mRNA_P-fluviatile_contig78.14243.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14243.1
Unique NamemRNA_P-fluviatile_contig78.14243.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig78.14243.1 vs. uniprot
Match: A0A6H5K7Y9_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y9_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.640e-6
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:    3 VRRELGGSQSYDVERIVDRQPDQDPIK 83
            VRRELGGSQSYDVERIVDRQP QDP+K
Sbjct:  119 VRRELGGSQSYDVERIVDRQPAQDPVK 145
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BLAST of mRNA_P-fluviatile_contig78.14243.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.660e-6
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:    3 VRRELGGSQSYDVERIVDRQPDQDPIK 83
            VRRELGGSQSYDVERIVDRQP QDP+K
Sbjct:  399 VRRELGGSQSYDVERIVDRQPAQDPVK 425
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BLAST of mRNA_P-fluviatile_contig78.14243.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.670e-6
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:    3 VRRELGGSQSYDVERIVDRQPDQDPIK 83
            VRRELGGSQSYDVERIVDRQP QDP+K
Sbjct:  559 VRRELGGSQSYDVERIVDRQPAQDPVK 585
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BLAST of mRNA_P-fluviatile_contig78.14243.1 vs. uniprot
Match: A0A6H5KGV5_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV5_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.060e-5
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:    3 VRRELGGSQSYDVERIVDRQPDQDPIK 83
            VR ELGGSQSYDVERIVDRQP QDP+K
Sbjct:   47 VRSELGGSQSYDVERIVDRQPAQDPVK 73
[Close]
BLAST of mRNA_P-fluviatile_contig78.14243.1 vs. uniprot
Match: A0A6H5KC96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC96_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.450e-5
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:    3 VRRELGGSQSYDVERIVDRQPDQDPIK 83
            VRRELGGSQSYDVERI DRQP QDP+K
Sbjct:  248 VRRELGGSQSYDVERIGDRQPAQDPVK 274
[Close]
BLAST of mRNA_P-fluviatile_contig78.14243.1 vs. uniprot
Match: A0A6H5KFX8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.450e-5
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:    3 VRRELGGSQSYDVERIVDRQPDQDPIK 83
            VRRELGGSQSYDVERIVDRQP Q P+K
Sbjct:   36 VRRELGGSQSYDVERIVDRQPAQHPVK 62
[Close]
BLAST of mRNA_P-fluviatile_contig78.14243.1 vs. uniprot
Match: A0A6H5KAB1_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.480e-5
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 3 
Query:    3 VRRELGGSQSYDVERIVDRQPDQDPIK 83
            VRRELGGSQSYDVE IVDRQP QDP+K
Sbjct:  422 VRRELGGSQSYDVEPIVDRQPAQDPVK 448
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K7Y9_9PHAE1.640e-692.59SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JP13_9PHAE1.660e-692.59SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KG54_9PHAE1.670e-692.59SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KGV5_9PHAE1.060e-588.89SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KC96_9PHAE1.450e-588.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFX8_9PHAE1.450e-588.89SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAB1_9PHAE1.480e-588.89SWIM-type domain-containing protein (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:513026..514340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.487162-CDS-P-fluviatile_contig78:513025..5131081622817203.487162-CDS-P-fluviatile_contig78:513025..513108Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 513026..513108 +
1693571507.0694268-CDS-P-fluviatile_contig78:513025..5131081693571507.0694268-CDS-P-fluviatile_contig78:513025..513108Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 513026..513108 +
1622817203.498055-CDS-P-fluviatile_contig78:514222..5143401622817203.498055-CDS-P-fluviatile_contig78:514222..514340Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 514223..514340 +
1693571507.0807035-CDS-P-fluviatile_contig78:514222..5143401693571507.0807035-CDS-P-fluviatile_contig78:514222..514340Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 514223..514340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14243.1prot_P-fluviatile_contig78.14243.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 513026..514340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14243.1

>prot_P-fluviatile_contig78.14243.1 ID=prot_P-fluviatile_contig78.14243.1|Name=mRNA_P-fluviatile_contig78.14243.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=67bp
TSDASSGDRSRTTWSASSTANPTKTPSRAGVRLWRERSVGTAVRCRSLVL
RLLLHPGYILTPAILPA
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mRNA from alignment at P-fluviatile_contig78:513026..514340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14243.1 ID=mRNA_P-fluviatile_contig78.14243.1|Name=mRNA_P-fluviatile_contig78.14243.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1315bp|location=Sequence derived from alignment at P-fluviatile_contig78:513026..514340+ (Porterinema fluviatile SAG_2381)
ACGTCCGACGCGAGCTCGGGGGATCGCAGTCGTACGACGTGGAGCGCATC
GTCGACCGCCAACCCGACCAAGACCCCATCAAGGTGGGGCGAATTTACGA
CCTTAGGGTTAGCCTCAACCTCTTGCAACCGCCACCACCCGCCACGGACC
TCGACGAAGGATGCGAGAATGGCCGTGAGGAGGATCCGTCGTCGACACCA
GCATGTGGGCGCGCACTCTCTGGAGGATTTTTGTCCCTGACCCAAGATGT
TCCTACCTCTACGATCTTCGCCGTGCGGTACAAGCTTACCCCAATCGGCC
GTGCCACCTGGTGGTTTTCGGCCCTGGGGACTTTCATTTGAGCTCATGCT
TACGGCTCCTCCAGCACGGCCTACCGTGCAGACACTACTTCGCAGTTCTC
CTTGTTTGTGCTGGGGCGGGACCTATGTTAACCCGCTGCGGACTTGCCGG
AGGCGCCTCTGGTTGTAGAACTTGACTCATTTATTAATCACACATGAGCT
ACGCGCAGAGCCGCAATGTAGTTGCCATTAGGGAACTTCGTGAAGTGGAC
CTTGCCGTTGTACGTGTACATGCCAGTTGAATCCATGTAGACCCTGTGTT
CCTCCTGTGCCTTGTTGAGCGAGATCAAGGTGAACTTTAGCCCAGGTACG
TAGGCCACCTCCGATATGGTCACACGGACAGGATCACGCAGCTCCGAGTA
GAACACCACGTCCAGCTTCCCGTAACACTCTACCTTGAGCTTCCGACCAT
CGCCGACCGTGAGGAAAGCCTCGTGCGGTAGAGGGGTGCGCTTGTCATAC
ATGTGACTGTCAGAACCGGTAGCATGCACAGAAGAGGCGCTGTCGGCAAT
AGCCACTGACACATCAGGTTCGTCATGCAGAAGCTCTGGGACAAGCATAG
ACAGCACGTGAGGGGAAACGGTGAAATCGTACTGCAAGGCAAGAAAATGA
GCAGCCGGCTGGTCCTCCTCCAAGCCGTCATAGGTGCATGCCAGCAACCC
ACCACCGCCTTCGCCAGCAACCACATCGTGCTCGTCGTTGCATCCGCTTT
GCTCACTCTCCTGCAGCGGACCAGTTTCGTTCCAATTGCACTCCGCTGGC
CACGTCTCTCCAATAGCTCCGCCCTGCTGGCCTGAACCGCCGCTGGCTTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCGGCTGCTGTGCAGGGC
TGGAGTCCGGTTGTGGAGGGAGAGGAGCGTAGGCACTGCCGTACGCTGCC
GTTCCCTCGTCCTCCGGTTGCTGCTGCACCCAGGGTACATCCTCACCCCA
GCCATCCTCCCAGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:513026..514340+

>mRNA_P-fluviatile_contig78.14243.1 ID=mRNA_P-fluviatile_contig78.14243.1|Name=mRNA_P-fluviatile_contig78.14243.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=402bp|location=Sequence derived from alignment at P-fluviatile_contig78:513026..514340+ (Porterinema fluviatile SAG_2381)
ACGTCCGACGCGAGCTCGGGGGATCGCAGTCGTACGACGTGGAGCGCATC
GTCGACCGCCAACCCGACCAAGACCCCATCAAGACGTCCGACGCGAGCTC
GGGGGATCGCAGTCGTACGACGTGGAGCGCATCGTCGACCGCCAACCCGA
CCAAGACCCCATCAAGGGCTGGAGTCCGGTTGTGGAGGGAGAGGAGCGTA
GGCACTGCCGTACGCTGCCGTTCCCTCGTCCTCCGGTTGCTGCTGCACCC
AGGGTACATCCTCACCCCAGCCATCCTCCCAGCCGGCTGGAGTCCGGTTG
TGGAGGGAGAGGAGCGTAGGCACTGCCGTACGCTGCCGTTCCCTCGTCCT
CCGGTTGCTGCTGCACCCAGGGTACATCCTCACCCCAGCCATCCTCCCAG
CC
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