mRNA_P-fluviatile_contig79.14286.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14286.1
Unique NamemRNA_P-fluviatile_contig79.14286.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig79.14286.1 vs. uniprot
Match: A0A1B7VCZ1_9NOST (Uncharacterized protein (Fragment) n=1 Tax=Anabaena sp. LE011-02 TaxID=1710892 RepID=A0A1B7VCZ1_9NOST)

HSP 1 Score: 51.2 bits (121), Expect = 3.960e-7
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:   31 EKSLGQDHPYVATILNNRTLLLSDQRKYKEAIPLLERALSIRTEKFGANHP 183
            +K LG DHP VA+ LNN   L   Q KY EA PL ++AL+I  ++ G +HP
Sbjct:    2 QKLLGDDHPDVASSLNNLAGLYYSQGKYNEAEPLYQQALNIFEQRLGVDHP 52
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BLAST of mRNA_P-fluviatile_contig79.14286.1 vs. uniprot
Match: A0A3E0M3F9_MICAE (Tetratricopeptide repeat-containing protein n=2 Tax=Microcystis TaxID=1125 RepID=A0A3E0M3F9_MICAE)

HSP 1 Score: 51.2 bits (121), Expect = 9.510e-7
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    7 YKRTQAIFEKSLGQDHPYVATILNNRTLLLSDQRKYKEAIPLLERALSIRTEKFGANHP 183
            Y+ T  + ++ LG +HP VAT LNN   L   Q +Y EA PL   A++I T+  G NHP
Sbjct:    8 YRVTLDLRKRLLGDNHPSVATSLNNLAHLYYSQVRYSEAEPLYLEAINIATQALGENHP 66
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BLAST of mRNA_P-fluviatile_contig79.14286.1 vs. uniprot
Match: A0A432EWE7_9AQUI (Uncharacterized protein n=1 Tax=Aquificaceae bacterium TaxID=2053503 RepID=A0A432EWE7_9AQUI)

HSP 1 Score: 48.9 bits (115), Expect = 2.520e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   70 ILNNRTLLLSDQRKYKEAIPLLERALSIRTEKFGANHPD 186
            + NN  LL SDQ+KYKEAIPL ER+L+I   KF   HP+
Sbjct:    2 MFNNLALLYSDQKKYKEAIPLFERSLAILKTKFPNGHPN 40
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BLAST of mRNA_P-fluviatile_contig79.14286.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.950e-6
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 PLYKRTQAIFEKSLGQDHPYVATILNNRTLLLSDQ 105
            PLY+R QAI+EK LG +HPYVAT LNNR  LL  Q
Sbjct:  948 PLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
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BLAST of mRNA_P-fluviatile_contig79.14286.1 vs. uniprot
Match: UPI00168570C4 (Tetratricopeptide repeat protein n=1 Tax=Nostoc sp. FACHB-892 TaxID=2692843 RepID=UPI00168570C4)

HSP 1 Score: 48.9 bits (115), Expect = 1.150e-5
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   25 IFEKSLGQDHPYVATILNNRTLLLSDQRKYKEAIPLLERALSIRTEKFGANHPD 186
            +F++ +G++HP VAT LNN   L   Q    EA PL  +AL I   + G NHP+
Sbjct:   61 VFQREVGEEHPDVATSLNNLASLYKSQGGCSEAEPLYIQALDILERRLGVNHPN 114
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BLAST of mRNA_P-fluviatile_contig79.14286.1 vs. uniprot
Match: A0A3E0ME31_MICAE (Tetratricopeptide repeat-containing protein (Fragment) n=2 Tax=Microcystis TaxID=1125 RepID=A0A3E0ME31_MICAE)

HSP 1 Score: 46.6 bits (109), Expect = 2.470e-5
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:   31 EKSLGQDHPYVATILNNRTLLLSDQRKYKEAIPLLERALSIRTEKFGANHP 183
            ++ LG +HP VA+ LNN   L   Q +YKEA PL  +AL+I  +    NHP
Sbjct:    1 KRLLGDNHPDVASSLNNLASLYESQGRYKEAEPLFLQALAIAEQALEENHP 51
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BLAST of mRNA_P-fluviatile_contig79.14286.1 vs. uniprot
Match: A0A551ZBE2_9CHRO (Tetratricopeptide repeat protein n=1 Tax=Microcystis sp. M_QC_C_20170808_M9Col TaxID=2486217 RepID=A0A551ZBE2_9CHRO)

HSP 1 Score: 46.2 bits (108), Expect = 5.000e-5
Identity = 25/59 (42.37%), Postives = 33/59 (55.93%), Query Frame = 1 
Query:    7 YKRTQAIFEKSLGQDHPYVATILNNRTLLLSDQRKYKEAIPLLERALSIRTEKFGANHP 183
            Y+ T  + ++ LG +HP VAT LNN   L   Q +Y EA P    A++I  E  G NHP
Sbjct:    8 YRVTLDLRKRLLGDNHPDVATSLNNLVHLCYCQGRYSEAEPFYLEAINIFREGLGENHP 66
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BLAST of mRNA_P-fluviatile_contig79.14286.1 vs. uniprot
Match: A0A6H5KDX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX1_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 8.090e-5
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 PLYKRTQAIFEKSLGQDHPYVATILNNRTLLLSDQ 105
            PL+K+TQAI+EK LG +HP+VA  LNN  + L DQ
Sbjct:  167 PLFKQTQAIYEKVLGPEHPHVAQSLNNPAVFLEDQ 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A1B7VCZ1_9NOST3.960e-749.02Uncharacterized protein (Fragment) n=1 Tax=Anabaen... [more]
A0A3E0M3F9_MICAE9.510e-744.07Tetratricopeptide repeat-containing protein n=2 Ta... [more]
A0A432EWE7_9AQUI2.520e-658.97Uncharacterized protein n=1 Tax=Aquificaceae bacte... [more]
A0A6H5JJK0_9PHAE4.950e-668.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00168570C41.150e-542.59Tetratricopeptide repeat protein n=1 Tax=Nostoc sp... [more]
A0A3E0ME31_MICAE2.470e-545.10Tetratricopeptide repeat-containing protein (Fragm... [more]
A0A551ZBE2_9CHRO5.000e-542.37Tetratricopeptide repeat protein n=1 Tax=Microcyst... [more]
A0A6H5KDX1_9PHAE8.090e-560.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:482527..483308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817214.3637638-CDS-P-fluviatile_contig79:482526..4826311622817214.3637638-CDS-P-fluviatile_contig79:482526..482631Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 482527..482631 +
1693571529.4634814-CDS-P-fluviatile_contig79:482526..4826311693571529.4634814-CDS-P-fluviatile_contig79:482526..482631Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 482527..482631 +
1622817214.3738122-CDS-P-fluviatile_contig79:483227..4833081622817214.3738122-CDS-P-fluviatile_contig79:483227..483308Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 483228..483308 +
1693571529.4731245-CDS-P-fluviatile_contig79:483227..4833081693571529.4731245-CDS-P-fluviatile_contig79:483227..483308Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 483228..483308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14286.1prot_P-fluviatile_contig79.14286.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 482527..483308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14286.1

>prot_P-fluviatile_contig79.14286.1 ID=prot_P-fluviatile_contig79.14286.1|Name=mRNA_P-fluviatile_contig79.14286.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=62bp
PLYKRTQAIFEKSLGQDHPYVATILNNRTLLLSDQRKYKEAIPLLERALS
IRTEKFGANHPD
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mRNA from alignment at P-fluviatile_contig79:482527..483308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14286.1 ID=mRNA_P-fluviatile_contig79.14286.1|Name=mRNA_P-fluviatile_contig79.14286.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=782bp|location=Sequence derived from alignment at P-fluviatile_contig79:482527..483308+ (Porterinema fluviatile SAG_2381)
CCGTTGTACAAGAGAACGCAGGCGATCTTTGAGAAATCGTTGGGGCAGGA
TCATCCCTACGTCGCCACAATTCTCAACAACCGGACGCTGTTGTTGAGTG
ACCAGGTGAGAGCCGTGAGATGTGTGTGGCATCGTTCTTGTGGTCTGGAA
TAGTCGGAGCAAAAGTTCCCAGAATATCCTTGTGGTGGGAAGTCATTGCT
CTACAACAGGGCGCCTTTTGTTGCATGTGCAGGTGAGAGCCGTCATGATT
TTGTGGGAAGACTCTTGTGGGCAGTGGGAGTGAATGTCAATTTCGATAGA
CTTCCTAAGGTGGCTAGTAGGTGCTTAACAATAGGGTGTGGGTTGTTGAA
GTGCCAGGTGAGATCCACCAGAATTTCCACGAAATTTCATAAGGTCCACT
TTGGTCGGTGAACCGTTGGAGTTTGGTGGATGGCCTCCTCACAAATATCC
ACTGATTGCAATGTAGGGCAAGTAAGCTGAGGCCGAGCCAGACACTATGA
GAGCTCACAGGCTATGAGAGTCGAAGAGTTTTATTGGAATTTCGTAGGGT
CCATAATTTTGCGGAATATTCGGTTGTTGGTGGAGCACTATACTAGTGTA
TCCAAACCCCTGCTACCTGGCATTTTCGCCGGGTCTTGTTCACATATGCG
CTTTTGATACCTGGATTCATCTTGTTAACCTTGCCTCTCAAACGCCAACA
GAGAAAGTACAAGGAGGCAATTCCACTACTCGAAAGGGCCCTCTCGATCC
GTACGGAGAAGTTCGGGGCAAACCACCCAGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig79:482527..483308+

>mRNA_P-fluviatile_contig79.14286.1 ID=mRNA_P-fluviatile_contig79.14286.1|Name=mRNA_P-fluviatile_contig79.14286.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=372bp|location=Sequence derived from alignment at P-fluviatile_contig79:482527..483308+ (Porterinema fluviatile SAG_2381)
CCGTTGTACAAGAGAACGCAGGCGATCTTTGAGAAATCGTTGGGGCAGGA
TCATCCCTACGTCGCCACAATTCTCAACAACCGGACGCTGTTGTTGAGTG
ACCAGCCGTTGTACAAGAGAACGCAGGCGATCTTTGAGAAATCGTTGGGG
CAGGATCATCCCTACGTCGCCACAATTCTCAACAACCGGACGCTGTTGTT
GAGTGACCAGAGAAAGTACAAGGAGGCAATTCCACTACTCGAAAGGGCCC
TCTCGATCCGTACGGAGAAGTTCGGGGCAAACCACCCAGACAGAAAGTAC
AAGGAGGCAATTCCACTACTCGAAAGGGCCCTCTCGATCCGTACGGAGAA
GTTCGGGGCAAACCACCCAGAC
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