTCTGCTGTGGCAGGTCT
GACGAGCTCCGTAACGACGATGCTTGGATTTGGAAGGCGTCCTGATAAAG
GTTGGTGGCGTACACTAAAGTCTTCGTGAAAATTCGGTGCATGTTATTGT
TCTCAAGTGCGCGGCTGGACCACAAACAGTACTAACGTTGTTCCTGTGTA
TGCTGTCACACCACTTTCAGGTTATCTTCTGAAAATGGAGATCAAGGAAT
GCAAGATGACATTCTCCCCTGTTCGGCGCACGGTATACCTCGAGGCATAC
CGTACAGATGCCTTGGTGCCGTCGGGCGACCACCTGCAATCTATCAAATA
TAATGACGCCGACAACTTGATCGTGTTACTTGTCTTCGAGACGAGGGAAA
AGGCGAAGGACTTTGACTGCACGATGGCTCGAATGCTTCCAGGCGTTGAT
GACGACTTTATGGTCGATACGACCATCTCTGAAGTCATTATCCCATCGCA
AGCACGCCCTCTTCTTCGTACGGACTACAAAACTTTGGACAGTACATCCC
CTCCTGCAAGCAGGTCTTCATCCGCTTCGTACGGTGCGGATATTCATGCA
GCCACTACGGAACAAGCAAGGTGGCAGTCGCTGGAGAATATCAATATCCG
CGGGGCGATGATAATGGACTGTAGACATTTAATCGATGCCGCCAAGTGCG
CGGAGATGGGCATATGCACGGCTACGGACCAGAGCAACATGGTGGTCGTC
AGTCCTAACTTTCATCGGATGCTGGATGGTACCAGGGGGCAAGGTGGTGA
TTCACCCACCGCCTACATTGAGGGGATCTTCATTGTTGTGGACGACACCA
TTGTTGATGCCCACCAAAAGACTCGAACGAAGGTCAATGTGCGCATAGTC
TTCCGTGATCGGGACGTGTATGCGTGGTCGACAGTAAGACTGAATGATAG
AGCCAAAGAAGAAGGTTACGGGAAATTCCTCTCACACGTCTATGTTCGTA
ATCCTGATGTGTTTATGGCGGCATGCGAGTGGAAGGCCAGGATAGTGAAG
GACTTGTGGGATGAGTAAGTTTCGGTTCGTGCGCTAGAACCGGGGACGGC
TGACCATGGCTTGTTTTAGGTGTAGATGGTGGCACTGTGTGACATGCAAT
TCTTTTTTACATTATCCCGGGAACAATAGCGAGGCAGTTTTCTTTGTAGT
AATTATGTAGGCATATGCGTCACGGGCCGGGTCACATGCTGGGTAAACGA
GAATCTTCAGGCTCACGCCGCCGACCGAGCGGCTGAGGTCATGCTGGCAA
ATCGGCGGGTTGTCCCGAGCTGGCGCAGATATTTCTAGCTGATTTGTTTC
AATTGAGGGCATCTCCCGCCCACGCCACATTGCCGCCAAGCGACGCAGCT
CGGGCTCGCGCGGTGAGAACGAAATTGGGTGTGTGGTGCCACGCGAGCGT
CTGTGTGTGCAAACAAAGAATGGTTCAATTCAATTATTGGTGTAACCACT
TGAAAACCAAAACATGAGACACGACCATCGACATACACCCGAACACCCTC
CAGAGAGCCAATCCCCA

Coding sequence (CDS) from alignment at P-fluviatile_contig8:66906..69272-

>mRNA_P-fluviatile_contig8.14295.1 ID=mRNA_P-fluviatile_contig8.14295.1|Name=mRNA_P-fluviatile_contig8.14295.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1884bp|location=Sequence derived from alignment at P-fluviatile_contig8:66906..69272- (Porterinema fluviatile SAG_2381)
ATGGAGGCCGTGCTGGATTTTCTGCACTCTGCTGTGGCAGGTCTGACGAG
CTCCGTAACGACGATGCTTGGATTTGGAAGGCGTCCTGATAAAGATGGAG
GCCGTGCTGGATTTTCTGCACTCTGCTGTGGCAGGTCTGACGAGCTCCGT
AACGACGATGCTTGGATTTGGAAGGCGTCCTGATAAAGGTTATCTTCTGA
AAATGGAGATCAAGGAATGCAAGATGACATTCTCCCCTGTTCGGCGCACG
GTATACCTCGAGGCATACCGTACAGATGCCTTGGTGCCGTCGGGCGACCA
CCTGCAATCTATCAAATATAATGACGCCGACAACTTGATCGTGTTACTTG
TCTTCGAGACGAGGGAAAAGGCGAAGGACTTTGACTGCACGATGGCTCGA
ATGCTTCCAGGCGTTGATGACGACTTTATGGTCGATACGACCATCTCTGA
AGTCATTATCCCATCGCAAGCACGCCCTCTTCTTCGTACGGACTACAAAA
CTTTGGACAGTACATCCCCTCCTGCAAGCAGGTCTTCATCCGCTTCGTAC
GGTGCGGATATTCATGCAGCCACTACGGAACAAGCAAGGTGGCAGTCGCT
GGAGAATATCAATATCCGCGGGGCGATGATAATGGACTGTAGACATTTAA
TCGATGCCGCCAAGTGCGCGGAGATGGGCATATGCACGGCTACGGACCAG
AGCAACATGGTGGTCGTCAGTCCTAACTTTCATCGGATGCTGGATGGTAC
CAGGGGGCAAGGTGGTGATTCACCCACCGCCTACATTGAGGGGATCTTCA
TTGTTGTGGACGACACCATTGTTGATGCCCACCAAAAGACTCGAACGAAG
GTCAATGTGCGCATAGTCTTCCGTGATCGGGACGTGTATGCGTGGTCGAC
AGTAAGACTGAATGATAGAGCCAAAGAAGAAGGTTACGGGAAATTCCTCT
CACACGTCTATGTTCGTAATCCTGATGTGTTTATGGCGGCATGCGAGTGG
AAGGCCAGGATAGTGAAGGACTTGTGGGATGAGTAAGTTATCTTCTGAAA
ATGGAGATCAAGGAATGCAAGATGACATTCTCCCCTGTTCGGCGCACGGT
ATACCTCGAGGCATACCGTACAGATGCCTTGGTGCCGTCGGGCGACCACC
TGCAATCTATCAAATATAATGACGCCGACAACTTGATCGTGTTACTTGTC
TTCGAGACGAGGGAAAAGGCGAAGGACTTTGACTGCACGATGGCTCGAAT
GCTTCCAGGCGTTGATGACGACTTTATGGTCGATACGACCATCTCTGAAG
TCATTATCCCATCGCAAGCACGCCCTCTTCTTCGTACGGACTACAAAACT
TTGGACAGTACATCCCCTCCTGCAAGCAGGTCTTCATCCGCTTCGTACGG
TGCGGATATTCATGCAGCCACTACGGAACAAGCAAGGTGGCAGTCGCTGG
AGAATATCAATATCCGCGGGGCGATGATAATGGACTGTAGACATTTAATC
GATGCCGCCAAGTGCGCGGAGATGGGCATATGCACGGCTACGGACCAGAG
CAACATGGTGGTCGTCAGTCCTAACTTTCATCGGATGCTGGATGGTACCA
GGGGGCAAGGTGGTGATTCACCCACCGCCTACATTGAGGGGATCTTCATT
GTTGTGGACGACACCATTGTTGATGCCCACCAAAAGACTCGAACGAAGGT
CAATGTGCGCATAGTCTTCCGTGATCGGGACGTGTATGCGTGGTCGACAG
TAAGACTGAATGATAGAGCCAAAGAAGAAGGTTACGGGAAATTCCTCTCA
CACGTCTATGTTCGTAATCCTGATGTGTTTATGGCGGCATGCGAGTGGAA
GGCCAGGATAGTGAAGGACTTGTGGGATGAGTAA