mRNA_P-fluviatile_contig78.14228.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14228.1
Unique NamemRNA_P-fluviatile_contig78.14228.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:361998..362801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size388
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.3811786-CDS-P-fluviatile_contig78:361999..3621161622817203.3811786-CDS-P-fluviatile_contig78:361999..362116Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 362000..362116 -
1693571506.838867-CDS-P-fluviatile_contig78:361999..3621161693571506.838867-CDS-P-fluviatile_contig78:361999..362116Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 362000..362116 -
1622817203.3921714-CDS-P-fluviatile_contig78:362534..3628011622817203.3921714-CDS-P-fluviatile_contig78:362534..362801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 362535..362801 -
1693571506.8486648-CDS-P-fluviatile_contig78:362534..3628011693571506.8486648-CDS-P-fluviatile_contig78:362534..362801Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 362535..362801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14228.1prot_P-fluviatile_contig78.14228.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 362000..362801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14228.1

>prot_P-fluviatile_contig78.14228.1 ID=prot_P-fluviatile_contig78.14228.1|Name=mRNA_P-fluviatile_contig78.14228.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=128bp
QRKSSRQCNNIPHDPGGRVDDKLLLDGGHPSAAAKRGAARDQSNHIPIKA
GNQSPRIAFIGVFLNGVGVALASFAPCGANDARLALVKALLLEQGTILRP
GSCYTARGSELAVQMVVDQKHRVYACIT
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mRNA from alignment at P-fluviatile_contig78:361998..362801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14228.1 ID=mRNA_P-fluviatile_contig78.14228.1|Name=mRNA_P-fluviatile_contig78.14228.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=804bp|location=Sequence derived from alignment at P-fluviatile_contig78:361998..362801- (Porterinema fluviatile SAG_2381)
CAACGCAAGTCGTCGCGGCAATGCAATAATATTCCTCATGATCCGGGTGG
TCGCGTTGACGACAAGCTGCTACTGGATGGGGGGCATCCCTCAGCCGCCG
CCAAGCGTGGGGCGGCTCGTGATCAAAGCAACCATATACCCATCAAGGCC
GGCAACCAGTCTCCACGGATAGCTTTCATTGGGGTGTTTTTGAACGGGGT
CGGGGTGGCATTGGCTAGCTTCGCCCCGTGTGGAGCAAACGACGCAAGAC
TAGCTCTGGTCAAAGCGGTAAGTGTAGTGATAAGGTGATGGTCCCGAGCT
TGCTCAGGCAGAACACGTACACGATACTATTGGTCACGCATACAGCAACG
ACCCATTATTGTCGTATACAGCAACGACCCATTATTGTCGTATTTTGTCG
TGTCGTCCACGGAAACTGCATACTGCAGATATGAGCGCTCGCCCACGGGT
CCTAACCCTCACCGTTTCTTTGCAAGTGTGATTGTATCAACAACTGGGAT
GCAATTTCTTCGGATAGAAACGAGCAAACGTTGGGATCGAAGGTTTACTT
CGGAACGGGGACACATCTGGCGGGTTTGAAAAACAGAACAAGTCGGTCTT
GATATCACCGAAGAGATGTTCAGTGCCATTTCGACCCCTTTCCCTGCCTC
ATCCTCTCTTTCTTTGCGTGCTCATACTGTCCCAGCTGTTGCTTGAACAG
GGCACCATCTTGAGACCTGGCAGTTGCTACACCGCACGGGGGTCGGAGCT
AGCCGTGCAGATGGTTGTCGATCAAAAGCATCGAGTGTATGCCTGCATTA
CCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:361998..362801-

>mRNA_P-fluviatile_contig78.14228.1 ID=mRNA_P-fluviatile_contig78.14228.1|Name=mRNA_P-fluviatile_contig78.14228.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=768bp|location=Sequence derived from alignment at P-fluviatile_contig78:361998..362801- (Porterinema fluviatile SAG_2381)
CAACGCAAGTCGTCGCGGCAATGCAATAATATTCCTCATGATCCGGGTGG
TCGCGTTGACGACAAGCTGCTACTGGATGGGGGGCATCCCTCAGCCGCCG
CCAAGCGTGGGGCGGCTCGTGATCAAAGCAACCATATACCCATCAAGGCC
GGCAACCAGTCTCCACGGATAGCTTTCATTGGGGTGTTTTTGAACGGGGT
CGGGGTGGCATTGGCTAGCTTCGCCCCGTGTGGAGCAAACGACGCAAGAC
TAGCTCTGGTCAAAGCGCAACGCAAGTCGTCGCGGCAATGCAATAATATT
CCTCATGATCCGGGTGGTCGCGTTGACGACAAGCTGCTACTGGATGGGGG
GCATCCCTCAGCCGCCGCCAAGCGTGGGGCGGCTCGTGATCAAAGCAACC
ATATACCCATCAAGGCCGGCAACCAGTCTCCACGGATAGCTTTCATTGGG
GTGTTTTTGAACGGGGTCGGGGTGGCATTGGCTAGCTTCGCCCCGTGTGG
AGCAAACGACGCAAGACTAGCTCTGGTCAAAGCGCTGTTGCTTGAACAGG
GCACCATCTTGAGACCTGGCAGTTGCTACACCGCACGGGGGTCGGAGCTA
GCCGTGCAGATGGTTGTCGATCAAAAGCATCGAGTGTATGCCTGCATTAC
CCTGTTGCTTGAACAGGGCACCATCTTGAGACCTGGCAGTTGCTACACCG
CACGGGGGTCGGAGCTAGCCGTGCAGATGGTTGTCGATCAAAAGCATCGA
GTGTATGCCTGCATTACC
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