mRNA_P-fluviatile_contig78.14239.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14239.1
Unique NamemRNA_P-fluviatile_contig78.14239.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:439432..440122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size674
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14239.1prot_P-fluviatile_contig78.14239.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 439432..439967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.4268057-CDS-P-fluviatile_contig78:439431..4397941622817203.4268057-CDS-P-fluviatile_contig78:439431..439794Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 439432..439794 -
1693571507.027692-CDS-P-fluviatile_contig78:439431..4397941693571507.027692-CDS-P-fluviatile_contig78:439431..439794Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 439432..439794 -
1622817203.4406223-CDS-P-fluviatile_contig78:439811..4399671622817203.4406223-CDS-P-fluviatile_contig78:439811..439967Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 439812..439967 -
1693571507.0412447-CDS-P-fluviatile_contig78:439811..4399671693571507.0412447-CDS-P-fluviatile_contig78:439811..439967Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 439812..439967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.459218-UTR-P-fluviatile_contig78:439967..4401221622817203.459218-UTR-P-fluviatile_contig78:439967..440122Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 439968..440122 -
1693571507.0539796-UTR-P-fluviatile_contig78:439967..4401221693571507.0539796-UTR-P-fluviatile_contig78:439967..440122Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 439968..440122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14239.1

>prot_P-fluviatile_contig78.14239.1 ID=prot_P-fluviatile_contig78.14239.1|Name=mRNA_P-fluviatile_contig78.14239.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=173bp
MGSDPELAGVGPKSLVQISSGHFSSCDSLHSILLVQIYALKLWHSDRKVL
LFAAQWRETHEKCAYFIRADFFRTGSSTIRSWGAAHSNITDLRTYITVLH
LSITDLRPCAVGGRNSSRKPPHVKRLPNIVAEQTFFRTWVQVHLETNGIK
CQQTKNVSTEIVKIRLFRRKKF*
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mRNA from alignment at P-fluviatile_contig78:439432..440122-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14239.1 ID=mRNA_P-fluviatile_contig78.14239.1|Name=mRNA_P-fluviatile_contig78.14239.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=691bp|location=Sequence derived from alignment at P-fluviatile_contig78:439432..440122- (Porterinema fluviatile SAG_2381)
GGTACATGTCATACCTCTCGTGTCGAATCTTAGCGCGCGCTAGGCGTGCC
ATACCTACTTGTGTGGGAAGAATTGCGCGTGCGGCGACGCGCGCTGCGAG
CTAGTCGTCTTCAAAAAAACAACGGAGGGGGGGGGTGCATCCAAAATTCG
AATCGATGGGATCGGACCCCGAACTGGCGGGAGTCGGGCCAAAATCCCTC
GTGCAAATTTCCAGCGGTCACTTTAGCTCGTGCGATTCTCTTCATTCAAT
CTTGCTCGTGCAAATTTACGCCCTAAAATTGTGGCATTCCGACCGTAAAG
TGTTGCTGTTTGCAAGGATGCCCTTGAGGCCGCTCAGTGGCGCGAGACAC
ACGAAAAGTGTGCTTATTTTATTCGGGCAGACTTCTTCCGCACTGGCAGT
AGCACGATCAGGTCATGGGGTGCCGCCCACTCAAACATCACAGATCTCCG
TACTTACATCACAGTTCTCCATCTTAGCATCACAGATCTCCGTCCTTGTG
CGGTAGGAGGAAGGAACTCAAGCCGCAAGCCGCCTCACGTCAAACGATTA
CCTAACATTGTTGCAGAGCAAACATTTTTTCGAACGTGGGTTCAAGTCCA
TCTTGAAACGAATGGAATCAAGTGTCAACAAACAAAAAACGTGTCGACGG
AAATAGTCAAAATAAGGTTGTTTAGGCGTAAAAAATTTTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:439432..440122-

>mRNA_P-fluviatile_contig78.14239.1 ID=mRNA_P-fluviatile_contig78.14239.1|Name=mRNA_P-fluviatile_contig78.14239.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1038bp|location=Sequence derived from alignment at P-fluviatile_contig78:439432..440122- (Porterinema fluviatile SAG_2381)
ATGGGATCGGACCCCGAACTGGCGGGAGTCGGGCCAAAATCCCTCGTGCA
AATTTCCAGCGGTCACTTTAGCTCGTGCGATTCTCTTCATTCAATCTTGC
TCGTGCAAATTTACGCCCTAAAATTGTGGCATTCCGACCGTAAAGTGTTG
CTGTTTATGGGATCGGACCCCGAACTGGCGGGAGTCGGGCCAAAATCCCT
CGTGCAAATTTCCAGCGGTCACTTTAGCTCGTGCGATTCTCTTCATTCAA
TCTTGCTCGTGCAAATTTACGCCCTAAAATTGTGGCATTCCGACCGTAAA
GTGTTGCTGTTTGCCGCTCAGTGGCGCGAGACACACGAAAAGTGTGCTTA
TTTTATTCGGGCAGACTTCTTCCGCACTGGCAGTAGCACGATCAGGTCAT
GGGGTGCCGCCCACTCAAACATCACAGATCTCCGTACTTACATCACAGTT
CTCCATCTTAGCATCACAGATCTCCGTCCTTGTGCGGTAGGAGGAAGGAA
CTCAAGCCGCAAGCCGCCTCACGTCAAACGATTACCTAACATTGTTGCAG
AGCAAACATTTTTTCGAACGTGGGTTCAAGTCCATCTTGAAACGAATGGA
ATCAAGTGTCAACAAACAAAAAACGTGTCGACGGAAATAGTCAAAATAAG
GTTGTTTAGGCGTAAAAAATTTTGAGCCGCTCAGTGGCGCGAGACACACG
AAAAGTGTGCTTATTTTATTCGGGCAGACTTCTTCCGCACTGGCAGTAGC
ACGATCAGGTCATGGGGTGCCGCCCACTCAAACATCACAGATCTCCGTAC
TTACATCACAGTTCTCCATCTTAGCATCACAGATCTCCGTCCTTGTGCGG
TAGGAGGAAGGAACTCAAGCCGCAAGCCGCCTCACGTCAAACGATTACCT
AACATTGTTGCAGAGCAAACATTTTTTCGAACGTGGGTTCAAGTCCATCT
TGAAACGAATGGAATCAAGTGTCAACAAACAAAAAACGTGTCGACGGAAA
TAGTCAAAATAAGGTTGTTTAGGCGTAAAAAATTTTGA
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