mRNA_P-fluviatile_contig79.14288.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14288.1
Unique NamemRNA_P-fluviatile_contig79.14288.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: Q8QN79_ESV1K (EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K)

HSP 1 Score: 102 bits (255), Expect = 4.160e-24
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 AKKIGIKVGDKAGQVGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIRIV 201
            A K+GI VG+KAGQVGKV+KRLY+++YG EAG NIPKR TTFRGKPFSEN++++RD+DLIQ  IRIV
Sbjct:  425 AGKMGISVGEKAGQVGKVVKRLYSERYGQEAGRNIPKRSTTFRGKPFSENTYYARDSDLIQRGIRIV 491          
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 101 bits (252), Expect = 4.430e-24
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1
Query:    1 AKKIGIKVGDKAGQVGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIRIV 201
            A K+GI VG+K G++GK L R YTK+YG EAG NIPKR TT+RGKPF+EN +WSRDADL+QEAIRIV
Sbjct:  294 AAKLGICVGEKGGEIGKELIRRYTKRYGVEAGLNIPKRPTTYRGKPFNENCYWSRDADLVQEAIRIV 360          
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: A0A6H5JC19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC19_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.420e-22
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 AKKIGIKVGDKAGQVGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIRIV 201
            A K+G K+G+KAGQVGK+ K LY K++G  A ANIPKR T FRGKPFSEN+ W RDAD+IQEAIRIV
Sbjct:  295 AAKMGFKLGEKAGQVGKMAKSLYRKRHGVAAAANIPKRHTIFRGKPFSENTHWQRDADIIQEAIRIV 361          
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: D8LPL9_ECTSI (EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.220e-20
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 AKKIGIKVGDKAGQVGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIRIV 201
            A K+GI  G++AGQVGKV KRLY +KYG EA  +IP R TTFRGKPF E +++SRDADLIQ+AIRIV
Sbjct:  434 AAKLGISTGERAGQVGKVAKRLYGQKYGEEANRDIPTRHTTFRGKPFVERTYFSRDADLIQQAIRIV 500          
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: Q6XLT2_9PHYC (FirrV-1-P1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT2_9PHYC)

HSP 1 Score: 84.0 bits (206), Expect = 6.060e-20
Identity = 38/64 (59.38%), Postives = 53/64 (82.81%), Query Frame = 1
Query:   10 IGIKVGDKAGQVGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIRIV 201
            +GI +G+K+GQVGK +K LY+ +YG  A +NIPKR TTFRGKPF+EN+++ RD DL+++AIR V
Sbjct:    6 LGIALGEKSGQVGKKMKALYSSRYGTVAASNIPKRATTFRGKPFAENTYYIRDKDLMEQAIREV 69          
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: Q8QN80_ESV1K (EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN80_ESV1K)

HSP 1 Score: 90.1 bits (222), Expect = 1.530e-19
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 AKKIGIKVGDKAGQVGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIRIV 201
            A ++GI  G++AGQVGKV KRLY ++YG EA  +IP R TTFRGKPF E +++SRDADLIQ AIRIV
Sbjct:  434 AARLGISTGERAGQVGKVAKRLYGERYGEEANRDIPTRHTTFRGKPFVERTYFSRDADLIQRAIRIV 500          
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: A0A836CFR2_9STRA (KilA-N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.050e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 AKKIGIKVGDKAGQVGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIRIV 201
            A + G+++G++AG VGK ++ LY  KYG +A   IPKR T FRGKPFSEN+++ RD DLI  AIR V
Sbjct:  347 AAEAGVRIGERAGAVGKRIRALYRAKYGDDAAQGIPKRSTFFRGKPFSENTYFMRDKDLITTAIREV 413          
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: A0A6H5K200_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K200_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.320e-12
Identity = 41/94 (43.62%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   25 GDKAGQVGKVLKRL-----------------------------------YTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIRIV 201
            G+KAGQ GKV+KRL                                   Y+++YG EAG  IPKR TTFRGKPFS  ++++RD+DLIQ AIRIV
Sbjct:  402 GEKAGQTGKVVKRLPSVRGPETSICVEAGKMGSSVXXXXXXXXXXXXXXYSERYGQEAGRKIPKRSTTFRGKPFSGKTYYARDSDLIQRAIRIV 495          
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: A0A836CN02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN02_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.360e-12
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 AKKIGIKVGDKAGQ---VGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIRIV 201
            A ++G+++  KAG    +GK +K LY  KYG  A A IPKR   FRGK F+EN++W RD DL++EAIR V
Sbjct:   92 AAEMGVRI--KAGSECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIRTV 159          
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Match: A0A835Z1W0_9STRA (Uncharacterized protein n=8 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.310e-11
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 AKKIGIKVGDKAGQ---VGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSENSFWSRDADLIQEAIR 195
            A ++G+++  KAG    +GK +K LY  KYG  A A IPKR   FRGK F+EN++W RD DL++EAIR
Sbjct:  255 AAEMGVRI--KAGTECLIGKKVKALYAIKYGTAAAAAIPKRNVPFRGKVFAENTYWKRDQDLMEEAIR 320          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Q8QN79_ESV1K4.160e-2473.13EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K[more]
B5LWM4_9PHYC4.430e-2471.64Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JC19_9PHAE1.420e-2270.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPL9_ECTSI1.220e-2068.66EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q6XLT2_9PHYC6.060e-2059.38FirrV-1-P1 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q8QN80_ESV1K1.530e-1965.67EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A836CFR2_9STRA8.050e-1555.22KilA-N domain-containing protein n=1 Tax=Tribonema... [more]
A0A6H5K200_9PHAE1.320e-1243.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CN02_9STRA1.360e-1251.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1W0_9STRA3.310e-1151.47Uncharacterized protein n=8 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:490345..490545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue6.5e-17
Seed eggNOG ortholog2880.D8LPL9
EggNOG OGs2EUDG@1,2SWJG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817214.4399133-CDS-P-fluviatile_contig79:490344..4905451622817214.4399133-CDS-P-fluviatile_contig79:490344..490545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 490345..490545 +
1693571529.4940898-CDS-P-fluviatile_contig79:490344..4905451693571529.4940898-CDS-P-fluviatile_contig79:490344..490545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 490345..490545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14288.1prot_P-fluviatile_contig79.14288.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 490345..490545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14288.1

>prot_P-fluviatile_contig79.14288.1 ID=prot_P-fluviatile_contig79.14288.1|Name=mRNA_P-fluviatile_contig79.14288.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=67bp
AKKIGIKVGDKAGQVGKVLKRLYTKKYGAEAGANIPKRQTTFRGKPFSEN
SFWSRDADLIQEAIRIV
back to top

mRNA from alignment at P-fluviatile_contig79:490345..490545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14288.1 ID=mRNA_P-fluviatile_contig79.14288.1|Name=mRNA_P-fluviatile_contig79.14288.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=201bp|location=Sequence derived from alignment at P-fluviatile_contig79:490345..490545+ (Porterinema fluviatile SAG_2381)
GCAAAAAAAATAGGCATCAAAGTTGGCGACAAGGCAGGTCAGGTTGGCAA AGTGCTGAAGCGTCTCTACACAAAGAAATATGGCGCCGAAGCTGGAGCCA ACATTCCAAAGCGTCAAACTACCTTTCGGGGGAAGCCATTTTCCGAGAAC AGTTTTTGGTCGCGTGATGCGGATCTGATTCAAGAAGCTATTCGTATCGT T
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig79:490345..490545+

>mRNA_P-fluviatile_contig79.14288.1 ID=mRNA_P-fluviatile_contig79.14288.1|Name=mRNA_P-fluviatile_contig79.14288.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=402bp|location=Sequence derived from alignment at P-fluviatile_contig79:490345..490545+ (Porterinema fluviatile SAG_2381)
GCAAAAAAAATAGGCATCAAAGTTGGCGACAAGGCAGGTCAGGTTGGCAA
AGTGCTGAAGCGTCTCTACACAAAGAAATATGGCGCCGAAGCTGGAGCCA
ACATTCCAAAGCGTCAAACTACCTTTCGGGGGAAGCCATTTTCCGAGAAC
AGTTTTTGGTCGCGTGATGCGGATCTGATTCAAGAAGCTATTCGTATCGT
TGCAAAAAAAATAGGCATCAAAGTTGGCGACAAGGCAGGTCAGGTTGGCA
AAGTGCTGAAGCGTCTCTACACAAAGAAATATGGCGCCGAAGCTGGAGCC
AACATTCCAAAGCGTCAAACTACCTTTCGGGGGAAGCCATTTTCCGAGAA
CAGTTTTTGGTCGCGTGATGCGGATCTGATTCAAGAAGCTATTCGTATCG
TT
back to top