mRNA_P-fluviatile_contig78.14212.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14212.1
Unique NamemRNA_P-fluviatile_contig78.14212.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig78.14212.1 vs. uniprot
Match: D7FZ51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ51_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 8.100e-15
Identity = 91/257 (35.41%), Postives = 119/257 (46.30%), Query Frame = 1 
Query:   67 MSGKKLPDNWEGDTRFDGPEHWGMDPRWKGLFPKSVMRAGDSSGRNNKLVRRSVSAESYSDDDTVTRDTDDGDDDALTSDKTMATVDISKEYDDEDDDGLDGSGGGSSTGVLSSE-GDGLDATNARVAAAFRTRKTETAPADDLCDDLDWHVLSSRRPRKDAKSTENTSKS-KYKEVGKSSGKSEARAVEAEARRWRQGKVRATEPASSSKADRAVHNRAGLGTPLYVSCAPCPSSDEEGEEEFDESEANITGHERS 831
            M   KLPDNW+ DTRFDGPEHWG++ RWK LFPK+  +     G    +V  S             RD D G   A  +    ATVD++ E             GG  T   S + GD   A   + + A R    ETAP D    + +  + S RRP   AK+T  +  S     +GK+    +      + RRWR  + R+TEPASSS+A     +   L +          SS+      FDESEANITGHER+
Sbjct:    1 MRRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSVGG----IVDTS-------------RDKDGGRSRAKGT--RNATVDMTAE-------------GGDDTVTCSLQSGDDHFANFNQPSRAARRTVPETAPEDP---EEEMRIPSYRRPN--AKTTATSGSSINTSSIGKAPLYEDEEPTTGQ-RRWRI-QPRSTEPASSSRAGSRARDSVLLPS----------SSEXXXXXXFDESEANITGHERN 208
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ51_ECTSI8.100e-1535.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:254696..258054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_006300.1
Exons3
Model size1004
Cds size936
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14212.1prot_P-fluviatile_contig78.14212.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 254696..257988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817206.4049747-CDS-P-fluviatile_contig78:254695..2549911622817206.4049747-CDS-P-fluviatile_contig78:254695..254991Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 254696..254991 -
1693571512.884325-CDS-P-fluviatile_contig78:254695..2549911693571512.884325-CDS-P-fluviatile_contig78:254695..254991Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 254696..254991 -
1622817206.4172397-CDS-P-fluviatile_contig78:255533..2561551622817206.4172397-CDS-P-fluviatile_contig78:255533..256155Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 255534..256155 -
1693571512.8945627-CDS-P-fluviatile_contig78:255533..2561551693571512.8945627-CDS-P-fluviatile_contig78:255533..256155Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 255534..256155 -
1622817206.4288461-CDS-P-fluviatile_contig78:257970..2579881622817206.4288461-CDS-P-fluviatile_contig78:257970..257988Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 257971..257988 -
1693571512.9046407-CDS-P-fluviatile_contig78:257970..2579881693571512.9046407-CDS-P-fluviatile_contig78:257970..257988Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 257971..257988 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817206.4421356-UTR-P-fluviatile_contig78:257988..2580541622817206.4421356-UTR-P-fluviatile_contig78:257988..258054Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 257989..258054 -
1693571512.9141622-UTR-P-fluviatile_contig78:257988..2580541693571512.9141622-UTR-P-fluviatile_contig78:257988..258054Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 257989..258054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14212.1

>prot_P-fluviatile_contig78.14212.1 ID=prot_P-fluviatile_contig78.14212.1|Name=mRNA_P-fluviatile_contig78.14212.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=312bp
MSGKKLPDNWEGDTRFDGPEHWGMDPRWKGLFPKSVMRAGDSSGRNNKLV
RRSVSAESYSDDDTVTRDTDDGDDDALTSDKTMATVDISKEYDDEDDDGL
DGSGGGSSTGVLSSEGDGLDATNARVAAAFRTRKTETAPADDLCDDLDWH
VLSSRRPRKDAKSTENTSKSKYKEVGKSSGKSEARAVEAEARRWRQGKVR
ATEPASSSKADRAVHNRAGLGTPLYVSCAPCPSSDEEGEEEFDESEANIT
GHERSLPLTVLTTPRRRRREDEDDLISDGVPSSTAMLDSRTCSRTKGNGE
RKGGRGLTAGSG
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mRNA from alignment at P-fluviatile_contig78:254696..258054-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14212.1 ID=mRNA_P-fluviatile_contig78.14212.1|Name=mRNA_P-fluviatile_contig78.14212.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3359bp|location=Sequence derived from alignment at P-fluviatile_contig78:254696..258054- (Porterinema fluviatile SAG_2381)
AAAAGTCTCGACGTGCAGGGGATCGCGGCCTGACTTGGATTCCTCCCCCT
GTGACTCGCAACGACTATGTCTGGAAAGAAGCTTGTGAGTAACCCTGAAG
CATGCAGCACTTTTCCACTTGAGGTGCCGTTCAGAGCGTCCAGCCCTGTC
AAGCTCTATCCTTGGTACAGCAGTGTGCGCTGCTGCTGCGGAGAGCCCGC
ATGACGCTATAGGCAACCCGTCGCAGCACGTATATCGACAACCCTGCATG
TCTACTGGCTATTGTTGCTGCTGCATTTCCCGGGTGGTCAACAAGGCTAT
TTTTGTGAAAGAGAGCGAAAATCATGGAGGGAGAGAAAGAAGCTGGATTT
GAATCGAAAAACTTCAAAAATTGAAAATCGCATGTGTGAGCGCCGCACTT
TCGGTCGAGGGTGATGCCAAACCGCAAATTTTGCCGCACAAGGCTGCCAC
ACACGCATCTGCGACAAATATGGTAGTGTAAATGTTGCGTTGCATCTCAG
ATGGGAATGATAGTTCAGCTCTCTCGTTGCATATAATATCTCTCAACACA
AGAAATGCAGTGCTGAAATTGAGTTTGAAAATGGGGCGAAGGTGTAGTTG
GGGTTAGCAAGCTCTTGCGGCACATGAGCTGGGGGCATTCTACAGAGAGA
AGGAATGGGAAGTGGGGAAAGGTATACATTCGTTTCCTCTTTTGTGTCGT
TCTAGCGGCTGTGGATTCAGGACGTCATTGTGAGCTCCATTGCCGTCAAG
GAAAACGTCTGACGGAAGATAGCGCGCCCCCGATGGCAATCTGCTGGCAT
TTCCAAGATGTTGCCAAGATTATAATATCACCGCGAAGATTGTTTGATTT
GTTGTTGATGCCATTTCTTGCGAAAGCCGTGGATGAAAGCAGCACCGGCC
ACGGAGGACCCGCAATCGAGTGTAGTCACGAAGGGGGTTTGGTGACCACG
AGGAGGTAATGATGCAATGTACAGCAAATGTGTGACACGAAGGACATCGT
GGCAACAGGGAGGAGCTGACACGCCCTGCCCCATTGATCTTCCCGCGGTT
GCTTGTCACCTTCATCCCCATAAGGTGTGTTGACGGCGGCGAGGGGGGCG
ATGGCAGCAAGGGGTTGCGGTATTACTTGTCCGCAGATGATCTCGTGCTG
CCCGTATTATTGTCATTTCTTGTTCTACACTGCAGTGGTGAAATCGCGAA
AGAATCGAATGGGGACGAAAGGGATGCTCCCAGTAGGCACAGGCAGTTCT
GCTCGTCGCGTGGGACGCACCCGTTCAAGTAGTCAGCGCCAACAGGCCTG
CATTGAACGAAAGAAGTTGGTTTATGGCAGAACCCAGGTAGCTTCTGCGG
ATTCGTCTATTTGTAGGCCGGACACGAGCCTAGCAAGCTTGGTCGTCACA
TGGTATCTGGTCGCGGCTTGTGCACCAAGTGGCAGAGCGCGGCGAGTTGC
AGCATAGTTCGAGGGCCGATACAAAGGGGTCTGAGGAAGGCGATTACTCG
AAGCAAGGCCGCCTAAAATCGTTTACTCTCGCCTGTATATTTCCCTGTTC
GGTTTTAAGGCGGTTGCTCGATGTAAGGCGGTTGTTTTCAGGTGCTACAC
CATCCCCGTGTTTCCAGTTTCGAGTCGCCACAAACCAGCAAGGCATGCAT
GCTGAGCTCACAACGACTGCAGGACAGTCCCCTCGTCAAGAAATCATATG
CGACAGACTTTTTTGAAATCTTGGAATGTCTGCACATAAAGCTACACTCT
CATTGATTACCCGTAGAGCTCTCAGAGCTCGCATTCCGATCATCCTCTGG
TAAACTTCAACAATCCCTTACCCTTCGCCGAATAGACTTCAACCCGAAGC
TCTCTGACCTCCGAACTACTCTTTACTTGTCCGTTTTCGTTGTCTTCAGC
CCGACAACTGGGAGGGAGACACCCGATTCGACGGGCCGGAACACTGGGGC
ATGGACCCGCGATGGAAGGGCCTGTTTCCCAAAAGCGTCATGAGGGCAGG
CGACAGCAGCGGCAGAAACAACAAGCTCGTACGCAGAAGCGTTTCAGCGG
AGAGCTACAGCGACGATGACACAGTTACGCGAGACACGGATGATGGTGAC
GATGATGCTCTAACTAGCGACAAGACGATGGCGACGGTTGATATCAGTAA
GGAATACGACGACGAAGACGACGACGGGCTCGATGGTTCTGGTGGTGGCA
GCAGCACAGGCGTGCTGAGCAGCGAGGGCGACGGTCTCGACGCAACCAAC
GCTCGCGTCGCTGCAGCTTTCAGGACCAGAAAAACCGAAACTGCACCAGC
AGACGATCTCTGCGACGACTTAGATTGGCACGTTCTTTCCTCTAGAAGAC
CAAGAAAGGACGCCAAGAGCACGGAGAACACCAGCAAGAGCAAGTACAAG
GAAGTCGGCAAGAGCAGCGGCAAAAGCGAGGCACGTGCGGTGGAGGCTGA
GGCGAGAAGGTGGAGGCAAGGAAAAGTCAGAGCCACCGAGCCTGCTTCCA
GCTCCAAGGCGGACCGGGCGGGTGAGTGAGCAACACGAGTCGATGTTGAT
TTGTCGAATGGTGATGCACCCGATAGGTATGTTTAGAATATGTCCCGACT
AACTTCGTGCTAGTGATTTGTCGAATGCTGATTGTCGAATGCTGATTTGT
CGAATGTTTTTTGTGGGACGTCTCGAGACAAAGCCGTACGTACCCGCCAG
GCAAGCCACACGAACATGTAAGCATTGAGGAGCGACAGCTGTCCTTCTTT
CTCACTTGTGTTAAGTCTGCATTTTTCATTTCATGCTGGGTTGAACCCAT
GACAACCTGGACTCGTGCCTTTCACTCAACGTTGTTGGAGGCTCGGTTTG
GGGGTACTGGCCGGCAAACTTCCCCTCCCTGTAGCAATACCGCCGGCGTA
TTTTTGAAGCGCTGCGCTAAGCCCCTGACTCGTACTCCAATTATCTCGCT
CCCTCATTCCCACCGTTGCCTTCGCCCTCCCTCCCTCCCTCCTTCTCTGC
AATCCCCCTCCCATCACCATCCCTTCATTTTTACTTTTTTTTTCTTGCAT
CCTTGCTGCGCAGTGCACAACCGCGCGGGGCTCGGAACCCCTCTGTACGT
CTCGTGCGCCCCGTGCCCCTCTTCCGACGAAGAGGGAGAGGAGGAGTTCG
ACGAAAGCGAGGCCAATATCACGGGCCACGAGCGGAGTCTCCCCTTGACC
GTTCTCACCACACCCCGCCGCCGCCGGCGGGAGGACGAGGACGACTTAAT
CAGTGACGGGGTCCCCTCTTCGACCGCGATGCTCGACAGTAGGACCTGCA
GCAGGACGAAGGGGAATGGAGAACGCAAGGGAGGGCGGGGACTGACGGCG
GGAAGTGGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:254696..258054-

>mRNA_P-fluviatile_contig78.14212.1 ID=mRNA_P-fluviatile_contig78.14212.1|Name=mRNA_P-fluviatile_contig78.14212.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1872bp|location=Sequence derived from alignment at P-fluviatile_contig78:254696..258054- (Porterinema fluviatile SAG_2381)
ATGTCTGGAAAGAAGCTTATGTCTGGAAAGAAGCTTCCCGACAACTGGGA
GGGAGACACCCGATTCGACGGGCCGGAACACTGGGGCATGGACCCGCGAT
GGAAGGGCCTGTTTCCCAAAAGCGTCATGAGGGCAGGCGACAGCAGCGGC
AGAAACAACAAGCTCGTACGCAGAAGCGTTTCAGCGGAGAGCTACAGCGA
CGATGACACAGTTACGCGAGACACGGATGATGGTGACGATGATGCTCTAA
CTAGCGACAAGACGATGGCGACGGTTGATATCAGTAAGGAATACGACGAC
GAAGACGACGACGGGCTCGATGGTTCTGGTGGTGGCAGCAGCACAGGCGT
GCTGAGCAGCGAGGGCGACGGTCTCGACGCAACCAACGCTCGCGTCGCTG
CAGCTTTCAGGACCAGAAAAACCGAAACTGCACCAGCAGACGATCTCTGC
GACGACTTAGATTGGCACGTTCTTTCCTCTAGAAGACCAAGAAAGGACGC
CAAGAGCACGGAGAACACCAGCAAGAGCAAGTACAAGGAAGTCGGCAAGA
GCAGCGGCAAAAGCGAGGCACGTGCGGTGGAGGCTGAGGCGAGAAGGTGG
AGGCAAGGAAAAGTCAGAGCCACCGAGCCTGCTTCCAGCTCCAAGGCGGA
CCGGGCGGCCCGACAACTGGGAGGGAGACACCCGATTCGACGGGCCGGAA
CACTGGGGCATGGACCCGCGATGGAAGGGCCTGTTTCCCAAAAGCGTCAT
GAGGGCAGGCGACAGCAGCGGCAGAAACAACAAGCTCGTACGCAGAAGCG
TTTCAGCGGAGAGCTACAGCGACGATGACACAGTTACGCGAGACACGGAT
GATGGTGACGATGATGCTCTAACTAGCGACAAGACGATGGCGACGGTTGA
TATCAGTAAGGAATACGACGACGAAGACGACGACGGGCTCGATGGTTCTG
GTGGTGGCAGCAGCACAGGCGTGCTGAGCAGCGAGGGCGACGGTCTCGAC
GCAACCAACGCTCGCGTCGCTGCAGCTTTCAGGACCAGAAAAACCGAAAC
TGCACCAGCAGACGATCTCTGCGACGACTTAGATTGGCACGTTCTTTCCT
CTAGAAGACCAAGAAAGGACGCCAAGAGCACGGAGAACACCAGCAAGAGC
AAGTACAAGGAAGTCGGCAAGAGCAGCGGCAAAAGCGAGGCACGTGCGGT
GGAGGCTGAGGCGAGAAGGTGGAGGCAAGGAAAAGTCAGAGCCACCGAGC
CTGCTTCCAGCTCCAAGGCGGACCGGGCGGTGCACAACCGCGCGGGGCTC
GGAACCCCTCTGTACGTCTCGTGCGCCCCGTGCCCCTCTTCCGACGAAGA
GGGAGAGGAGGAGTTCGACGAAAGCGAGGCCAATATCACGGGCCACGAGC
GGAGTCTCCCCTTGACCGTTCTCACCACACCCCGCCGCCGCCGGCGGGAG
GACGAGGACGACTTAATCAGTGACGGGGTCCCCTCTTCGACCGCGATGCT
CGACAGTAGGACCTGCAGCAGGACGAAGGGGAATGGAGAACGCAAGGGAG
GGCGGGGACTGACGGCGGGAAGTGGATGCACAACCGCGCGGGGCTCGGAA
CCCCTCTGTACGTCTCGTGCGCCCCGTGCCCCTCTTCCGACGAAGAGGGA
GAGGAGGAGTTCGACGAAAGCGAGGCCAATATCACGGGCCACGAGCGGAG
TCTCCCCTTGACCGTTCTCACCACACCCCGCCGCCGCCGGCGGGAGGACG
AGGACGACTTAATCAGTGACGGGGTCCCCTCTTCGACCGCGATGCTCGAC
AGTAGGACCTGCAGCAGGACGAAGGGGAATGGAGAACGCAAGGGAGGGCG
GGGACTGACGGCGGGAAGTGGA
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