mRNA_P-fluviatile_contig78.14223.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14223.1
Unique NamemRNA_P-fluviatile_contig78.14223.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 1.580e-101
Identity = 175/254 (68.90%), Postives = 204/254 (80.31%), Query Frame = 3 
Query: 1464 SVLKRFEVDSVSEVPISPCADLGPRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPLSSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMN 2225
            S++ RF+V S S +P SP  D+GP+RD ES G+WPVR+A+GSMMW+ST SR D IS+A+R VA+HAH P ERHW+ I KILAYL  T+DLG+T+ +GSGL L VYVDASYA D  DRRSVSGLA  +GG V+SH S TQ I++ SS EAEYIAAG GV EALFV+ VLSFIAPETS S I++LEDN+GAMALVQNPLSS RSKHIDVR+HFIR LFRSG ISI+ VST  QHAD+LTKALSKS  Q HR   MN
Sbjct:  255 SIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPD-ISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506
[Close]
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 2.530e-97
Identity = 164/260 (63.08%), Postives = 202/260 (77.69%), Query Frame = 3 
Query: 1467 VLKRFEVDSVSEVPISPCADLGPRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPL-----SSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMNLP 2231
            +++RF+V S S +P +P ADLGP+R+ E  G+WPVR+A+GSMMW+ST SR D +S+A+R VA+HAH P +RHW  IQKIL YL GT+DLG+T+ +GSGL L VYVDASYA D  DRRSVSGLA   GG VVSH S  Q I++ SS EAE+IAAG GV EALF++ VLSF+APET  S I++LEDN+G MALVQNPL     SSGR+KHIDVRFHFIR LFRSG I+++ V T  QHAD+LT+ALS++  Q HR   MNLP
Sbjct:    1 MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPD-VSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTGGGTVVSHGSKKQSIVSLSSTEAEHIAAGEGVKEALFMRAVLSFVAPETRGSSIQVLEDNQGGMALVQNPLVQNPLSSGRTKHIDVRFHFIRGLFRSGDITVKFVPTTEQHADLLTQALSRASLQYHRRKLMNLP 258
[Close]
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 4.130e-96
Identity = 169/255 (66.27%), Postives = 205/255 (80.39%), Query Frame = 3 
Query: 1467 VLKRFEVDSVSEVPISPCADLGPRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPLSSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMNLP 2231
            +++RF+V S S +P +P ADLGP+R+ E  G+WPVR+A+GSMMW+ST SR D +S+A+R VA+HAH P +RHW  IQKIL YL GT+DLG+T+ +GSGL L VYVDASYA D  DRRSVSGLA  +GG VVSH S TQ I++ SS EAEYIAAG GV EALFV+ VLSF+APETS S I++LEDN+GA+ALVQNPLSSGR+KHIDVR+HFIR LFRSG IS++ V T  QHAD+LTKALS+   Q HR   MNLP
Sbjct:  601 MVERFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPD-VSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLP 853
[Close]
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 6.230e-95
Identity = 168/256 (65.62%), Postives = 201/256 (78.52%), Query Frame = 3 
Query: 1464 SVLKRFEVDSVSEVPISPCADLGPRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPLSSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMNLP 2231
            S++ RF+V S S +P +P ADLGP+R+ E  G+WPVR+A+GSMMW+ST SR D +S+A+R VA+HAH P +RHW  IQKIL YL GT+DLG+T+ +GSGL L VYVDASYA D  DRRSVSGLA  +GG VVSH S TQ I++ SS EAEYIAAG GV EALFV+ VL F+APET  S I++LEDN+GAMALVQNPLSSGR+ HIDVRFHFIR LF SG IS++ V T  QHAD+LTKAL K+  Q HR   MNLP
Sbjct:  503 SMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPD-VSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQHADLLTKALRKASLQYHRRKLMNLP 756
[Close]
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 1.860e-94
Identity = 176/255 (69.02%), Postives = 205/255 (80.39%), Query Frame = 3 
Query: 1467 VLKRFEVDSVSEVPISPCADLGPRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPLSSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMNLP 2231
            ++ RF+V S S +P SP  D+GP+RD ES G+WPVR+A+GSMMW+ST SR D IS+A+R VA+HAH P ERHW+ I KILAYL  T+DLG+T+ +GSGL L VYVDASYA D  DRRSVSGLA  +GG V+SH S TQ I++ SS EAEYIAAG GV EALFV+ VLSFIAPETS S I++LEDN+GAMALVQNPLSS RSKHIDVR+HFIR LFRSG ISI+ VST  QHAD+LTKALSKS  Q HR   MNLP
Sbjct: 1645 IVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPD-ISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLP 1897
[Close]
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 2.690e-94
Identity = 171/256 (66.80%), Postives = 206/256 (80.47%), Query Frame = 3 
Query: 1464 SVLKRFEVDSVSEVPISPCADLGPRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPLSSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMNLP 2231
            S+++RF+V S S +P +P ADLGP+R+ E  G+WPVR+A+GSMMW+ST SR D +S+A+R VA+HAH P +RHW  IQKIL YL GT+DLG+T+ +GSGL L VYVDASYA D  DRRSVSGLA  +GG VVSH S TQ I++ SS EAEYIAAG GV EALFV+ VLSF+APETS S IK+LEDN+GA+ALVQNPLSSGR+KHIDVR+HFIR LFRSG IS++ V T  QHAD+LTKALS+   Q HR   MNLP
Sbjct:  992 SMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPD-VSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLP 1245
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BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5KXX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX2_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 6.150e-94
Identity = 158/255 (61.96%), Postives = 196/255 (76.86%), Query Frame = 3 
Query: 1467 VLKRFEVDSVSEVPISPCADLGPRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPLSSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMNLP 2231
            +++R +V S S +P +P ADLGP+RD E  G+WPVR+ +GSMMW+ST SR D +S+A+R VA+HAH P++RHW  IQKIL YL GT+DLG+T+ +GSGL+L VYV+ASYA D  D+ SVSGLA   GG      S TQ I+  SS EAEYIAAG GV EALFV+  LSF+APETS S I++LEDN+GA+A+VQNPLSS R+KHID+RFHFIR LFRSG IS + V T  QHAD+LTKALS++  Q HR   MNLP
Sbjct:    1 MVRRIDVQSTSHIPATPVADLGPKRDDEKGGEWPVREVIGSMMWVSTFSRPD-VSFAVRAVARHAHAPSKRHWDAIQKILGYLQGTRDLGITYQQGSGLRLAVYVNASYA-DTEDKHSVSGLATTGGG------SKTQSIVTLSSTEAEYIAAGEGVKEALFVRAALSFVAPETSGSNIQVLEDNQGAIAVVQNPLSSSRTKHIDLRFHFIRRLFRSGDISAKLVPTTGQHADLLTKALSRASLQYHRRKLMNLP 247
[Close]
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 4.730e-93
Identity = 171/256 (66.80%), Postives = 206/256 (80.47%), Query Frame = 3 
Query: 1464 SVLKRFEVDSVSEVPISPCADLGPRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPLSSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMNLP 2231
            S+++RF+V S S +P +P ADLGP+R+ E  G+WPVR+A+GSMMW+ST SR D +S+A+R VA+HAH P +RHW  IQKIL YL GT+DLG+T+ +GSGL L VYVDASYA D  DRRSVSGLA  +GG VVSH S TQ I++ SS EAEYIAAG GV EALFV+ VLSF+APETS S IK+LEDN+GA+ALVQNPLSSGR+KHIDVR+HFIR LFRSG IS++ V T  QHAD+LTKALS+   Q HR   MNLP
Sbjct: 1371 SMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPD-VSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLP 1624
[Close]
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 7.450e-93
Identity = 171/256 (66.80%), Postives = 206/256 (80.47%), Query Frame = 3 
Query: 1464 SVLKRFEVDSVSEVPISPCADLGPRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPLSSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMNLP 2231
            S+++RF+V S S +P +P ADLGP+R+ E  G+WPVR+A+GSMMW+ST SR D +S+A+R VA+HAH P +RHW  IQKIL YL GT+DLG+T+ +GSGL L VYVDASYA D  DRRSVSGLA  +GG VVSH S TQ I++ SS EAEYIAAG GV EALFV+ VLSF+APETS S IK+LEDN+GA+ALVQNPLSSGR+KHIDVR+HFIR LFRSG IS++ V T  QHAD+LTKALS+   Q HR   MNLP
Sbjct: 1534 SMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPD-VSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA-DTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLP 1787
[Close]
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 1.420e-92
Identity = 166/233 (71.24%), Postives = 190/233 (81.55%), Query Frame = 3 
Query: 1533 PRRDGESSGDWPVRQAVGSMMWLSTNSRADDISYALRTVAKHAHNPTERHWRGIQKILAYLNGTKDLGLTFVKGSGLQLTVYVDASYANDPSDRRSVSGLAAFLGGAVVSHKSATQPIIAQSSAEAEYIAAGAGVNEALFVQHVLSFIAPETSKSVIKILEDNEGAMALVQNPLSSGRSKHIDVRFHFIRELFRSGTISIEHVSTENQHADVLTKALSKSLFQKHRAAFMNLP 2231
            P+RD ES G+WPVR+A+GSMMW+ST SR D IS+A+R VA+HAH P ERHW+ I KILAYL  T+DLG+T+ +GSGL L VYVDASYA D  DRRSVSGLA  +GG V+SH S TQ I++ SS EAEYIAAG GV EALFV+ VLSFIAPETS S I++LEDN+GAMALVQNPLSS RSKHIDVR+HFIR LFRSG ISI+ VST  QHAD+LTKALSKS  Q HR   MNLP
Sbjct:  365 PKRDDESGGEWPVREAIGSMMWVSTFSRPD-ISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYA-DAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLP 595
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE1.580e-10168.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCA5_9PHAE2.530e-9763.08Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGN1_9PHAE4.130e-9666.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K274_9PHAE6.230e-9565.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGF7_9PHAE1.860e-9469.02Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE2.690e-9466.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KXX2_9PHAE6.150e-9461.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ8_9PHAE4.730e-9366.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE7.450e-9366.80Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KGX6_9PHAE1.420e-9271.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:321312..325815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue4.3e-12
Seed eggNOG ortholog67593.Physo131457
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size3296
Cds size1164
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14223.1prot_P-fluviatile_contig78.14223.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 323083..324610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817207.2475452-UTR-P-fluviatile_contig78:321311..3230821622817207.2475452-UTR-P-fluviatile_contig78:321311..323082Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 321312..323082 -
1693571513.8603537-UTR-P-fluviatile_contig78:321311..3230821693571513.8603537-UTR-P-fluviatile_contig78:321311..323082Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 321312..323082 -
1622817207.2905526-UTR-P-fluviatile_contig78:324610..3246721622817207.2905526-UTR-P-fluviatile_contig78:324610..324672Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 324611..324672 -
1693571513.9015481-UTR-P-fluviatile_contig78:324610..3246721693571513.9015481-UTR-P-fluviatile_contig78:324610..324672Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 324611..324672 -
1622817207.3003852-UTR-P-fluviatile_contig78:324734..3248931622817207.3003852-UTR-P-fluviatile_contig78:324734..324893Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 324735..324893 -
1693571513.911019-UTR-P-fluviatile_contig78:324734..3248931693571513.911019-UTR-P-fluviatile_contig78:324734..324893Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 324735..324893 -
1622817207.3126273-UTR-P-fluviatile_contig78:325639..3257091622817207.3126273-UTR-P-fluviatile_contig78:325639..325709Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 325640..325709 -
1693571513.923768-UTR-P-fluviatile_contig78:325639..3257091693571513.923768-UTR-P-fluviatile_contig78:325639..325709Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 325640..325709 -
1622817207.3247683-UTR-P-fluviatile_contig78:325745..3258151622817207.3247683-UTR-P-fluviatile_contig78:325745..325815Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 325746..325815 -
1693571513.9333122-UTR-P-fluviatile_contig78:325745..3258151693571513.9333122-UTR-P-fluviatile_contig78:325745..325815Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 325746..325815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817207.2604392-CDS-P-fluviatile_contig78:323082..3232831622817207.2604392-CDS-P-fluviatile_contig78:323082..323283Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 323083..323283 -
1693571513.8721259-CDS-P-fluviatile_contig78:323082..3232831693571513.8721259-CDS-P-fluviatile_contig78:323082..323283Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 323083..323283 -
1622817207.27057-CDS-P-fluviatile_contig78:323618..3245661622817207.27057-CDS-P-fluviatile_contig78:323618..324566Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 323619..324566 -
1693571513.8824205-CDS-P-fluviatile_contig78:323618..3245661693571513.8824205-CDS-P-fluviatile_contig78:323618..324566Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 323619..324566 -
1622817207.2806513-CDS-P-fluviatile_contig78:324595..3246101622817207.2806513-CDS-P-fluviatile_contig78:324595..324610Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 324596..324610 -
1693571513.8929253-CDS-P-fluviatile_contig78:324595..3246101693571513.8929253-CDS-P-fluviatile_contig78:324595..324610Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 324596..324610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14223.1

>prot_P-fluviatile_contig78.14223.1 ID=prot_P-fluviatile_contig78.14223.1|Name=mRNA_P-fluviatile_contig78.14223.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=388bp
MRAGRDEAFSESKGSVGAPSTTAARDADVGGGREACRSSSNSSSSDGGGD
GSNTSHGDSRSSSGSATDVPVLPPTEDRRLDNPGGGDSFETVMSRPRLRL
APPPSLRRREADADANVAQVGERRWLMDPAVEDTILYQAAKWCGRTLLPL
AQEDEILRKWALDGLVEERAKEFRFEREQIFDLEHDPETTDPEPANAFER
AMASSELSVDSDSPIGKLPSDVEPVPLTMPQADGSHFSNRWKQAREAEMR
GFLDSGTFSCGSEIPVGRRPVGTKWVFSFKVDKNGKIVKLKARLVARGFS
QIPNVDFTHSSSPCPSAASIKGCSELLATLNKKFPTKDLGECRWFDGCGI
DRDLEAGTLKLTQTAYTECFEAFRSRLCVRGSHFPLC*
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mRNA from alignment at P-fluviatile_contig78:321312..325815-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14223.1 ID=mRNA_P-fluviatile_contig78.14223.1|Name=mRNA_P-fluviatile_contig78.14223.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4504bp|location=Sequence derived from alignment at P-fluviatile_contig78:321312..325815- (Porterinema fluviatile SAG_2381)
CCGCTTAGACGAGTCCGACACTGCCTGTGCCATTATTGCCCCGGGGTCTG
CGAAAGCGACCAACACCCCCGTTGACATCAACACTTACTACATGTCGCAC
GGCCAGACGCTGGATGGGGAGCTCCGCCCATGCCTAGGATGCTCAATGTC
GAAGGGGGTCGCTAAGGGCACCAGGAGCAAGACGACGAGACGTGCAGCTA
AGAAGTTTCAACGTCTCTTCGTCGACCTTAGCGGCAGAGCTCGGGTTCGC
AGTCTAGGGGGGGCGGAGTACTCTATGATCGTGAGAGACGATGCTACTCG
GTGGTCACGCATGTTCTTTATGCCGAACAAATCAAACGCGCACAAGAGAT
TCGAAGAGTTTATGGCTGAAAACCGCAGGCACGGGACCCCGGGGGTAGTA
GAGGTTGTGCACTCGGACAACGGTGGGGAGTTCGATGGTGAAGAATTCAG
CGCAGTGTGTTTGAAACACTCCATTCGGCAAGAATTCTCTCCCCCCCACA
CTCCGGAGTACAACGGCGTCGCAGAGAGGGGGCTTGCTCTGATAAAAGAT
GCGGGAGCAGCCGCGTACGTTCAGGCGTTGGAGATGTATCCGGACGCCCC
GCAAATCGCTGGACTTTGGGCTGGCAAGCTTGGGCGTGCAATTCGCTCAA
CTGCACGGCCACAACCGCCAACCCAGGGATGAAGACTCCATACGAAATGG
TATATGGCACCCCGCCCCCGCCGGGGGCGACTTATCCCTTCCTCGCGCCC
GCCGTTTTCAAGGTCAAGCGCGACCGTAAGACCCACCTCAAAGGCCAGAA
AGGCTGGTACCTTGGGCCGGCGATAAACCACCCCAGAGACTGCGTGCGCA
TGCTCACTGAAAAGCGTACAGTAGTCATCACCCGAAACTTCACTTGGCGT
TCCTTCTTCGTCGCCTTCCCAGCTGCTGCCCCCCTCAGATGACGGGGATG
ACGAAGGGGACTACGAAGGATCACGCCGAGGAGGGAGGGTGGGAGGAGAG
CGCGATGCGATCCTCGACGTGGTTTTGAGGCCCGCGTGGCCGTTGCCGGC
GCCGCCGGCGCCGGCCGACCCCCGCAGTGGAGCCGGGGGGGGCGCAGTAG
CTGCGCCCGGGCCGGCGTCGCCGCCGGCCAACCCCCGCGGCAGAAGCGGG
GAGGGCGCGGGAGTAGCGCCCTGGTCGTCGTCGTCTTCGTCGGTCGGCCC
CCGCGATGAGAGCGGGGAGGGCGCGGGAGCGGCGCCCGGGAGCGGGGAGG
ACGAGGCCTTCTCCGAGAGCAAGGGCTCGGTAGGGGCCCCCTCGACCACG
GCGGCGAGAGATGCCGACGTGGGCGGCGGCCGTGAGGCCTGCCGCAGCAG
CAGCAATAGCAGCAGCAGCGACGGCGGCGGTGACGGCAGTAATACCAGCC
ACGGCGACAGTCGCAGCAGCAGCGGGAGTGCAACGGATGTACCCGTTCTC
CCGCCGACGGAAGACCGGAGGCTCGACAATCCTGGTGGCGGGGATTCGTT
CGAGACGGTGATGAGCCGCCCCCGCCTCCGCCTTGCCCCGCCCCCTAGCT
TGAGGCGCAGAGAGGCCGACGCCGACGCCAACGTGGCGCAGGTCGGCGAG
CGGCGGTGGTTGATGGATCCGGCAGTCGAAGATACTATTTTGTACCAAGC
TGCGAAGTGGTGCGGGCGTACCCTGCTTCCTCTGGCGCAGGAGGATGAAA
TTCTGCGCAAGTGGGCTCTGGACGGGCTAGTAGAGGAGCGCGCGAAGGAG
TTTCGTTTCGAGCGCGAGCAGATCTTCGACCTCGAACACGACCCTGAAAC
GACGGATCCTGAACCAGCGAACGCCTTTGAGAGAGCAATGGCGTCCTCTG
AGCTAAGCGTTGACTCTGATTCCCCCATTGGGAAACTTCCGAGTGACGTT
GAACCGGTTCCCCTTACAATGCCCCAGGCCGATGGGTCGCACTTTTCAAA
TCGATGGAAACAGGCCAGGGAGGCAGAAATGCGAGGGTTTTTGGATTCAG
GGACTTTTTCGTGTGGTTCAGAGATTCCGGTAGGGCGTAGGCCTGTTGGT
ACGAAGTGGGTTTTTAGCTTCAAAGTGGATAAAAACGGGAAGATTGTCAA
ACTCAAGGCTCGTCTTGTTGCGAGGGGTTTCTCACAGATTCCCAACGTCG
ACTTTACCCATTCGTCCTCCCCGTGCCCTTCGGCGGCGTCAATCAAAGTA
GTGCTTGCATTCGCGAATGAGATGGATATGGTGTTAAAGCATTTCGATGT
CGAGCAGGCGTCATCCACGCGCCGCTGAACCACGATGTCTGGTTGAGGTT
AATCAGTGGTTGTGGCAGTCTTTCCCACAAGGTCGTGAAGGCAGAGCGTG
CAATCTATGGCCTCAAGCAGAGCGGTCGTGAGTGGAGTTTTCATGCGGCT
GGTACGCTGGTCGAAAACGGGTTCGAGCAGAGCAAGGCGGACCCGTGCAT
TTTCCGAAAGATAGTTGGCGGCGTGGTTGTGATGATTATTGCGATTTACG
TTGACGATATCATGGTGGCGGGGACTGAAAAGGGATGCAGCGAGTTGCTG
GCTACCCTCAACAAGAAGTTCCCCACAAAAGATTTGGGAGAGTGCCGTTG
GTTTGATGGTTGTGGTATCGACAGGGACCTGGAGGCAGGCACCCTGAAGC
TTACCCAGACCGCCTACACAGAGTGTTTTGAAGCGTTTCGAAGTCGACTC
TGTGTCCGAGGTTCCCATTTCCCCTTGTGCTGACCTAGGTCCAAGGCGTG
ATGGGGAGAGCAGCGGCGATTGGCCGGTGAGGCAGGCGGTTGGTTCCATG
ATGTGGTTGTCAACAAACTCGAGGGCAGATGATATATCCTATGCCCTGCG
AACGGTGGCAAAGCATGCACACAACCCCACTGAACGACACTGGAGAGGGA
TCCAAAAGATTCTGGCGTACTTGAACGGGACGAAGGATTTGGGTCTGACG
TTTGTGAAGGGTTCCGGGTTGCAGTTGACGGTGTATGTCGATGCGAGCTA
CGCGAACGACCCGTCGGATAGGCGTTCGGTGTCCGGGCTGGCGGCGTTTC
TCGGGGGTGCCGTCGTGAGCCACAAGAGTGCGACGCAGCCGATTATCGCG
CAGTCATCAGCAGAGGCAGAGTACATTGCCGCCGGAGCGGGCGTGAACGA
GGCGTTGTTTGTGCAGCATGTGCTTTCGTTCATTGCGCCTGAAACGAGCA
AGAGTGTGATCAAGATCCTCGAGGACAATGAGGGGGCGATGGCGTTGGTG
CAGAACCCTCTCAGCTCGGGGCGCAGCAAGCACATCGACGTGCGGTTTCA
TTTCATTCGAGAGTTGTTCAGGTCGGGGACGATTTCGATAGAGCATGTCA
GCACGGAGAACCAGCACGCCGACGTCCTCACGAAGGCGCTTAGTAAGTCG
TTGTTTCAGAAACACCGGGCAGCTTTCATGAATTTGCCGGTGTAGCTGTT
TTTGATTTTGGCTCAACAAGGTCAGATTACGTTATGCAGCGAGACTCTGC
CTTTGACCTGCTTGGGAGCGCCCGTCGGAGTCTTGTGTGACAGCGACGGT
TTTTGTTTGGGATTTTTGTAGGGTTTTCGCCCGGAGGCCGGGTTTTCCTC
TCGACTATCGTCTTGTTCTTGATGTTTTTCGACGTATCCAGGGCGGTTTG
CCCACTGAAAGTCCGGCACTTGCGTGCGGGACTAGGGAGGGTGTTCGTGG
GTAGCACGGACAGGTTGGATATATCGGCTTGACGGATTCATGTCGCACTG
TGGGTGGTGTTCTGAGAGGGGGGTACGGACGACGCATTCGCCGTGCCCCC
GGCAGCCGACGCCGCGGTGTGCTCTCTCTCTTCTGTCGTGAGAGTCCCTC
TCTTGGCCCTTGCTGTTTGGCCACATCCCGTGACTTAATAAGACTATTAA
ACCATTCTTCTGGGAGCGAATAAGCGATATACGAACAGCTGTTTCGTGAT
AGTTTCCTGTCGCTGTGTAGTCTACCTCTCTTGTTCACGTATTATTAGTC
TGCGGTAATCATGCTGCTGGCATTTTTGGGATTATATTTGGAACAAATGT
ACAGGAGACGATAGATACAGCAGCAAAAGTGTATTCTCAGTCTCCTGCAC
AAAGTCGTGAATCTTAGATTTTTCCATCGAAAGTTGTGAAGATTCATGAT
AACCACAACTTAGATCTCCTGCACAAAGGCGTGAATCTTAGATTTTTCCA
ACGAAAGTTGTGAAGATTCGAAAGCTTTCAATGATCCGTTCATACATGCG
TTGGAAGAGCTTGAAAGAGCCTGAATTGGAAGAGGAAAGAAACTTCCATC
TGACGGCCACCCGTGTCTGCTTTCGACTGCTCTCGTGCATGCTCAATTTG
CAGATGATGAAACTACACCCTCCCCCACACCGTCAATCTTAGATTTTTTC
CGACGTGTTGAACGAACCGTCTTCCGCACGTTTTCTCTTGGGTTTGACGA
AACGGGTTCGGGGTTGGGACTGTTGTGAATTTAATAAAACGCCCGGTGAT
TGGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:321312..325815-

>mRNA_P-fluviatile_contig78.14223.1 ID=mRNA_P-fluviatile_contig78.14223.1|Name=mRNA_P-fluviatile_contig78.14223.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2328bp|location=Sequence derived from alignment at P-fluviatile_contig78:321312..325815- (Porterinema fluviatile SAG_2381)
ATGAGAGCGGGGAGGATGAGAGCGGGGAGGGACGAGGCCTTCTCCGAGAG
CAAGGGCTCGGTAGGGGCCCCCTCGACCACGGCGGCGAGAGATGCCGACG
TGGGCGGCGGCCGTGAGGCCTGCCGCAGCAGCAGCAATAGCAGCAGCAGC
GACGGCGGCGGTGACGGCAGTAATACCAGCCACGGCGACAGTCGCAGCAG
CAGCGGGAGTGCAACGGATGTACCCGTTCTCCCGCCGACGGAAGACCGGA
GGCTCGACAATCCTGGTGGCGGGGATTCGTTCGAGACGGTGATGAGCCGC
CCCCGCCTCCGCCTTGCCCCGCCCCCTAGCTTGAGGCGCAGAGAGGCCGA
CGCCGACGCCAACGTGGCGCAGGTCGGCGAGCGGCGGTGGTTGATGGATC
CGGCAGTCGAAGATACTATTTTGTACCAAGCTGCGAAGTGGTGCGGGCGT
ACCCTGCTTCCTCTGGCGCAGGAGGATGAAATTCTGCGCAAGTGGGCTCT
GGACGGGCTAGTAGAGGAGCGCGCGAAGGAGTTTCGTTTCGAGCGCGAGC
AGATCTTCGACCTCGAACACGACCCTGAAACGACGGATCCTGAACCAGCG
AACGCCTTTGAGAGAGCAATGGCGTCCTCTGAGCTAAGCGTTGACTCTGA
TTCCCCCATTGGGAAACTTCCGAGTGACGTTGAACCGGTTCCCCTTACAA
TGCCCCAGGCCGATGGGTCGCACTTTTCAAATCGATGGAAACAGGCCAGG
GAGGCAGAAATGCGAGGGTTTTTGGATTCAGGGACTTTTTCGTGTGGTTC
AGAGATTCCGGTAGGGCGTAGGCCTGTTGGTACGAAGTGGGTTTTTAGCT
TCAAAGTGGATAAAAACGGGAAGATTGTCAAACTCAAGGCTCGTCTTGTT
GCGAGGGGTTTCTCACAGATTCCCAACGTCGACTTTACCCATTCGTCCTC
CCCGTGCCCTTCGGCGGCGTCAATCAAAGACGAGGCCTTCTCCGAGAGCA
AGGGCTCGGTAGGGGCCCCCTCGACCACGGCGGCGAGAGATGCCGACGTG
GGCGGCGGCCGTGAGGCCTGCCGCAGCAGCAGCAATAGCAGCAGCAGCGA
CGGCGGCGGTGACGGCAGTAATACCAGCCACGGCGACAGTCGCAGCAGCA
GCGGGAGTGCAACGGATGTACCCGTTCTCCCGCCGACGGAAGACCGGAGG
CTCGACAATCCTGGTGGCGGGGATTCGTTCGAGACGGTGATGAGCCGCCC
CCGCCTCCGCCTTGCCCCGCCCCCTAGCTTGAGGCGCAGAGAGGCCGACG
CCGACGCCAACGTGGCGCAGGTCGGCGAGCGGCGGTGGTTGATGGATCCG
GCAGTCGAAGATACTATTTTGTACCAAGCTGCGAAGTGGTGCGGGCGTAC
CCTGCTTCCTCTGGCGCAGGAGGATGAAATTCTGCGCAAGTGGGCTCTGG
ACGGGCTAGTAGAGGAGCGCGCGAAGGAGTTTCGTTTCGAGCGCGAGCAG
ATCTTCGACCTCGAACACGACCCTGAAACGACGGATCCTGAACCAGCGAA
CGCCTTTGAGAGAGCAATGGCGTCCTCTGAGCTAAGCGTTGACTCTGATT
CCCCCATTGGGAAACTTCCGAGTGACGTTGAACCGGTTCCCCTTACAATG
CCCCAGGCCGATGGGTCGCACTTTTCAAATCGATGGAAACAGGCCAGGGA
GGCAGAAATGCGAGGGTTTTTGGATTCAGGGACTTTTTCGTGTGGTTCAG
AGATTCCGGTAGGGCGTAGGCCTGTTGGTACGAAGTGGGTTTTTAGCTTC
AAAGTGGATAAAAACGGGAAGATTGTCAAACTCAAGGCTCGTCTTGTTGC
GAGGGGTTTCTCACAGATTCCCAACGTCGACTTTACCCATTCGTCCTCCC
CGTGCCCTTCGGCGGCGTCAATCAAAGGATGCAGCGAGTTGCTGGCTACC
CTCAACAAGAAGTTCCCCACAAAAGATTTGGGAGAGTGCCGTTGGTTTGA
TGGTTGTGGTATCGACAGGGACCTGGAGGCAGGCACCCTGAAGCTTACCC
AGACCGCCTACACAGAGTGTTTTGAAGCGTTTCGAAGTCGACTCTGTGTC
CGAGGTTCCCATTTCCCCTTGTGCTGAGGATGCAGCGAGTTGCTGGCTAC
CCTCAACAAGAAGTTCCCCACAAAAGATTTGGGAGAGTGCCGTTGGTTTG
ATGGTTGTGGTATCGACAGGGACCTGGAGGCAGGCACCCTGAAGCTTACC
CAGACCGCCTACACAGAGTGTTTTGAAGCGTTTCGAAGTCGACTCTGTGT
CCGAGGTTCCCATTTCCCCTTGTGCTGA
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