mRNA_P-fluviatile_contig79.14285.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14285.1
Unique NamemRNA_P-fluviatile_contig79.14285.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.000e-39
Identity = 85/166 (51.20%), Postives = 108/166 (65.06%), Query Frame = 1
Query:   13 IQRLTAWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEANTVADDCGRLALALAIVGSLPSIRKSPDGAEGWRDLHLEIMEKKRQRRGLRMATESNQDKSKSALFPVLGLSMDQLGEDAQNL 510
            IQ LT    +D LP LVVLDDVWE  VVD LR TGL+LLVTTR+  VVA  GG T +G+M   EAR+LL+ +SGA+ LP+ EA+ VA  CG  AL LAI GSL  ++  P+ A  WR L  E+ + K   RG +M  +   D +K +LFPVL LS++ LG D + L
Sbjct:  328 IQYLTVLVAEDKLPRLVVLDDVWERAVVDTLRPTGLRLLVTTRLDSVVAMRGGRTTVGNMDGGEARELLKSRSGAIALPKTEADQVAAACGWHALTLAIAGSLRFVKDDPNSASTWRRLASEMTQTKNSVRGPKMDADIGDDPTKKSLFPVLELSLESLGGDRERL 493          
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: A0A6H5JSG2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG2_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 3.150e-39
Identity = 85/160 (53.12%), Postives = 111/160 (69.38%), Query Frame = 1
Query:   28 AWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEANTVADDCGRLALALAIVGSLPSIRKSPDGAEGWRDLHLEIMEKKRQRRGLRMATESNQDKSKSALFPVLGLSMDQLGEDAQN 507
            A AR + +P L++LDDVW  +VV+ALR TGL+++VTTR+  V    G    +GDM   EAR+LLRK+SGAV LP  EAN VA DCG   L LAI GSL  +R++PD A  WR+LH EI   KR RRGL+M T+S+++ S+S LFPVL LS ++L    Q+
Sbjct:  313 AVARDNSVPRLLILDDVWHEEVVNALRPTGLQIVVTTRLASV----GRGMIVGDMEDGEARELLRKKSGAVALPAPEANQVARDCGCHPLTLAIAGSLRCVREAPDSALAWRELHSEIGRIKRSRRGLQMTTDSDEEPSQSPLFPVLRLSFERLRVQEQD 468          
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: D7G7W8_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W8_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 6.440e-39
Identity = 85/160 (53.12%), Postives = 110/160 (68.75%), Query Frame = 1
Query:   28 AWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEANTVADDCGRLALALAIVGSLPSIRKSPDGAEGWRDLHLEIMEKKRQRRGLRMATESNQDKSKSALFPVLGLSMDQLGEDAQN 507
            A AR + +P L+VLDDVW  +V+DALR TGL++LVTTR+  V    G    +GDM + EAR+LL K+SGAV LP  EAN VA DCG   L L I GSL  +R++PD A  WR+LH EI   KR  RGL MAT+S+++ S+S+LFPVL LS ++L    Q+
Sbjct:  313 AVARDNSVPRLLVLDDVWHEEVMDALRPTGLQILVTTRLASV----GRGMLVGDMEEGEARELLSKKSGAVALPVPEANQVARDCGCHPLTLVIAGSLRCVREAPDSALAWRELHSEIERIKRSSRGLEMATDSDEEPSQSSLFPVLSLSFERLKVQEQD 468          
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.150e-22
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   13 IQRLTAWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEANTV 270
            IQ LT    +D LP LVVLDDVWE  VVD LR TGL+LLVTTR+  VVA  GG T +G+M   EAR+LL+ +SGA+ LPE EA+ V
Sbjct:  325 IQHLTVLVAEDKLPRLVVLDDVWERAVVDILRPTGLRLLVTTRLDSVVAVRGGRTVVGNMATGEARELLKSKSGAITLPETEADQV 410          
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 8.210e-21
Identity = 62/137 (45.26%), Postives = 78/137 (56.93%), Query Frame = 1
Query:   16 QRLTAWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEANT----VADDCGRLALALAIVGSLPSIRKSPDGAEGWRDL--HLEIMEKKRQRRG 408
            Q L A A     P LVVLDDVWE +VVDA    G K+L+TTR   VV    G  ++GDMT+ EA +LLRK SGAV  P  +  T    V   CG L L LAI GS+  ++     A  W++L  +LE + KK + RG
Sbjct:  321 QHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENLENVAKKMRARG 457          
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.430e-19
Identity = 62/137 (45.26%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   16 QRLTAWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEANT----VADDCGRLALALAIVGSLPSIRKSPDGAEGWRDL--HLEIMEKKRQRRG 408
            Q L A A     P LVVLDDVWE +VVDA    G K+L+TTR   VV    G  ++GDMT+ EA +LLRK SG V  P  +  T    V   CG L L LAI GS+  +R     A  W +L   LE + KK + RG
Sbjct:  375 QHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARG 511          
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.650e-19
Identity = 70/169 (41.42%), Postives = 85/169 (50.30%), Query Frame = 1
Query:   16 QRLTAWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEANT----VADDCGRLALALAIVGSLPSIRKSPDGAEGWRDL--HLEIMEKKRQRRGLRMATESNQDKSKSALFPVLGLSMDQLGEDAQ 504
            Q L   A     P LVVLDDVWE +VVDAL   GLK+LVTTR   VV   GG  ++GDMT+ EA +LL K S  V  P  E  T    V   CG L L LAI GS+  ++     A  W +L    E + KK + RG          +  S++  VLG S D L    Q
Sbjct:  116 QHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLPLVLAIAGSMSVVKGKGLTAVAWEELIKEFENVAKKMRVRG----------EQSSSIKVVLGTSFDALAARKQ 274          
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.540e-19
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   13 IQRLTAWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEAN 264
            IQ LT    +D LP L+VLDDV E  VVD LR TGL+LLVTTR+  +VA  GG T +G+M + EAR+LL+ +SGA+ LPE EA+
Sbjct:  283 IQHLTVVVAEDRLPRLMVLDDVLERAVVDTLRPTGLRLLVTTRLDSLVAVRGGRTVVGNMDRAEARELLKSKSGAIELPETEAD 366          
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.870e-19
Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   13 IQRLTAWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLP----EAEANTVADDCGRLALALAIVGSLPSIRKS--PDGAEGWRDL 369
            +Q L A   +   P LVVLDDVWE +VV A    GLK+LVTTR   +V   GG  ++GDM + EA +LL K SG V  P      +   V D CGRL L LAI GS+P ++     DGA  W +L
Sbjct:  351 MQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLLELGDMAEDEALELLWKTSGTVGQPGDGVRTQMTKVVDRCGRLPLVLAIAGSMPVVKGKGLKDGA--WEEL 473          
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.350e-18
Identity = 60/137 (43.80%), Postives = 74/137 (54.01%), Query Frame = 1
Query:   16 QRLTAWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGDVVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEANT----VADDCGRLALALAIVGSLPSIRKSPDGAEGWRDL--HLEIMEKKRQRRG 408
            Q L A         LVVLDDVWE +VVDA    G K+L+TTR   VV    G  ++GD+T+ EA +LLRK SGAV  P  +  T    V   CG L L LAI GS+  +R     A  W +L   LE + KK + RG
Sbjct:  358 QHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARG 494          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJK0_9PHAE1.000e-3951.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSG2_9PHAE3.150e-3953.13AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G7W8_ECTSI6.440e-3953.13NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5KK53_9PHAE4.150e-2260.47NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KXS7_9PHAE8.210e-2145.26NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI1.430e-1945.26NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5LJA6_9PHAE1.650e-1941.42NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5J6Q8_9PHAE4.540e-1957.14NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LPV9_ECTSI4.870e-1945.60NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D7G720_ECTSI4.350e-1843.80NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:472397..473087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue1e-34
Seed eggNOG ortholog2880.D7G7W8
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size514
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817214.3226476-CDS-P-fluviatile_contig79:472396..4726631622817214.3226476-CDS-P-fluviatile_contig79:472396..472663Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 472397..472663 +
1693571529.4415889-CDS-P-fluviatile_contig79:472396..4726631693571529.4415889-CDS-P-fluviatile_contig79:472396..472663Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 472397..472663 +
1622817214.335552-CDS-P-fluviatile_contig79:472842..4730851622817214.335552-CDS-P-fluviatile_contig79:472842..473085Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 472843..473085 +
1693571529.4538097-CDS-P-fluviatile_contig79:472842..4730851693571529.4538097-CDS-P-fluviatile_contig79:472842..473085Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 472843..473085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14285.1prot_P-fluviatile_contig79.14285.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 472397..473085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14285.1

>prot_P-fluviatile_contig79.14285.1 ID=prot_P-fluviatile_contig79.14285.1|Name=mRNA_P-fluviatile_contig79.14285.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=170bp
EDAGIQRLTAWARKDPLPLLVVLDDVWESDVVDALRYTGLKLLVTTRVGD
VVAAEGGHTDIGDMTKPEARDLLRKQSGAVNLPEAEANTVADDCGRLALA
LAIVGSLPSIRKSPDGAEGWRDLHLEIMEKKRQRRGLRMATESNQDKSKS
ALFPVLGLSMDQLGEDAQNL
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mRNA from alignment at P-fluviatile_contig79:472397..473087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14285.1 ID=mRNA_P-fluviatile_contig79.14285.1|Name=mRNA_P-fluviatile_contig79.14285.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=691bp|location=Sequence derived from alignment at P-fluviatile_contig79:472397..473087+ (Porterinema fluviatile SAG_2381)
GAGGACGCCGGCATCCAGCGCTTGACTGCGTGGGCCAGGAAGGACCCCCT GCCTCTGCTAGTGGTTCTGGACGACGTGTGGGAGTCCGACGTTGTGGACG CTTTGCGGTACACGGGGCTGAAGCTGCTGGTTACGACGCGCGTTGGTGAT GTGGTAGCCGCGGAAGGCGGTCATACGGATATCGGAGACATGACCAAACC GGAGGCCCGTGATTTGCTCCGGAAGCAAAGCGGTGCAGTGAATCTCCCGG AGGCAGAGGCCAACACGGTAAGTGCGATACGTCGTATGCATCCAGCAGGG AGGACACAATCAAAGGTGCCGTTTGAATGTTTCCGTAGAGAGCGCCCTAT CCTTCATCTCATGTAAATCGCTCACAGACCTTCTGTCCGGTGTTGGGTCT CACGTTGTTTGCTGTGCTCACCCCCGTCTTATTCTTCACCGTCTAGGTTG CTGACGACTGCGGCCGGCTTGCGCTGGCCCTGGCGATTGTAGGATCGTTG CCCAGCATCAGAAAGAGTCCAGATGGCGCGGAAGGTTGGCGCGACCTGCA TTTGGAGATCATGGAGAAGAAACGGCAGCGCCGAGGCCTGCGGATGGCCA CTGAAAGCAACCAGGACAAGTCAAAGTCGGCACTTTTCCCTGTTCTGGGC TTGAGCATGGATCAGCTCGGTGAAGATGCGCAGAATTTGTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig79:472397..473087+

>mRNA_P-fluviatile_contig79.14285.1 ID=mRNA_P-fluviatile_contig79.14285.1|Name=mRNA_P-fluviatile_contig79.14285.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1020bp|location=Sequence derived from alignment at P-fluviatile_contig79:472397..473087+ (Porterinema fluviatile SAG_2381)
GAGGACGCCGGCATCCAGCGCTTGACTGCGTGGGCCAGGAAGGACCCCCT
GCCTCTGCTAGTGGTTCTGGACGACGTGTGGGAGTCCGACGTTGTGGACG
CTTTGCGGTACACGGGGCTGAAGCTGCTGGTTACGACGCGCGTTGGTGAT
GTGGTAGCCGCGGAAGGCGGTCATACGGATATCGGAGACATGACCAAACC
GGAGGCCCGTGATTTGCTCCGGAAGCAAAGCGGTGCAGTGAATCTCCCGG
AGGCAGAGGCCAACACGGAGGACGCCGGCATCCAGCGCTTGACTGCGTGG
GCCAGGAAGGACCCCCTGCCTCTGCTAGTGGTTCTGGACGACGTGTGGGA
GTCCGACGTTGTGGACGCTTTGCGGTACACGGGGCTGAAGCTGCTGGTTA
CGACGCGCGTTGGTGATGTGGTAGCCGCGGAAGGCGGTCATACGGATATC
GGAGACATGACCAAACCGGAGGCCCGTGATTTGCTCCGGAAGCAAAGCGG
TGCAGTGAATCTCCCGGAGGCAGAGGCCAACACGGTTGCTGACGACTGCG
GCCGGCTTGCGCTGGCCCTGGCGATTGTAGGATCGTTGCCCAGCATCAGA
AAGAGTCCAGATGGCGCGGAAGGTTGGCGCGACCTGCATTTGGAGATCAT
GGAGAAGAAACGGCAGCGCCGAGGCCTGCGGATGGCCACTGAAAGCAACC
AGGACAAGTCAAAGTCGGCACTTTTCCCTGTTCTGGGCTTGAGCATGGAT
CAGCTCGGTGAAGATGCGCAGAATTTGGTTGCTGACGACTGCGGCCGGCT
TGCGCTGGCCCTGGCGATTGTAGGATCGTTGCCCAGCATCAGAAAGAGTC
CAGATGGCGCGGAAGGTTGGCGCGACCTGCATTTGGAGATCATGGAGAAG
AAACGGCAGCGCCGAGGCCTGCGGATGGCCACTGAAAGCAACCAGGACAA
GTCAAAGTCGGCACTTTTCCCTGTTCTGGGCTTGAGCATGGATCAGCTCG
GTGAAGATGCGCAGAATTTG
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