mRNA_P-fluviatile_contig78.14224.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14224.1
Unique NamemRNA_P-fluviatile_contig78.14224.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:327204..327798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14224.1prot_P-fluviatile_contig78.14224.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 327290..327652 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.7532585-UTR-P-fluviatile_contig78:327203..3272891622817203.7532585-UTR-P-fluviatile_contig78:327203..327289Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 327204..327289 +
1693571507.2460134-UTR-P-fluviatile_contig78:327203..3272891693571507.2460134-UTR-P-fluviatile_contig78:327203..327289Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 327204..327289 +
1622817203.776801-UTR-P-fluviatile_contig78:327652..3277981622817203.776801-UTR-P-fluviatile_contig78:327652..327798Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 327653..327798 +
1693571507.4519753-UTR-P-fluviatile_contig78:327652..3277981693571507.4519753-UTR-P-fluviatile_contig78:327652..327798Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 327653..327798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.7663126-CDS-P-fluviatile_contig78:327289..3276521622817203.7663126-CDS-P-fluviatile_contig78:327289..327652Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 327290..327652 +
1693571507.4335563-CDS-P-fluviatile_contig78:327289..3276521693571507.4335563-CDS-P-fluviatile_contig78:327289..327652Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 327290..327652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14224.1

>prot_P-fluviatile_contig78.14224.1 ID=prot_P-fluviatile_contig78.14224.1|Name=mRNA_P-fluviatile_contig78.14224.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=121bp
MKAPLRLPRVLSPTELSLLAPPCTSSNITEGPMSRGGRSCATSTCVSRRR
CPPLAQGDLFSAGSTDPTTWRSSRPSYRGLVPGGLSSRLQLHCRQLLCPS
RRLAVGRTPPQELLLYVLLP*
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mRNA from alignment at P-fluviatile_contig78:327204..327798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14224.1 ID=mRNA_P-fluviatile_contig78.14224.1|Name=mRNA_P-fluviatile_contig78.14224.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=595bp|location=Sequence derived from alignment at P-fluviatile_contig78:327204..327798+ (Porterinema fluviatile SAG_2381)
ATTCCGACCAGTTCCTCTCCTTCAACAGGGGTGGTTGGATTCTAACTTGA
CGGAGATATGACGAAGATACTCCACCTCCGCCATGGATGAAAGCGCCATT
GCGATTACCACGGGTACTCTCACCTACGGAGCTTTCGCTCCTAGCTCCCC
CGTGTACATCGTCCAACATTACAGAAGGGCCCATGTCTCGCGGCGGCCGC
TCTTGCGCCACGTCGACATGCGTATCTCGACGCCGCTGTCCCCCCCTTGC
ACAGGGGGACCTGTTCTCTGCTGGCTCAACTGATCCAACAACTTGGAGAT
CGAGTCGGCCATCGTACCGAGGCCTCGTTCCAGGAGGCCTATCCTCTCGT
TTACAGCTGCATTGCCGGCAGCTGCTGTGTCCGTCCCGCCGCCTGGCGGT
GGGTCGGACTCCTCCACAGGAGCTCCTCCTGTACGTTCTTCTGCCATAGA
AAGCGCGATTCCCTAGGGATCACTCTAGAGTGTTCGTATATCGCTTATTC
GCTCCCAGAAGGATGGTTTAATAGTCTTATTAAGTCACGGGATGTGGCCA
AACAGCAAGGGCCAAGAGAGGGACTCTCACGACAGAAGAGAGAGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:327204..327798+

>mRNA_P-fluviatile_contig78.14224.1 ID=mRNA_P-fluviatile_contig78.14224.1|Name=mRNA_P-fluviatile_contig78.14224.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=726bp|location=Sequence derived from alignment at P-fluviatile_contig78:327204..327798+ (Porterinema fluviatile SAG_2381)
ATGAAAGCGCCATTGCGATTACCACGGGTACTCTCACCTACGGAGCTTTC
GCTCCTAGCTCCCCCGTGTACATCGTCCAACATTACAGAAGGGCCCATGT
CTCGCGGCGGCCGCTCTTGCGCCACGTCGACATGCGTATCTCGACGCCGC
TGTCCCCCCCTTGCACAGGGGGACCTGTTCTCTGCTGGCTCAACTGATCC
AACAACTTGGAGATCGAGTCGGCCATCGTACCGAGGCCTCGTTCCAGGAG
GCCTATCCTCTCGTTTACAGCTGCATTGCCGGCAGCTGCTGTGTCCGTCC
CGCCGCCTGGCGGTGGGTCGGACTCCTCCACAGGAGCTCCTCCTGTACGT
TCTTCTGCCATAGATGAAAGCGCCATTGCGATTACCACGGGTACTCTCAC
CTACGGAGCTTTCGCTCCTAGCTCCCCCGTGTACATCGTCCAACATTACA
GAAGGGCCCATGTCTCGCGGCGGCCGCTCTTGCGCCACGTCGACATGCGT
ATCTCGACGCCGCTGTCCCCCCCTTGCACAGGGGGACCTGTTCTCTGCTG
GCTCAACTGATCCAACAACTTGGAGATCGAGTCGGCCATCGTACCGAGGC
CTCGTTCCAGGAGGCCTATCCTCTCGTTTACAGCTGCATTGCCGGCAGCT
GCTGTGTCCGTCCCGCCGCCTGGCGGTGGGTCGGACTCCTCCACAGGAGC
TCCTCCTGTACGTTCTTCTGCCATAG
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