mRNA_P-fluviatile_contig79.14281.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14281.1
Unique NamemRNA_P-fluviatile_contig79.14281.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.800e-22
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:   86 LKAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDVV 220
            LK EFA GGGICRSTAH WIA+LGFRWRRHGKCVYVDGHNRPDVV
Sbjct:  110 LKEEFAGGGGICRSTAHVWIAQLGFRWRRHGKCVYVDGHNRPDVV 154
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 5.810e-22
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:   86 LKAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDVV 220
            LK EFA GGGICRSTAH WIA+LGFRWRRHGKCVYVDGHNRPDVV
Sbjct:  564 LKEEFAGGGGICRSTAHVWIAQLGFRWRRHGKCVYVDGHNRPDVV 608
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-19
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 2 
Query:   86 LKAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDVV 220
            L+ EF +GGGI RSTAH WI++LGFRWRRHGKCVYVDGHNRPDVV
Sbjct:  524 LEEEFKDGGGISRSTAHHWISQLGFRWRRHGKCVYVDGHNRPDVV 568
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5K230_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K230_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.550e-18
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:   83 VLKAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDVV 220
            +LK  F+ GGGI R+TAHSWI +LGFRW++ GKCVYVDGHNRPDVV
Sbjct:   41 LLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVV 86
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5L7Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.610e-18
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:   83 VLKAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDV 217
            +LK  F+ GGGI R+TAHSWI +LGFRW++ GKCVYVDGHNRPDV
Sbjct:  118 LLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDV 162
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5L796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L796_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.980e-18
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:   83 VLKAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDVV 220
            +LK  F+ GGGI R+TAHSWI +LGFRW++ GKCVYVDGHNRPDVV
Sbjct:   87 LLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVV 132
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5J7G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7G3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.670e-17
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:   83 VLKAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDVV 220
            +LK  F+ GGGI R+TAHSWI +LGFRW++ GKCVYVDGHNRPDVV
Sbjct:  584 LLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVV 629
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5JR89_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR89_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.680e-17
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:   83 VLKAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDVV 220
            +LK  F+ GGGI R+TAHSWI +LGFRW++ GKCVYVDGHNRPDVV
Sbjct:  478 LLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVV 523
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5KT94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT94_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 6.980e-16
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2 
Query:   89 KAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDVV 220
            K  F+ GGGI R+TAHSWI +LGFRW++ GKCVYVDGHNRPD V
Sbjct:  508 KEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDFV 551
[Close]
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Match: A0A6H5JXP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXP8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.350e-15
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 2 
Query:   83 VLKAEFAEGGGICRSTAHSWIAKLGFRWRRHGKCVYVDGHNRPDVV 220
            +LK  F+ GGG  R+TAHSW+ +LGFRW++ G CVYVDGHNRPDVV
Sbjct:  537 LLKEVFSGGGGNYRTTAHSWMCRLGFRWKKSGTCVYVDGHNRPDVV 582
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K659_9PHAE5.800e-2291.11Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K527_9PHAE5.810e-2291.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ42_9PHAE1.160e-1982.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K230_9PHAE2.550e-1873.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Z5_9PHAE3.610e-1873.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L796_9PHAE9.980e-1873.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7G3_9PHAE1.670e-1773.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR89_9PHAE1.680e-1773.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KT94_9PHAE6.980e-1672.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXP8_9PHAE3.350e-1567.39Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:450809..451200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817209.2980568-CDS-P-fluviatile_contig79:450808..4509631622817209.2980568-CDS-P-fluviatile_contig79:450808..450963Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 450809..450963 -
1693571518.2319398-CDS-P-fluviatile_contig79:450808..4509631693571518.2319398-CDS-P-fluviatile_contig79:450808..450963Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 450809..450963 -
1622817209.3106725-CDS-P-fluviatile_contig79:451133..4512001622817209.3106725-CDS-P-fluviatile_contig79:451133..451200Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 451134..451200 -
1693571518.2417347-CDS-P-fluviatile_contig79:451133..4512001693571518.2417347-CDS-P-fluviatile_contig79:451133..451200Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 451134..451200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14281.1prot_P-fluviatile_contig79.14281.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 450809..451200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14281.1

>prot_P-fluviatile_contig79.14281.1 ID=prot_P-fluviatile_contig79.14281.1|Name=mRNA_P-fluviatile_contig79.14281.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=74bp
TSISGFTVGRRGNAAFASPTFRGGSTQSPQGGVRRRWRHLSQHSAQLDRQ
TRIQVATTRQVRVRRRTQPTGRCR
back to top

mRNA from alignment at P-fluviatile_contig79:450809..451200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14281.1 ID=mRNA_P-fluviatile_contig79.14281.1|Name=mRNA_P-fluviatile_contig79.14281.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=392bp|location=Sequence derived from alignment at P-fluviatile_contig79:450809..451200- (Porterinema fluviatile SAG_2381)
ACATCGATCAGCGGATTTACCGTCGGAAGAAGGGGGAACGCCGCTTTCGC
GTCGCCGACTTTCAGAGGTGAATTTTCGCAACCGAGGAAGCGAAGTATGC
AAGTTTGGGTTGGTCCGGTCTCTGCGCCCCTCGCCTCTCTCTATCCATAG
GAATATGTATGCACCATCGCGGGAAAATTGTCACGGCCCTCGTGCCCCTT
AAAGCAACCCTTCCCTCGTATTGGTGCTGCGCGCCAGGTGGGTCAACACA
GAGTCCTCAAGGCGGAGTTCGCCGAAGGTGGAGGCATTTGTCGCAGCACA
GCGCACAGCTGGATCGCCAAACTCGGATTCAGGTGGCGACGACACGGCAA
GTGCGTGTACGTCGACGGACACAACCGACCGGACGTTGTCGA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig79:450809..451200-

>mRNA_P-fluviatile_contig79.14281.1 ID=mRNA_P-fluviatile_contig79.14281.1|Name=mRNA_P-fluviatile_contig79.14281.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=444bp|location=Sequence derived from alignment at P-fluviatile_contig79:450809..451200- (Porterinema fluviatile SAG_2381)
ACATCGATCAGCGGATTTACCGTCGGAAGAAGGGGGAACGCCGCTTTCGC
GTCGCCGACTTTCAGAGACATCGATCAGCGGATTTACCGTCGGAAGAAGG
GGGAACGCCGCTTTCGCGTCGCCGACTTTCAGAGGTGGGTCAACACAGAG
TCCTCAAGGCGGAGTTCGCCGAAGGTGGAGGCATTTGTCGCAGCACAGCG
CACAGCTGGATCGCCAAACTCGGATTCAGGTGGCGACGACACGGCAAGTG
CGTGTACGTCGACGGACACAACCGACCGGACGTTGTCGAGTGGGTCAACA
CAGAGTCCTCAAGGCGGAGTTCGCCGAAGGTGGAGGCATTTGTCGCAGCA
CAGCGCACAGCTGGATCGCCAAACTCGGATTCAGGTGGCGACGACACGGC
AAGTGCGTGTACGTCGACGGACACAACCGACCGGACGTTGTCGA
back to top