mRNA_P-fluviatile_contig78.14208.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14208.1
Unique NamemRNA_P-fluviatile_contig78.14208.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:223493..226263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1579
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14208.1prot_P-fluviatile_contig78.14208.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 224199..225002 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.6937006-UTR-P-fluviatile_contig78:223492..2241981622817203.6937006-UTR-P-fluviatile_contig78:223492..224198Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 223493..224198 -
1693571507.203506-UTR-P-fluviatile_contig78:223492..2241981693571507.203506-UTR-P-fluviatile_contig78:223492..224198Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 223493..224198 -
1622817203.7161636-UTR-P-fluviatile_contig78:225002..2250181622817203.7161636-UTR-P-fluviatile_contig78:225002..225018Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 225003..225018 -
1693571507.224618-UTR-P-fluviatile_contig78:225002..2250181693571507.224618-UTR-P-fluviatile_contig78:225002..225018Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 225003..225018 -
1622817203.7263048-UTR-P-fluviatile_contig78:226210..2262631622817203.7263048-UTR-P-fluviatile_contig78:226210..226263Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 226211..226263 -
1693571507.235297-UTR-P-fluviatile_contig78:226210..2262631693571507.235297-UTR-P-fluviatile_contig78:226210..226263Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 226211..226263 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.704722-CDS-P-fluviatile_contig78:224198..2250021622817203.704722-CDS-P-fluviatile_contig78:224198..225002Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 224199..225002 -
1693571507.2145329-CDS-P-fluviatile_contig78:224198..2250021693571507.2145329-CDS-P-fluviatile_contig78:224198..225002Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 224199..225002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14208.1

>prot_P-fluviatile_contig78.14208.1 ID=prot_P-fluviatile_contig78.14208.1|Name=mRNA_P-fluviatile_contig78.14208.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=268bp
MVARCKEGCGRDASHGLIGTKARTHCARCASPSMINLKSPTCAGDECTKR
ASKAFLGTKIALFCAVHASAGMVDVRSRLCMGSRCKKQPSKVAPGDTVAR
FCLDHAPEGSVTARKKGKMARKRPGSFAKIAGRAEQDQEHDRRVRAKKRQ
RIVVGASTAPGEVVLQPSTLLLLMRRADLNKGNLGNFAPISSSSGTCEHG
GRAKSLMDKSNDAAFTGSSGGRAPDSRNGVGVAGEGGKDGRTGRPRRTGG
GTARRDAAAALLALLPS*
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mRNA from alignment at P-fluviatile_contig78:223493..226263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14208.1 ID=mRNA_P-fluviatile_contig78.14208.1|Name=mRNA_P-fluviatile_contig78.14208.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2771bp|location=Sequence derived from alignment at P-fluviatile_contig78:223493..226263- (Porterinema fluviatile SAG_2381)
GTCCGGCAGCTCCACTTCTTCGAGTTTCCCCGCCGTCATTCCCTTTCAAC
CAGGTGTGTTGCTTGTGAGCTTGTAAATATCACCCGGTGAAATCGCCTCG
CAGAACACGTCGAGCTCGAATTATTGACAAGAGACGAGACACTCCCTCTG
GGATCATGTGGGTGTGTTCAATTGGATACAGGTGTGACACCTCCCAAGGG
TGAAGCAATGCTGTAGGTAGGGATCCTCTGGCGCGCGCTGATCTTCCACG
TTGGGAAAAGTTCTAGCTTTTGCCGAGCGACGGACGAACAGATTGGTGAA
ACATCGATGAAAGCCCACCTTTGTGCAAATACACGCACAAGGCATACTCC
CTCACACAAACAACAGCATACACCCGCAGCAGAATGGCATGCTGTCGCCG
CTTCCATTCCCACACTTCCACACGCAAAGGGCAAACGGCATAGGGCTAAG
ATTTAGTAGACGACGCTTCAAAGCGATGCAGTACACCATCAACGATCCCC
TCCTCGTAGCGACTACAAAAACGATTAGGCAGAGTCACCCCGACCTCCAC
CGTGGCGGGCCGGTTTGCTGTTGCTCCGTCAACGCTGGAGATGCATCCCT
CGCAAAACGCCATTTGAGGCGCTCACCGCGAACCGAACGGTGTTGTATAC
GGAGAGAACAGGACAACGTACATATTGTGGAAAGAAAGGAGATGCTGATG
GCTGTTGTTGGGGGAAGGAGAAACCAAGAACGGAGCATGTCTGTCTCCTC
GTGCTGATAGACTGTTTGACAACGTGAAATAAGTGCTGTCTAGTGCTGAG
TCAATTCCACCGGGCATTTATCGGTTTGCGCGTTCCTCTCCAGCAACGCA
ACTATTTTCGAGGTTCCCGGGAGGAGGACCGAGGCTCAATGCCTGATTTA
GAATGAGGCTGAAACACTCCGACATTCAGCCCAGCACCAGCTCTCGATGA
GGCTCAATCTCCAGCTCTTTGTCACCTGCACACATTTGAAACATCCGATG
GTGCTCTCGCGTAGGGCACCACATTGAACGCACTCAATGATGACAAAAGT
TCTGCATCGACCCGCGGTCCGCGATGTTCAAAGTTTTGCACCTTTAGGCA
AAGTATCTACAGCTGTACACGGATTCGAAGGTCTCGAACAGCACAGCCCT
ATTTTTGGGCACCCGGGCACCACGTTGACGTTTTCATCACTTAGCCCCCT
CCTGATATTTCCAGCCTTCGCTCTCCCTCTCTCTGACCTTCTCAGCAGAC
ACTTCAAGGGGATGGTCGCGCGTTGCAAGGAAGGCTGCGGTCGGGACGCC
TCCCACGGCCTCATCGGCACCAAGGCCCGCACCCATTGTGCTAGGTGCGC
CTCTCCCTCGATGATCAACCTTAAGAGCCCCACCTGCGCCGGAGACGAGT
GCACTAAGCGCGCGTCCAAAGCCTTCCTCGGGACCAAGATCGCCCTCTTC
TGCGCCGTCCACGCCTCGGCGGGCATGGTCGACGTGCGGAGCCGGCTATG
CATGGGTTCGAGATGCAAAAAGCAGCCCTCCAAGGTGGCACCCGGGGATA
CTGTCGCACGGTTTTGCTTAGACCACGCGCCAGAGGGATCCGTGACTGCG
CGAAAGAAGGGCAAGATGGCCCGGAAGAGACCCGGGAGTTTTGCGAAGAT
TGCCGGGAGGGCGGAGCAGGATCAGGAGCATGATCGCCGTGTAAGGGCTA
AGAAACGGCAGCGCATCGTCGTCGGCGCATCCACCGCGCCGGGGGAAGTA
GTGCTGCAGCCGTCCACCCTACTCTTGCTAATGAGGAGAGCGGACTTGAA
CAAGGGCAACCTAGGCAACTTCGCGCCCATCAGCAGCAGCAGTGGGACCT
GTGAGCACGGAGGACGAGCCAAGAGTCTGATGGACAAGTCAAACGACGCA
GCATTCACGGGTAGTAGCGGCGGCCGGGCTCCTGACAGCAGAAATGGAGT
CGGCGTCGCAGGAGAGGGCGGCAAAGACGGCCGGACAGGCCGGCCCCGAA
GGACGGGGGGAGGGACAGCACGCCGAGATGCGGCTGCGGCACTCCTCGCG
CTGCTGCCCTCCTAATTAGGTTGGTTGCGAGGCAACTGGGTGGTGTGGAT
TAGATGGAAATGTGCTGAGGTTTGGTCGCATGCGCGGGATCGTTCACGCC
TGCCTCCTCTTCTGCGTCCACTCGCCCGGCGAGGTGTTGAAAGAAAGACC
GCGAAGGTACGAGACACATCGACTTGGAGCCTTTCGTATCTCGGTGGTCG
ATGTGCACCTCTTGTTGAGGGGCGGCGCGGGCGAGACTGCAGTACCACGA
GGGGCCTAAGCGAGCAGGTAGCGCGATGTAAGAATGGGGGTGGAGTACGT
CCGCGCTTCCGAATGGCAGCAGCAAACACGCCAATGACCGCCGGCAGCAG
GAAGGTGCTATTAATAGCTTTAAGTGCTGCCTGTGATGCTCGTCGATATC
CCCCTGCAGCATGTCTAGTGCACATCTTCTCTGTTTCCTGAACCTTCAGT
CGAGGCCCTTTCGCTTGCGACGTCTTCCTCTCGAGACTGAGTTGAGACAA
TCAAGCTCCCGAATCAACGCACACGGGCATTCGGTGGAAAAGTTGATCTT
AGCTCCGTCTGAGTATTGCCGCCTTGGTAGAGGCAGAATCAACCGTTGTT
GACTGGGGACCTGTCGCTTTTGCCCCTGGCACTTTCGAAATGCTCTGAGT
GTGACGGAGCAAAATGATTCGTGATGTATGCAATGCAAGAAGAGTCATGC
CGACCACTCTGTAAACATTTA
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:223493..226263-

>mRNA_P-fluviatile_contig78.14208.1 ID=mRNA_P-fluviatile_contig78.14208.1|Name=mRNA_P-fluviatile_contig78.14208.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1608bp|location=Sequence derived from alignment at P-fluviatile_contig78:223493..226263- (Porterinema fluviatile SAG_2381)
ATGGTCGCGCGTTGCAAGGAAGGCTGCGGTCGGGACGCCTCCCACGGCCT
CATCGGCACCAAGGCCCGCACCCATTGTGCTAGGTGCGCCTCTCCCTCGA
TGATCAACCTTAAGAGCCCCACCTGCGCCGGAGACGAGTGCACTAAGCGC
GCGTCCAAAGCCTTCCTCGGGACCAAGATCGCCCTCTTCTGCGCCGTCCA
CGCCTCGGCGGGCATGGTCGACGTGCGGAGCCGGCTATGCATGGGTTCGA
GATGCAAAAAGCAGCCCTCCAAGGTGGCACCCGGGGATACTGTCGCACGG
TTTTGCTTAGACCACGCGCCAGAGGGATCCGTGACTGCGCGAAAGAAGGG
CAAGATGGCCCGGAAGAGACCCGGGAGTTTTGCGAAGATTGCCGGGAGGG
CGGAGCAGGATCAGGAGCATGATCGCCGTGTAAGGGCTAAGAAACGGCAG
CGCATCGTCGTCGGCGCATCCACCGCGCCGGGGGAAGTAGTGCTGCAGCC
GTCCACCCTACTCTTGCTAATGAGGAGAGCGGACTTGAACAAGGGCAACC
TAGGCAACTTCGCGCCCATCAGCAGCAGCAGTGGGACCTGTGAGCACGGA
GGACGAGCCAAGAGTCTGATGGACAAGTCAAACGACGCAGCATTCACGGG
TAGTAGCGGCGGCCGGGCTCCTGACAGCAGAAATGGAGTCGGCGTCGCAG
GAGAGGGCGGCAAAGACGGCCGGACAGGCCGGCCCCGAAGGACGGGGGGA
GGGACAGCACGCCGAGATGCGGCTGCGGCACTCCTCGCGCTGCTGCCCTC
CTAAATGGTCGCGCGTTGCAAGGAAGGCTGCGGTCGGGACGCCTCCCACG
GCCTCATCGGCACCAAGGCCCGCACCCATTGTGCTAGGTGCGCCTCTCCC
TCGATGATCAACCTTAAGAGCCCCACCTGCGCCGGAGACGAGTGCACTAA
GCGCGCGTCCAAAGCCTTCCTCGGGACCAAGATCGCCCTCTTCTGCGCCG
TCCACGCCTCGGCGGGCATGGTCGACGTGCGGAGCCGGCTATGCATGGGT
TCGAGATGCAAAAAGCAGCCCTCCAAGGTGGCACCCGGGGATACTGTCGC
ACGGTTTTGCTTAGACCACGCGCCAGAGGGATCCGTGACTGCGCGAAAGA
AGGGCAAGATGGCCCGGAAGAGACCCGGGAGTTTTGCGAAGATTGCCGGG
AGGGCGGAGCAGGATCAGGAGCATGATCGCCGTGTAAGGGCTAAGAAACG
GCAGCGCATCGTCGTCGGCGCATCCACCGCGCCGGGGGAAGTAGTGCTGC
AGCCGTCCACCCTACTCTTGCTAATGAGGAGAGCGGACTTGAACAAGGGC
AACCTAGGCAACTTCGCGCCCATCAGCAGCAGCAGTGGGACCTGTGAGCA
CGGAGGACGAGCCAAGAGTCTGATGGACAAGTCAAACGACGCAGCATTCA
CGGGTAGTAGCGGCGGCCGGGCTCCTGACAGCAGAAATGGAGTCGGCGTC
GCAGGAGAGGGCGGCAAAGACGGCCGGACAGGCCGGCCCCGAAGGACGGG
GGGAGGGACAGCACGCCGAGATGCGGCTGCGGCACTCCTCGCGCTGCTGC
CCTCCTAA
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