mRNA_P-fluviatile_contig78.14220.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14220.1
Unique NamemRNA_P-fluviatile_contig78.14220.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig78.14220.1 vs. uniprot
Match: A0A6H5JNA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA9_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.070e-7
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 2 
Query:   83 MVQPT---PPRT-DPVLAEAIHLADVAGAQITDTEVAALAVGVLAPTDLVEPLVTTGGGK 250
            MVQPT   P RT DP + EAI LAD+AGA+I DTEVAALA GV+AP+DLV P+      K
Sbjct:    1 MVQPTDEAPTRTGDPAVGEAIELADLAGARIKDTEVAALAAGVMAPSDLVAPVTNREASK 60
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BLAST of mRNA_P-fluviatile_contig78.14220.1 vs. uniprot
Match: D8LTG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG9_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.920e-7
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:   83 MVQPTP----PRTDPVLAEAIHLADVAGAQITDTEVAALAVGVLAPTDLVEPLVTTGGGK 250
            MVQPT     P  DP + EAI LAD+AGA+I DTEVAALA GV+AP+DLV P+      K
Sbjct:    1 MVQPTEEAPTPTGDPAVVEAIELADLAGARIKDTEVAALAAGVMAPSDLVRPVANGEASK 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNA9_9PHAE1.070e-761.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LTG9_ECTSI1.920e-758.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:312978..314791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size452
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14220.1prot_P-fluviatile_contig78.14220.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 313012..314709 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.2993383-UTR-P-fluviatile_contig78:312977..3130111622817203.2993383-UTR-P-fluviatile_contig78:312977..313011Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 312978..313011 -
1693571506.802366-UTR-P-fluviatile_contig78:312977..3130111693571506.802366-UTR-P-fluviatile_contig78:312977..313011Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 312978..313011 -
1622817203.3437617-UTR-P-fluviatile_contig78:314709..3147911622817203.3437617-UTR-P-fluviatile_contig78:314709..314791Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 314710..314791 -
1693571506.8300045-UTR-P-fluviatile_contig78:314709..3147911693571506.8300045-UTR-P-fluviatile_contig78:314709..314791Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 314710..314791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.3173041-CDS-P-fluviatile_contig78:313011..3132541622817203.3173041-CDS-P-fluviatile_contig78:313011..313254Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 313012..313254 -
1693571506.8122225-CDS-P-fluviatile_contig78:313011..3132541693571506.8122225-CDS-P-fluviatile_contig78:313011..313254Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 313012..313254 -
1622817203.330515-CDS-P-fluviatile_contig78:314616..3147091622817203.330515-CDS-P-fluviatile_contig78:314616..314709Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 314617..314709 -
1693571506.8209121-CDS-P-fluviatile_contig78:314616..3147091693571506.8209121-CDS-P-fluviatile_contig78:314616..314709Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 314617..314709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14220.1

>prot_P-fluviatile_contig78.14220.1 ID=prot_P-fluviatile_contig78.14220.1|Name=mRNA_P-fluviatile_contig78.14220.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=112bp
MVQPTPPRTDPVLAEAIHLADVAGAQITDTEVAALAVGVLAPTDLVEPLV
TTGGGKVPQKEQEQQAAAARAAAAAKRQVESDKESSDGEGKGPQGDEGGR
LERGDGRHGNG*
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mRNA from alignment at P-fluviatile_contig78:312978..314791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14220.1 ID=mRNA_P-fluviatile_contig78.14220.1|Name=mRNA_P-fluviatile_contig78.14220.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1814bp|location=Sequence derived from alignment at P-fluviatile_contig78:312978..314791- (Porterinema fluviatile SAG_2381)
TCTTACACGGTGAATATTTCCCGGTGCTGGGTGGTGTCTCGTTTCTGCAT
CGCATCCTCAAGAGAGGAACAGAGTTGGAGTCATGGTCCAACCAACACCG
CCGCGTACCGACCCTGTCTTGGCGGAAGCGATCCATCTCGCAGACGTCGC
CGGCGCTCAGATTACAGACACTGAGGTGAGTGGGTAAATGGAACGCTTTG
TGTGGACAACGATATATGCAGCTAGTGATCTGAAAGAAAGCGGGCAATGG
CTACTGTACCGCGTGTCCACCCAAATCCACAGCAGACACATGTTTTTGTC
CGAAGGCCGCCCGTATGCGGCGGCAGCAACCTCCCTGTTGTTTGGAGCAA
GATGCCCCTGCCCGACACCTCATCTCTCGATTTTGAGTGTCGCCGAGCTT
CGTGGGCGAGTACTGTCCGCGTGCTCATGAAAAAAAACTCAAAGAGCGAG
AGAGGGGCGAGATGCGTGCGGTGAGATTCTGGGCTTGTGAAAGAGGACAG
AAGCCGCTGCTGCTGTCGACGCCTTGCGTTCGGGCAGGAATAGCTGCATG
CTTAGAACTCGTCCGGGGGGGTGTGTGCTCATGTTTTGCATGCCTTAGTT
GTTAGACCATTGACCACGCGTCCTCGAGAGGACGGAGCATAGAACTCGTC
CGGTGGGGTCGTCGAATTCATTTTTGTTTGGGATTATGATGTCAAATCGG
TAGATCCGCAAAACTCAGACAGTATGAAAGTGTGTTCGTCCGGGGATGGA
TGTGTGGTGACCGCATGCTGCTGCACCCTCGTTGCCCTCTTCATCTCGGA
CACATCTCGTCATCTCGGAAATACACGCATGGCAACAAAGCGGTCGTAAG
GAAGTCACACATATTTCCGCCCACCGCTTGCATCTGCTAGAGCACCATAT
CGTTGCTGCTGGTGGTATTCCCCCTCCCCGTACCGCAGACATGACTGCTT
ATCTCCTGGAGAATGCAATTAGCCCTGTTTAACCGAAGACTGAGGAACCA
GAAACCTAAAGCCACCCCAGCGAGCTTATTTAATATCTTCGGTCGTGTTG
CATGGCACACGATATTTGTGGTTGGCTTGCTCGTCGTGCAGACAACGCAC
CTTCTGCACACGTGGCATGCAAACGTGTCGAACGTTCCCATCTCGCATAC
CGGATGTGAAACAGCAACCAGGTGCACGACAGACATGTTTGCATTACGCC
TACCGTTGCATTTTTCAGTTGTGAAAGTCATGAACTTCAGACCATGCTGC
TGTGGACAGAAGTCCACGAAGACGGCGTTCAGACTCCCGTGTAGATTTTT
GTCCACGCCACCAACAGCCTTGCGAACTCTGTGCGAAGGCTGCAAATATA
TCGTTGTTCTGGTGTTCTGGTATTTGTAATATTGCCAAACTTCGTTTTAT
TCGCACTGCTGTGTAGGAAGTGACTCCTGCACTCCTGTGGGAAGACTCCC
ATCCCCTTGCCAACTTGCGGCGGCCGATGTTTGCTCCTGTTCTCCTGAAT
CTCACACATGCGCACGAATTAAAAAAAAATAAAAAAGGTTGCGGCGCTGG
CAGTCGGCGTCCTCGCTCCTACCGACCTCGTGGAGCCTTTGGTGACGACT
GGCGGGGGGAAAGTGCCGCAGAAGGAGCAGGAGCAGCAGGCTGCCGCAGC
GCGCGCGGCGGCGGCGGCGAAACGGCAGGTGGAGAGCGATAAAGAAAGCT
CGGACGGCGAAGGAAAAGGGCCACAGGGAGATGAAGGGGGCCGTCTGGAA
CGGGGGGACGGGAGGCATGGAAATGGATGAAGAAGAGGATAACGAGGGGG
GGGAGCGGAGCGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:312978..314791-

>mRNA_P-fluviatile_contig78.14220.1 ID=mRNA_P-fluviatile_contig78.14220.1|Name=mRNA_P-fluviatile_contig78.14220.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=672bp|location=Sequence derived from alignment at P-fluviatile_contig78:312978..314791- (Porterinema fluviatile SAG_2381)
ATGGTCCAACCAACACCGCCGCGTACCGACCCTGTCTTGGCGGAAGCGAT
CCATCTCGCAGACGTCGCCGGCGCTCAGATTACAGACACTGAGATGGTCC
AACCAACACCGCCGCGTACCGACCCTGTCTTGGCGGAAGCGATCCATCTC
GCAGACGTCGCCGGCGCTCAGATTACAGACACTGAGGTTGCGGCGCTGGC
AGTCGGCGTCCTCGCTCCTACCGACCTCGTGGAGCCTTTGGTGACGACTG
GCGGGGGGAAAGTGCCGCAGAAGGAGCAGGAGCAGCAGGCTGCCGCAGCG
CGCGCGGCGGCGGCGGCGAAACGGCAGGTGGAGAGCGATAAAGAAAGCTC
GGACGGCGAAGGAAAAGGGCCACAGGGAGATGAAGGGGGCCGTCTGGAAC
GGGGGGACGGGAGGCATGGAAATGGATGAGTTGCGGCGCTGGCAGTCGGC
GTCCTCGCTCCTACCGACCTCGTGGAGCCTTTGGTGACGACTGGCGGGGG
GAAAGTGCCGCAGAAGGAGCAGGAGCAGCAGGCTGCCGCAGCGCGCGCGG
CGGCGGCGGCGAAACGGCAGGTGGAGAGCGATAAAGAAAGCTCGGACGGC
GAAGGAAAAGGGCCACAGGGAGATGAAGGGGGCCGTCTGGAACGGGGGGA
CGGGAGGCATGGAAATGGATGA
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