mRNA_P-fluviatile_contig79.14250.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig79.14250.1
Unique NamemRNA_P-fluviatile_contig79.14250.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig79.14250.1 vs. uniprot
Match: D7G1Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q7_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 2.840e-70
Identity = 120/174 (68.97%), Postives = 148/174 (85.06%), Query Frame = 1 
Query:  235 APNEVCHLHGILQWLNKAKADIVDNDRSKIQLNSDIRLLYNLLKRAKRERRSYETTITRLERSLADSKARAVELDEELQLQRRSFARVMRSDRDAYEARTEGAQETADRRGRQLKLVMTWVEKAESKYVEALGALSAQVESAGAANLGDLEGFAKNMSAEVCKLREGVATALRS 756
            AP EV HLHGILQWL++AKAD+V+NDRSK+QL  D+RLLYNLL++AKRER+S++  + RLE+S+A S  RAVELD+ELQLQR+SF RV++SDRD YE RTE A+  A+RRGR+LK +MTWVEKAESK+ EAL  LSAQ E  GAANLGDLEGFAK+MS +V KLR+GVA ++RS
Sbjct:   82 APLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGKVQRLEKSIATSNTRAVELDKELQLQRKSFTRVLKSDRDVYETRTEAAEANAERRGRELKRLMTWVEKAESKFAEALRKLSAQAEDLGAANLGDLEGFAKDMSEDVSKLRQGVADSMRS 255
[Close]
BLAST of mRNA_P-fluviatile_contig79.14250.1 vs. uniprot
Match: A0A6H5L251_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L251_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 3.330e-66
Identity = 118/174 (67.82%), Postives = 144/174 (82.76%), Query Frame = 1 
Query:  235 APNEVCHLHGILQWLNKAKADIVDNDRSKIQLNSDIRLLYNLLKRAKRERRSYETTITRLERSLADSKARAVELDEELQLQRRSFARVMRSDRDAYEARTEGAQETADRRGRQLKLVMTWVEKAESKYVEALGALSAQVESAGAANLGDLEGFAKNMSAEVCKLREGVATALRS 756
            AP EV HLHGILQWL++AKAD+V+NDRSK+QL  D+RLLYNLL++AKRER+S++  + RLE+S+A S ARAVEL      QRRSF RV++SDRD YEARTE A+  A+RRG++LK +MTWVEKAESKY EAL  LSAQ +  GAANLGDLEGFAK+MS EV KLR+GVA ++RS
Sbjct:  113 APLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLQKAKRERKSHDGKVQRLEKSIATSNARAVEL------QRRSFTRVLKSDRDVYEARTEAAEANAERRGQELKRLMTWVEKAESKYAEALRKLSAQADDLGAANLGDLEGFAKDMSEEVSKLRQGVADSVRS 280
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig79.14250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1Q7_ECTSI2.840e-7068.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L251_9PHAE3.330e-6667.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig79contigP-fluviatile_contig79:107180..110402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000050.1
Exons6
Model size831
Cds size831
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig79.14250.1prot_P-fluviatile_contig79.14250.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig79 107180..110402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817210.4544396-CDS-P-fluviatile_contig79:107179..1074611622817210.4544396-CDS-P-fluviatile_contig79:107179..107461Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 107180..107461 +
1693571519.2677956-CDS-P-fluviatile_contig79:107179..1074611693571519.2677956-CDS-P-fluviatile_contig79:107179..107461Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 107180..107461 +
1622817210.4695444-CDS-P-fluviatile_contig79:107942..1081131622817210.4695444-CDS-P-fluviatile_contig79:107942..108113Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 107943..108113 +
1693571519.2761803-CDS-P-fluviatile_contig79:107942..1081131693571519.2761803-CDS-P-fluviatile_contig79:107942..108113Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 107943..108113 +
1622817210.479161-CDS-P-fluviatile_contig79:108691..1088011622817210.479161-CDS-P-fluviatile_contig79:108691..108801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 108692..108801 +
1693571519.2867298-CDS-P-fluviatile_contig79:108691..1088011693571519.2867298-CDS-P-fluviatile_contig79:108691..108801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 108692..108801 +
1622817210.488994-CDS-P-fluviatile_contig79:109190..1092511622817210.488994-CDS-P-fluviatile_contig79:109190..109251Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 109191..109251 +
1693571519.2948418-CDS-P-fluviatile_contig79:109190..1092511693571519.2948418-CDS-P-fluviatile_contig79:109190..109251Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 109191..109251 +
1622817210.498791-CDS-P-fluviatile_contig79:109651..1097591622817210.498791-CDS-P-fluviatile_contig79:109651..109759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 109652..109759 +
1693571519.3053727-CDS-P-fluviatile_contig79:109651..1097591693571519.3053727-CDS-P-fluviatile_contig79:109651..109759Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 109652..109759 +
1622817210.5092876-CDS-P-fluviatile_contig79:110303..1104021622817210.5092876-CDS-P-fluviatile_contig79:110303..110402Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 110304..110402 +
1693571519.3130505-CDS-P-fluviatile_contig79:110303..1104021693571519.3130505-CDS-P-fluviatile_contig79:110303..110402Porterinema fluviatile SAG_2381CDSP-fluviatile_contig79 110304..110402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig79.14250.1

>prot_P-fluviatile_contig79.14250.1 ID=prot_P-fluviatile_contig79.14250.1|Name=mRNA_P-fluviatile_contig79.14250.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=277bp
DDEERIELDALRLENDTLRRHLGRLEEKIQKAEEKVLLDQEQWQTHQEEV
PQFRNDRQQLKQDDSSERKIPITTQGFNAPNEVCHLHGILQWLNKAKADI
VDNDRSKIQLNSDIRLLYNLLKRAKRERRSYETTITRLERSLADSKARAV
ELDEELQLQRRSFARVMRSDRDAYEARTEGAQETADRRGRQLKLVMTWVE
KAESKYVEALGALSAQVESAGAANLGDLEGFAKNMSAEVCKLREGVATAL
RSEPNSPDQDHSAPKERKTRNERHRVK
back to top

mRNA from alignment at P-fluviatile_contig79:107180..110402+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig79.14250.1 ID=mRNA_P-fluviatile_contig79.14250.1|Name=mRNA_P-fluviatile_contig79.14250.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3223bp|location=Sequence derived from alignment at P-fluviatile_contig79:107180..110402+ (Porterinema fluviatile SAG_2381)
GATGACGAAGAGAGGATTGAACTCGACGCCCTGCGGCTCGAGAATGACAC
CCTGAGAAGACATCTCGGTAGGCTGGAAGAGAAGATTCAAAAAGCAGAAG
AGAAGGTCCTGTTAGACCAGGAGCAGTGGCAAACTCATCAGGAAGAAGTT
CCCCAATTTCGGAATGATAGGCAGCAGCTGAAGCAGGACGACAGCAGCGA
GAGGAAAATACCAATCACGACCCAAGGGTTTAATGCCCCAAACGAAGTCT
GCCATCTTCACGGGATTCTGCAATGGCTCAATGTGAGACACTGGTTTAGC
GATGCATTGTTCAACACTTTCATGTTGGCAGGCCAAATATGCTCCGCCTA
AGCTTTGCGCAGCAACTTTAGAGTGATTCGTCCTAGGTGCTTTGTCCAGG
ATATGAGGTTAGGATAGAAAGCACGTGTGTTTCATTTCACCCTGTGCCCC
CTTCTCGCAACGTAGGTGGCGAGGCCTTGTGCTTCCTCTCGACGGAACGA
ATCCGTACTATGCCATACAAGAATATGGTTATCCCACAACACCGAAAAAT
ACAGCTTCGGGCAGGGGGCGCAGTTCATTGCCTACGCAGGTCACGTTTTG
CTCGACTTTTCTCGCGCCGCCAACTCCGGATTGCGCTTTACCTTCGAAAG
CTTGGGCCTGTCCTCAGCCTCTGCAGGAAGTTAAGCAGCCTGTAAAGTTG
CAAAAGCTTCCCATTTGTACTCGATCTTAGTTTGTTGACCCTCTTCGCGA
TCTGCCGCAACAGAAAGCGAAGGCGGATATTGTGGACAATGACCGAAGCA
AAATCCAGCTCAACAGCGACATACGACTTCTCTATAACCTGTTGAAGAGG
GCAAAGAGAGAGCGGAGGTCATACGAGACGACCATCACCAGGCTGGAGAG
ATCCCTGGCTGATTCGAAAGCCAGAGCAGTCGAGGTGATAATACCGTGAT
ATTCCTCCGTGTAGAAGGCAAGGTGCACCGCTTTTACGACACCGACATGC
AGTCTTGGTTAATGTCTCTGTGCATACAGCGATCACTGCTCCAGGGACAC
CTCGCGAGGGTCTCCTTCATGAACATCAAGCCGCTGTGAACTCTGTTGCT
CCCGGTAGCACGAGGCGACGGGCCATTGTTCACGCGCATGCTTATCGCAG
CACCTCGCACAGCGCTTTGTCTTCCCCTCAACGTGCACATATTTCAGATT
GCCATTTAGATCGGAGAGCCATAGCTCTCCATTTTGTCGCTACATTGACA
AACGATTTGACTCTTCCTTGGTGACGCGCTCTCTCTGACCACCCACACCG
TGCACCTTACGTCCGTGAAGCACTCCTCCGTAATTGCTGGCATAGCTGTG
AAAAGAGGCTAATGACTATTCCCGCGCGTGCCTGGTCCTCGCAGCACCTC
GAACATCGATCATTTCACTTTGCAGTGTTCAACCAAAGCACCCACAGCTA
AATATCTGCCTCTGCTTCTATTTTCACACCCATGACTACTAACTTTGAAC
TCTCCCGCAAAGCTGGATGAGGAGCTGCAGCTGCAGCGGCGTTCCTTCGC
GCGGGTGATGCGTTCGGATAGAGACGCTTACGAAGCCAGGACCGAAGGAG
CTCAGGAGACTGCAGATCGCAGGTAGGTCAGCAACGCACCAATTGATCGA
TTCTTGCGGAAATCAGTGTGTTCGTCGTACTTGCTTGCCCAACGCCCAAA
ATTTGGTCGACATCACCCATACTTGCGGCAAATGTTCAAATGCATGCACA
ATTTCTGATTCTACGCGTGTTCGAGTTGCAGCCACGGAATCCAACACACC
CCCACGAGAGACAGATCCAGAAAGCAATGGAGTAAAGGTCTGAAATCAAC
TGAACATTGTAAAGATTTCAAGTCTTGGTGAATCTTTGCCACTATCAACT
CCAACCGCAAGAAAGTGACCAGAAGCATCATCCGTAAAAAGACAAGCGTA
AACTACTCGAATCCTTACATGTTTCGTTTTGACCCTTGAAGCTCAATCAA
CTCGTTTCCAGGGGTCGGCAGCTAAAGCTTGTCATGACCTGGGTGGAGAA
GGCGGAGTCAAAGTATGTCGAGGTGAAAGAACGGAGCTTTCAACGTTGGT
GCCACAGTTGTTACTGTTGCTGCTGCTGTTGTGGTTGTTATTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGTTGCT
GTTGCTGTTGCTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTCGTGGTTGTTGTTG
TTATTTTCAAGCGGAATCCGGACCCCGCGACTTACTTTTATAGAAGCTGA
AAATCAACATTCGCGTTATGTCTTCATGAATACCTCACCTAATGACAGCA
ACGACGATTGTGTGCTCTGCAGGCTTTAGGAGCGCTGTCTGCGCAGGTAG
AAAGTGCCGGCGCAGCTAACTTGGGTGATTTAGAGGGGTTCGCCAAAAAC
ATGTCGGCAGAGGTCTGCAAACTCCGCGAGGTGGGAAGTAGAGTAGGCGC
ATACAGTATTCAACGTGAGGGGGGTAGGCGGTTGCTAGGGTGCGTGAATT
TTCCACGTCGATCCTCAAATTGATGGATGCTTATCAATTCCGCACGTGCT
CCCTTTCTGGCCATTGTCTAGCACCTTTGAGCCCAGCGATTTTGCTTCAA
TTAGGCGGGGACATTTCCCCAAGGCATACGCGAACGGGGACACGATTACT
TAGCCATGACCTTCACCCTAATCTAAACGCGAAAACCTCCGTTGTCGTGG
GCACTGATATCTAGGAGGAATATATCGAACCTCGGCTGTTTCATTGTGAA
AAAGGAGCGCCTCTAGTAATACACAAGATGAAATTTACAGTCAAAAATCA
GCAACAGTCCTGAATGCGTCCAGGCCAAAAAAGTAAGTAAACGTGCGCGG
TGGATACACTTAAGTACTCGCCTTGTTTTTGCTCGAAATATAGCATTTCG
ACCTTTCTTGCTCGCTCGCTCTCTCTATCACTCCTTCGGACTGACCGACG
AGTAACTTGCGGTTGTCGAACCAGGGTGTGGCAACGGCCCTGCGATCGGA
ACCAAATTCGCCGGATCAAGACCACAGCGCTCCCAAGGAAAGAAAAACAA
GAAACGAGAGGCACAGGGTGAAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig79:107180..110402+

>mRNA_P-fluviatile_contig79.14250.1 ID=mRNA_P-fluviatile_contig79.14250.1|Name=mRNA_P-fluviatile_contig79.14250.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1662bp|location=Sequence derived from alignment at P-fluviatile_contig79:107180..110402+ (Porterinema fluviatile SAG_2381)
GATGACGAAGAGAGGATTGAACTCGACGCCCTGCGGCTCGAGAATGACAC
CCTGAGAAGACATCTCGGTAGGCTGGAAGAGAAGATTCAAAAAGCAGAAG
AGAAGGTCCTGTTAGACCAGGAGCAGTGGCAAACTCATCAGGAAGAAGTT
CCCCAATTTCGGAATGATAGGCAGCAGCTGAAGCAGGACGACAGCAGCGA
GAGGAAAATACCAATCACGACCCAAGGGTTTAATGCCCCAAACGAAGTCT
GCCATCTTCACGGGATTCTGCAATGGCTCAATGATGACGAAGAGAGGATT
GAACTCGACGCCCTGCGGCTCGAGAATGACACCCTGAGAAGACATCTCGG
TAGGCTGGAAGAGAAGATTCAAAAAGCAGAAGAGAAGGTCCTGTTAGACC
AGGAGCAGTGGCAAACTCATCAGGAAGAAGTTCCCCAATTTCGGAATGAT
AGGCAGCAGCTGAAGCAGGACGACAGCAGCGAGAGGAAAATACCAATCAC
GACCCAAGGGTTTAATGCCCCAAACGAAGTCTGCCATCTTCACGGGATTC
TGCAATGGCTCAATAAAGCGAAGGCGGATATTGTGGACAATGACCGAAGC
AAAATCCAGCTCAACAGCGACATACGACTTCTCTATAACCTGTTGAAGAG
GGCAAAGAGAGAGCGGAGGTCATACGAGACGACCATCACCAGGCTGGAGA
GATCCCTGGCTGATTCGAAAGCCAGAGCAGTCGAGAAAGCGAAGGCGGAT
ATTGTGGACAATGACCGAAGCAAAATCCAGCTCAACAGCGACATACGACT
TCTCTATAACCTGTTGAAGAGGGCAAAGAGAGAGCGGAGGTCATACGAGA
CGACCATCACCAGGCTGGAGAGATCCCTGGCTGATTCGAAAGCCAGAGCA
GTCGAGCTGGATGAGGAGCTGCAGCTGCAGCGGCGTTCCTTCGCGCGGGT
GATGCGTTCGGATAGAGACGCTTACGAAGCCAGGACCGAAGGAGCTCAGG
AGACTGCAGATCGCAGCTGGATGAGGAGCTGCAGCTGCAGCGGCGTTCCT
TCGCGCGGGTGATGCGTTCGGATAGAGACGCTTACGAAGCCAGGACCGAA
GGAGCTCAGGAGACTGCAGATCGCAGGGGTCGGCAGCTAAAGCTTGTCAT
GACCTGGGTGGAGAAGGCGGAGTCAAAGTATGTCGAGGGGTCGGCAGCTA
AAGCTTGTCATGACCTGGGTGGAGAAGGCGGAGTCAAAGTATGTCGAGGC
TTTAGGAGCGCTGTCTGCGCAGGTAGAAAGTGCCGGCGCAGCTAACTTGG
GTGATTTAGAGGGGTTCGCCAAAAACATGTCGGCAGAGGTCTGCAAACTC
CGCGAGGCTTTAGGAGCGCTGTCTGCGCAGGTAGAAAGTGCCGGCGCAGC
TAACTTGGGTGATTTAGAGGGGTTCGCCAAAAACATGTCGGCAGAGGTCT
GCAAACTCCGCGAGGGTGTGGCAACGGCCCTGCGATCGGAACCAAATTCG
CCGGATCAAGACCACAGCGCTCCCAAGGAAAGAAAAACAAGAAACGAGAG
GCACAGGGTGAAGGGTGTGGCAACGGCCCTGCGATCGGAACCAAATTCGC
CGGATCAAGACCACAGCGCTCCCAAGGAAAGAAAAACAAGAAACGAGAGG
CACAGGGTGAAG
back to top