mRNA_P-fluviatile_contig79.14263.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14263.1
Unique NamemRNA_P-fluviatile_contig79.14263.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig79.14263.1 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.080e-9
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 3 
Query:    3 KDGSRLYKKHMDDFCILRRDWGPIWDKSPCRIVANQPDGTLPSGEQYHDRLQQLLDAV 176
            KDG +++ +++D F  +R+D  P++DK+    + +QP GT PSGEQY D+L +LL A+
Sbjct:  140 KDGKKIWARYLDAFRDIRKDANPVYDKT----IGDQPGGTPPSGEQYADQLDELLQAL 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JM89_9PHAE3.080e-943.10Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:258647..259380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size178
Cds size144
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14263.1prot_P-fluviatile_contig79.14263.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 258679..259380 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817209.180311-UTR-P-fluviatile_contig79:258646..2586781622817209.180311-UTR-P-fluviatile_contig79:258646..258678Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 258647..258678 +
1693571518.1449928-UTR-P-fluviatile_contig79:258646..2586781693571518.1449928-UTR-P-fluviatile_contig79:258646..258678Porterinema fluviatile SAG_2381UTRP-fluviatile_contig79 258647..258678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817209.191351-CDS-P-fluviatile_contig79:258678..2587281622817209.191351-CDS-P-fluviatile_contig79:258678..258728Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 258679..258728 +
1693571518.1576552-CDS-P-fluviatile_contig79:258678..2587281693571518.1576552-CDS-P-fluviatile_contig79:258678..258728Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 258679..258728 +
1622817209.2053978-CDS-P-fluviatile_contig79:259286..2593801622817209.2053978-CDS-P-fluviatile_contig79:259286..259380Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 259287..259380 +
1693571518.174273-CDS-P-fluviatile_contig79:259286..2593801693571518.174273-CDS-P-fluviatile_contig79:259286..259380Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 259287..259380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14263.1

>prot_P-fluviatile_contig79.14263.1 ID=prot_P-fluviatile_contig79.14263.1|Name=mRNA_P-fluviatile_contig79.14263.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=48bp
MDDFCILRRDWGPIWDKSPCRIVANQPDGTLPSGEQYHDRLQQLLDAV
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mRNA from alignment at P-fluviatile_contig79:258647..259380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14263.1 ID=mRNA_P-fluviatile_contig79.14263.1|Name=mRNA_P-fluviatile_contig79.14263.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=734bp|location=Sequence derived from alignment at P-fluviatile_contig79:258647..259380+ (Porterinema fluviatile SAG_2381)
ACAAAGACGGGTCGAGGCTGTACAAGAAGCACATGGATGACTTCTGTATC
CTGCGGCGGGACTGGGGCCCCATCTGGGACAAGTGAGTCGATTCGCTGGA
GAAACTTCGACGATGCCTTGCGCCGCCCAGCCCCTCAGCGGCTTAGATTT
GCAGATTTGCGACTGCATCCGTTCTTGAGCATGTAAGAGGACGCTTGCCA
AATTGAATTGCGCGAGTCTGGCCACTCATTCCTTCATTAAGTTTCTGCGC
AACATCTTCAACCAAGATAACTTGTGATGAGGGAATCTATTCTAACCGCG
CAGTGAACCATTGAAAGCGCACATTATTTCCAGGAGTAGGGGGGCGGCAT
ACCCTATGTCAAAGGCAAGGAAGCATTATACATTTTCGGTGGAAACCGCT
GTATCCTCAGTCACGGCAGTCATCGTGCTGCTGCTGCTGTCGCTGCTGTC
GTCGCCGCCGGCGACGTGCCGCAGATTGTTGCGTTGCGTTTTTGCGATAA
TGGCGTCGTTTTCGATAAGCGTGATGTCGTACGCCGGTTTGATGCGTGGG
GCGGGTTTTCTGTTGCTCTCATCTCCCCGTGCGGTACGTTTGATGCGCAT
GCACTTTGCCCCCCCCCCGCCCCCGCCCCCGGTTCGCCGGGTCGCCCTGT
AGGATCGTCGCCAATCAGCCCGACGGTACTCTCCCTTCCGGGGAGCAGTA
CCACGATCGTCTCCAGCAGCTACTAGACGCCGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig79:258647..259380+

>mRNA_P-fluviatile_contig79.14263.1 ID=mRNA_P-fluviatile_contig79.14263.1|Name=mRNA_P-fluviatile_contig79.14263.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=288bp|location=Sequence derived from alignment at P-fluviatile_contig79:258647..259380+ (Porterinema fluviatile SAG_2381)
ATGGATGACTTCTGTATCCTGCGGCGGGACTGGGGCCCCATCTGGGACAA
ATGGATGACTTCTGTATCCTGCGGCGGGACTGGGGCCCCATCTGGGACAA
GTCGCCCTGTAGGATCGTCGCCAATCAGCCCGACGGTACTCTCCCTTCCG
GGGAGCAGTACCACGATCGTCTCCAGCAGCTACTAGACGCCGTGGTCGCC
CTGTAGGATCGTCGCCAATCAGCCCGACGGTACTCTCCCTTCCGGGGAGC
AGTACCACGATCGTCTCCAGCAGCTACTAGACGCCGTG
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