mRNA_P-fluviatile_contig79.14280.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14280.1
Unique NamemRNA_P-fluviatile_contig79.14280.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig79.14280.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.390e-37
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    1 YTEKMLAMRRLMSIPEKVETVVVVKVRDAGDREEASTDDG-DDHVTEEVAIGKEPVLWPAVRTMPGGRVDCKHVLVFGDRFSEATGDERCCTRIPIDEGALQL 306
            YTEKM  MRRLMSIPEKVETVV+VKVRDA DRE+ STDD  DD++T  VA   EPVLWPAVRTMP G VD KHVLV+GD+F+EATG +RCCTR+ +D G L++
Sbjct:  160 YTEKMFVMRRLMSIPEKVETVVMVKVRDARDREKTSTDDRRDDNITAAVACA-EPVLWPAVRTMPDGGVDFKHVLVYGDKFTEATGHDRCCTRVSVDAGDLEM 261
[Close]
BLAST of mRNA_P-fluviatile_contig79.14280.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.450e-37
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    1 YTEKMLAMRRLMSIPEKVETVVVVKVRDAGDREEASTDDG-DDHVTEEVAIGKEPVLWPAVRTMPGGRVDCKHVLVFGDRFSEATGDERCCTRIPIDEGALQL 306
            YTEKM  MRRLMSIPEKVETVV+VKVRDA DRE+ STDD  DD++T  VA   EPVLWPAVRTMP G VD KHVLV+GD+F+EATG +RCCTR+ +D G L++
Sbjct:  614 YTEKMFVMRRLMSIPEKVETVVMVKVRDARDREKTSTDDRRDDNITAAVACA-EPVLWPAVRTMPDGGVDFKHVLVYGDKFTEATGHDRCCTRVSVDAGDLEM 715
[Close]
BLAST of mRNA_P-fluviatile_contig79.14280.1 vs. uniprot
Match: A0A6H5KDG4_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.530e-37
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    1 YTEKMLAMRRLMSIPEKVETVVVVKVRDAGDREEASTDDG-DDHVTEEVAIGKEPVLWPAVRTMPGGRVDCKHVLVFGDRFSEATGDERCCTRIPIDEGALQL 306
            YTEKM  MRRLMSIPEKVETVV+VKVRDA DRE+ STDD  DD++T  VA   EPVLWPAVRTMP G VD KHVLV+GD+F+EATG +RCCTR+ +D G L++
Sbjct:  647 YTEKMFVMRRLMSIPEKVETVVMVKVRDARDREKTSTDDRRDDNITAAVACA-EPVLWPAVRTMPDGGVDFKHVLVYGDKFTEATGHDRCCTRVSVDAGDLEM 748
[Close]
BLAST of mRNA_P-fluviatile_contig79.14280.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.410e-31
Identity = 65/102 (63.73%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:    1 YTEKMLAMRRLMSIPEKVETVVVVKVRDAGDREEASTDDGDDHVTEEVAIGKEPVLWPAVRTMPGGRVDCKHVLVFGDRFSEATGDERCCTRIPIDEGALQL 306
            YTEKM  MRR++SIPEKVETVV+VKVRDA + EE++  D D  +T  +A GKEPVLWP VR MP GRVD KHVLV+G++F+EATGD+ C TR+ IDE  L++
Sbjct:  574 YTEKMFVMRRIISIPEKVETVVMVKVRDAEEGEESAMGDSDGSITG-LAAGKEPVLWPVVRKMPDGRVDSKHVLVYGNQFTEATGDDDC-TRVCIDEDQLKM 673
[Close]
BLAST of mRNA_P-fluviatile_contig79.14280.1 vs. uniprot
Match: A0A6H5JH07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH07_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.120e-6
Identity = 37/108 (34.26%), Postives = 52/108 (48.15%), Query Frame = 1 
Query:   22 MRRLMSIPEKVETVVVVKVRDAGDREEASTDDGD-----------------DHVTEEVAIGKEPVLWPAVRTMPGGRVDCKHVLVFGD--RFSEATGDERCCTRIPID 288
            +R+ MSIP +VE  V+        R+E ++DD D                 +H T     G+EP+ WPAVRT+ G + +  HV V+GD        GD   CTR+P D
Sbjct:  506 LRQKMSIPLRVEETVMTATSRGEARQEGASDDSDVSGDERGGGARSETGDNEHPTGAATTGREPLFWPAVRTVDGNK-EYTHVRVYGDGETTKRVEGD---CTRVPFD 609
[Close]
BLAST of mRNA_P-fluviatile_contig79.14280.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.140e-6
Identity = 37/108 (34.26%), Postives = 52/108 (48.15%), Query Frame = 1 
Query:   22 MRRLMSIPEKVETVVVVKVRDAGDREEASTDDGD-----------------DHVTEEVAIGKEPVLWPAVRTMPGGRVDCKHVLVFGD--RFSEATGDERCCTRIPID 288
            +R+ MSIP +VE  V+        R+E ++DD D                 +H T     G+EP+ WPAVRT+ G + +  HV V+GD        GD   CTR+P D
Sbjct:  189 LRQKMSIPLRVEETVMTATSRGEARQEGASDDSDVSGDERGGGARSETGDNEHPTGAATTGREPLFWPAVRTVDGNK-EYTHVRVYGDGETTKRVEGD---CTRVPFD 292
[Close]
BLAST of mRNA_P-fluviatile_contig79.14280.1 vs. uniprot
Match: A0A6H5JRU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.240e-5
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = 2 
Query:  293 GHYSLVPAREVQKCYQAKRVEEEALFW 373
            GHY+LVP REVQ+CY+A+RV+EEALFW
Sbjct:    6 GHYTLVPDREVQECYKAERVKEEALFW 32
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K659_9PHAE5.390e-3770.87Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K527_9PHAE5.450e-3770.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDG4_9PHAE5.530e-3770.87Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ42_9PHAE6.410e-3163.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH07_9PHAE2.120e-634.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K550_9PHAE2.140e-634.26Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU6_9PHAE3.240e-577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:449924..450795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size374
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14280.1prot_P-fluviatile_contig79.14280.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 449977..450783 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817209.232021-UTR-P-fluviatile_contig79:449923..4499761622817209.232021-UTR-P-fluviatile_contig79:449923..449976Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 449924..449976 -
1693571518.185486-UTR-P-fluviatile_contig79:449923..4499761693571518.185486-UTR-P-fluviatile_contig79:449923..449976Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 449924..449976 -
1622817209.2668226-UTR-P-fluviatile_contig79:450783..4507951622817209.2668226-UTR-P-fluviatile_contig79:450783..450795Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 450784..450795 -
1693571518.2196136-UTR-P-fluviatile_contig79:450783..4507951693571518.2196136-UTR-P-fluviatile_contig79:450783..450795Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 450784..450795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817209.245295-CDS-P-fluviatile_contig79:449976..4502561622817209.245295-CDS-P-fluviatile_contig79:449976..450256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 449977..450256 -
1693571518.1948338-CDS-P-fluviatile_contig79:449976..4502561693571518.1948338-CDS-P-fluviatile_contig79:449976..450256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 449977..450256 -
1622817209.256333-CDS-P-fluviatile_contig79:450754..4507831622817209.256333-CDS-P-fluviatile_contig79:450754..450783Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 450755..450783 -
1693571518.2048185-CDS-P-fluviatile_contig79:450754..4507831693571518.2048185-CDS-P-fluviatile_contig79:450754..450783Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 450755..450783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14280.1

>prot_P-fluviatile_contig79.14280.1 ID=prot_P-fluviatile_contig79.14280.1|Name=mRNA_P-fluviatile_contig79.14280.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
MLAMRRLMSIPEKVETVVVVKVRDAGDREEASTDDGDDHVTEEVAIGKEP
VLWPAVRTMPGGRVDCKHVLVFGDRFSEATGDERCCTRIPIDEGALQLGA
CS*
back to top

mRNA from alignment at P-fluviatile_contig79:449924..450795-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14280.1 ID=mRNA_P-fluviatile_contig79.14280.1|Name=mRNA_P-fluviatile_contig79.14280.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=872bp|location=Sequence derived from alignment at P-fluviatile_contig79:449924..450795- (Porterinema fluviatile SAG_2381)
TACACGGAAAAAATGCTCGCCATGCGCCGCTTGATGTCCATGTGAGTGGC
GTGGACAGGCGGTGGAGTTGGCACCTGGTTCAGTAGTAGGCGGCGAAGAG
TAGGCGGAGCGCACGTACAGGTGTTGAGCTTGGAGTGCTCACGTTCGAAT
TTTCGTGCTCGCCATCATCTCTCTGGCGAGAGTTGGGGAGCTCGCTGCGG
TAAATCTGAATGAACAGCAGCCCTTAGGGTTATCTCGGTCGTGCGACTTT
GTGCTTTTGGTGATACACGTGTTGTCTTCGCTGCAATTTAGGCCAGAACC
GGAACAATTTACCTTCTCAAGCGGCAGAGCATTAGAATAATATTTTTTGT
GACTTCGCCTCCTGCGCGTTCACCGTGCTGCAATGCCAACTTGCATTTTG
AATCGAGCACGTCTTTGGCCACCGTTGTACCTCGGCCTCCCCGATTCGTA
ACGCTTCAGCTCTCAAAATGTCATCTGCTCTAACACCGCCGTGCGCACCC
CCCTTCGACCGCCGTTGCCATCACCCCTCATTGTTATAGCCCTGAAAAGG
TTGAGACAGTGGTGGTGGTGAAAGTCCGCGATGCGGGCGATCGGGAGGAG
GCGTCCACGGACGACGGGGACGATCACGTCACGGAGGAGGTGGCCATCGG
GAAGGAGCCGGTGTTATGGCCGGCAGTACGAACGATGCCCGGCGGCCGCG
TGGACTGCAAGCATGTGCTCGTCTTCGGCGACCGGTTCTCGGAGGCAACG
GGGGACGAGCGCTGCTGTACCCGTATCCCTATTGATGAGGGGGCACTACA
GCTTGGTGCCTGCTCGTGAAGTGCAGAAGTGCTACCAGGCGAAACGAGTG
GAGGAAGAGGCACTCTTCTGGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig79:449924..450795-

>mRNA_P-fluviatile_contig79.14280.1 ID=mRNA_P-fluviatile_contig79.14280.1|Name=mRNA_P-fluviatile_contig79.14280.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig79:449924..450795- (Porterinema fluviatile SAG_2381)
ATGCTCGCCATGCGCCGCTTGATGTCCATATGCTCGCCATGCGCCGCTTG
ATGTCCATCCCTGAAAAGGTTGAGACAGTGGTGGTGGTGAAAGTCCGCGA
TGCGGGCGATCGGGAGGAGGCGTCCACGGACGACGGGGACGATCACGTCA
CGGAGGAGGTGGCCATCGGGAAGGAGCCGGTGTTATGGCCGGCAGTACGA
ACGATGCCCGGCGGCCGCGTGGACTGCAAGCATGTGCTCGTCTTCGGCGA
CCGGTTCTCGGAGGCAACGGGGGACGAGCGCTGCTGTACCCGTATCCCTA
TTGATGAGGGGGCACTACAGCTTGGTGCCTGCTCGTGACCCTGAAAAGGT
TGAGACAGTGGTGGTGGTGAAAGTCCGCGATGCGGGCGATCGGGAGGAGG
CGTCCACGGACGACGGGGACGATCACGTCACGGAGGAGGTGGCCATCGGG
AAGGAGCCGGTGTTATGGCCGGCAGTACGAACGATGCCCGGCGGCCGCGT
GGACTGCAAGCATGTGCTCGTCTTCGGCGACCGGTTCTCGGAGGCAACGG
GGGACGAGCGCTGCTGTACCCGTATCCCTATTGATGAGGGGGCACTACAG
CTTGGTGCCTGCTCGTGA
back to top