mRNA_P-fluviatile_contig8.14290.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig8.14290.1
Unique Name	mRNA_P-fluviatile_contig8.14290.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig8.14290.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig8.14290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig8	contig	P-fluviatile_contig8:7499..11161 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	296
Cds size	198
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig8.14290.1	prot_P-fluviatile_contig8.14290.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig8 7499..7896 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817214.4758828-CDS-P-fluviatile_contig8:7498..7639	1622817214.4758828-CDS-P-fluviatile_contig8:7498..7639	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 7499..7639 -
1693571529.512989-CDS-P-fluviatile_contig8:7498..7639	1693571529.512989-CDS-P-fluviatile_contig8:7498..7639	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 7499..7639 -
1622817214.4860454-CDS-P-fluviatile_contig8:7839..7896	1622817214.4860454-CDS-P-fluviatile_contig8:7839..7896	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 7840..7896 -
1693571529.5249527-CDS-P-fluviatile_contig8:7839..7896	1693571529.5249527-CDS-P-fluviatile_contig8:7839..7896	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig8 7840..7896 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817214.4963038-UTR-P-fluviatile_contig8:7896..7926	1622817214.4963038-UTR-P-fluviatile_contig8:7896..7926	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig8 7897..7926 -
1693571529.5347006-UTR-P-fluviatile_contig8:7896..7926	1693571529.5347006-UTR-P-fluviatile_contig8:7896..7926	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig8 7897..7926 -
1622817214.5066955-UTR-P-fluviatile_contig8:11095..11161	1622817214.5066955-UTR-P-fluviatile_contig8:11095..11161	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig8 11096..11161 -
1693571529.805541-UTR-P-fluviatile_contig8:11095..11161	1693571529.805541-UTR-P-fluviatile_contig8:11095..11161	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig8 11096..11161 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig8:7499..11161-
coding sequence from alignment at P-fluviatile_contig8:7499..11161-

protein sequence of mRNA_P-fluviatile_contig8.14290.1

>prot_P-fluviatile_contig8.14290.1 ID=prot_P-fluviatile_contig8.14290.1|Name=mRNA_P-fluviatile_contig8.14290.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=66bp
MESAGKEFPLQGVGNGSTAGSQLSVKEILGILTLLVITGVMARSLNLVTK
LLERAASTFKPIFSES

mRNA from alignment at P-fluviatile_contig8:7499..11161-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig8.14290.1 ID=mRNA_P-fluviatile_contig8.14290.1|Name=mRNA_P-fluviatile_contig8.14290.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3663bp|location=Sequence derived from alignment at P-fluviatile_contig8:7499..11161- (Porterinema fluviatile SAG_2381)
CCTGCTACAGCGCTGTCTCGACATCTCCACTGATTCTCGCCAAAGCAAGC
CATTTATACGAAAAAGGTCAGTGCGGTCGGCGAGCGAGCTATGTACACAC
ACACCGGTTCTCACGTGTGCTTCGGTACATTTCGCGCGTACACCACGGGG
GTCCCCTCGAGGTCAAGACTGGGGCTGAATGCTGAAATACTTCTGTGGCT
CACGCAGCATCTTTGGTCGAGAGCGTCATATCGCCATTAGGTTAGATCTT
TCATCAACTCTCCGGAAGATGGAGGACGGCTGCCGTGCGCCCCAGCAATA
TAGACTCGCCTGCTCATGGAAAACAGTCACACAGAAAGAGATATCTCCTG
GGCTGTGCGCCACTTCAAATGTTCACCCGCGCCCGGCCCTGGGCCCTTCG
TATCATGTATCGCCCCCGCCAGAGGGGCAAAAAGAGAGTACATGCTGCAG
CTTGGTATGGGCTTGAGTGCTAGCCACTGTTGTAAACGGCGGGTGTGTGT
TTTGTGTTCGAAGATCAGTGCGTTCGACAATTCTTTGGCGACGGGTAAAG
GAGCGCACCTTTGGATTTCGAAAGTGTAGTCTACCCAGCGGTTCTCAAGC
ACAGTCTGGAGCTTCGGTAGATTTCGACGGGGGCACCCTCGACGTCAAGA
CGGGGGCTGAACGCTTGATAGGCTTCACATCGCCGTCAGGTCAGATCTTA
TCCACTGTCTTGAGGGTGGAGAACGACTGTCGTCCGGACAAGCAATGTAT
ATAGATTCGCTTTGTGTGTCCGGAAGCAGTGTCGAACAGCAATGCCGCAC
AGACTTTCGCGTGCTGCAATATGCACGTGGCAGCTTTAAACCAACCATTT
CGATGGAAAGCGGATTTTTGTTTGATAATGTGACCGGAATGCCGAGGGGG
GGGCTTGACCTATGCAGACGGAGGTGGCTGGGTTCGAGGGAACGAGTGTT
CTCGGGTGGGGTCGAGGAAGTTTCAGAATTGGGGACGCAGGGGCTGCAGA
GAGAGCAAGACGGTGGGTGCTCTTCTCTTGGTGTGACCGGAAGCAGTATC
GAACAGCAATGCCGCACAGACTTTCGCGTGCTGCAATATGCACGTGGCAG
CTTTAAACCAACCATTTCGATGGAAAGTGGATTTTGTTTGATGATGTGAC
GGGAATGCCGAGGGGAGGGCTTGACCCTTGCAGACGGAGGTGGCTGGGTT
CGAGGGAACGGGTGTTCTTGGGGTGGGGTCGAGGAAGTTTCGGAATTGGG
AACGCAGGGGCTGCAGAGAGAGCAAGACGGTGGGTGCTCTTCTCTCGGTG
TGACCGGAAGTAGTGTCGAACAACAATGCCGCACAGACTTTCGCGTGCTG
CAATATGCACGTGGCAGCTTTAAACCAACCATTTCGATGGAAAGCGGATT
TTTGTTTGATGATGTGACGGGAGTGCCGAGGGGAAGGGCTTGACCCTTGC
AGACGGAGGTGGCTGGGTTCGAGGGAACGGGTGTTCTTGGGGTGGGGTCG
AGGAAGTTTCGGAATTGGGAACGCAGGGGCTGCAGAGAGAGCAAGACGGT
GGGTGCTCTTCTCTCGGTGTGACCGGAAGTAGTGTCGAACAACAATGCCG
CACAGACTTTCGCGTGCTGCAATATGCACGTGGCAGCTTTAAACCAACCA
TTTCGATGGAAAGCGGATTTTTGTTTGATGATGTGACGGGAGTGCCGAGG
GGGAAGGGCTTGACCCTTGCAGACGGAGGTCAGTCTCTCCTTCATTTGGT
AGTTTAGTGTACAAGTGGATCAGATTTGTGGGTATTCTGTAGAGATATGT
AATGGCGGAGGCTATTCAGGGATAGAGACATGGAGATGGAATGCGTCTAC
TGCAGATGAATAAGGGGTTTCTGAGTTTCAGCAATTGTCAGATGGCAAGT
GATATAATGAAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATAGA
TTCGCCCGCTCGTGGCAACAGTAACACAGAATGAGACATCGCCTGGGGGC
TGCTGTGCACCATTTCAAATGTTCACCCGCACCCGCTCTCTTGGGCCTGC
TTTGAATCATTAACTCGCCCCCGTCAGAGGGACGAAAGGAGAATACATGC
TGCAGCTTGGGAGTGGCATGTACGCTCGCCCCTGCTGTGTGTTTGGGATG
CATCTTTTTGTGTGCGAAGTTCAGTCAGAGGTTCGAGAATCAGGAGCGAA
CCTCTGGATTTAGAAAGTACGAGTATAGACTACAGCAAGGGTCACGCAGA
TCGCAATGAGATGCCAGCCGAGCACGGCGGGGCGCATAAGCAACAACACT
CCGGGAAAGCGACGGTTGTATACGAATGACTTGCGCTGGACTTGGTGCAC
AGAGTCGAAATGGGACGACCGACATCGGACTGACCAATCAAAACTGCGGG
CAAACTCCTAAAATGGGTGGCTCCTCGTCCGTCTAGCCTGATGATTGATT
GGTCTAAATTTATGCTTCGTCAGCGGGAGAACAAAATACTCAGATGATTA
CACTAACAATTGTATCTGTTTCAGCAACGTGCTTCTGATGCTGTCTGCAC
AACAGCGGGTTGAATCCAGATCACGTAGTCATCTTTCACGAGGCTCAGAT
CCGCGCTTGTTCAGATCTCCAGGCTACTGCTGTATATCATCCACCGTCCA
CATGAGTAACATGTTTTCCGAAATTCTTTGAAGTTGAGCATGTTTTCCCG
AGGCATTTTGGAGATAAGCCGAAGTCTTGAATATCACGGTGTGATCTTAG
TCTCAATCAAGCCCCTCATGTCTCAGGGGCATCTTGAAGTGTGTAGCAGG
AAAATTCCTCTTGTAGCGACGTCGGATACCGCGTCGTGCCCTGAAATGTC
ACAAGAAGTAGATGCTGCGGTAAGACACGGATACGACAGGTGCTAAAAAA
GATTGGACATTGATGCGACAGTTTTTCCCCTTTGAATCAAAGGGAACATC
AGAGACGACCCCCCCCGCCGCTGCCACGAAGGATTCCGTACGAAGAAACT
ACTTTTACGCGTGTTTGTCTAGTGTACGTACAATATGCCGCCTCCATCCA
TGACAGCATTTGACACCTCAAGCTATCCGCTCATGGTTTTTGAGTTTACA
CGCCGCCCTCCCTCGGGAATTCTTGCTTGCAACAGGTTGAAGCGAAGCTG
ACAACACTGATCAACATGGAGTCTGCTGGGAAAGAATTTCCCTTACAGGG
CGTGGGAAATGGAAGCACGGCGGTGGGTGCGAAGACAAGATGTTACGCTG
TGTCTACTTTTTCAGAATTGAAATGTTTCAAGCTTAGGTTCCCTCGCTTG
ACGCACTTCGTCGATTGAAATCACTGTCTCAGATGAAACACGAGATGGTT
GGGCCTCACAGCTTTCACAAATCTTCTGGTATTCAATATCGCCCTTTCCC
CCGGCAATACCAACAAAATCAGGGCTCGCAACTTTCGGTGAAAGAAATAC
TGGGGATCCTCACGTTGCTAGTCATCACGGGGGTGATGGCAAGGAGCCTC
AACTTGGTGACGAAGCTGCTGGAACGAGCGGCGAGCACTTTCAAACCTAT
CTTCTCGGAATCG

Coding sequence (CDS) from alignment at P-fluviatile_contig8:7499..11161-

>mRNA_P-fluviatile_contig8.14290.1 ID=mRNA_P-fluviatile_contig8.14290.1|Name=mRNA_P-fluviatile_contig8.14290.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=396bp|location=Sequence derived from alignment at P-fluviatile_contig8:7499..11161- (Porterinema fluviatile SAG_2381)
ATGGAGTCTGCTGGGAAAGAATTTCCCTTACAGGGCGTGGGAAATGGAAG
CACGGCGATGGAGTCTGCTGGGAAAGAATTTCCCTTACAGGGCGTGGGAA
ATGGAAGCACGGCGGGCTCGCAACTTTCGGTGAAAGAAATACTGGGGATC
CTCACGTTGCTAGTCATCACGGGGGTGATGGCAAGGAGCCTCAACTTGGT
GACGAAGCTGCTGGAACGAGCGGCGAGCACTTTCAAACCTATCTTCTCGG
AATCGGGCTCGCAACTTTCGGTGAAAGAAATACTGGGGATCCTCACGTTG
CTAGTCATCACGGGGGTGATGGCAAGGAGCCTCAACTTGGTGACGAAGCT
GCTGGAACGAGCGGCGAGCACTTTCAAACCTATCTTCTCGGAATCG