mRNA_P-fluviatile_contig78.14197.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14197.1
Unique NamemRNA_P-fluviatile_contig78.14197.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig78.14197.1 vs. uniprot
Match: D7FZ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ62_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 8.900e-28
Identity = 87/212 (41.04%), Postives = 106/212 (50.00%), Query Frame = 1 
Query:    1 MNAPDPSTPVTDGEHWSDETEDSPQGLGYTPLE-YEALD-------------GDEEENTDNGDLDGDAGAERVRGTAPDGASSQQDDLASALLRALESDYQACLESERRLVSNGPVTIDTAVTAADTVAEVSDSIRLRQEXXXXXXQPVTGEKTEEGGVSTAAAEE--------APPRPVSPLGQDRAERVMRAMRGFALAAPARPPARFEA 570
            M+   PSTP TDGEHWSDETE SP+  GY  L+ Y+ L              G EE+ T++       G E       D  +S Q D+AS LLRA+E DY+AC+ESE  +VSNGP+   TA T          + +L         Q                           A  RPVSPLGQDRAERV+RAM+GF LAAP+ PPA FEA
Sbjct:    1 MDTKSPSTPTTDGEHWSDETEGSPEHTGYAALDQYQPLGEEGDEXXXXXXXXGTEEQRTES------VGGEGWPAGVVDVDTSLQPDMASVLLRAMEEDYRACVESEGHVVSNGPIAAATAATETRKPPSEEPAQQLEGNGTLTPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXATMRPVSPLGQDRAERVIRAMQGFTLAAPSLPPAPFEA 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ62_ECTSI8.900e-2841.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:170592..174493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1051
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14197.1prot_P-fluviatile_contig78.14197.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 171061..174493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817205.28041-UTR-P-fluviatile_contig78:170591..1710601622817205.28041-UTR-P-fluviatile_contig78:170591..171060Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 170592..171060 -
1693571509.4692361-UTR-P-fluviatile_contig78:170591..1710601693571509.4692361-UTR-P-fluviatile_contig78:170591..171060Porterinema fluviatile SAG_2381UTRP-fluviatile_contig78 170592..171060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817205.2959387-CDS-P-fluviatile_contig78:171060..1710891622817205.2959387-CDS-P-fluviatile_contig78:171060..171089Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 171061..171089 -
1693571509.4790998-CDS-P-fluviatile_contig78:171060..1710891693571509.4790998-CDS-P-fluviatile_contig78:171060..171089Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 171061..171089 -
1622817205.3106194-CDS-P-fluviatile_contig78:171592..1716551622817205.3106194-CDS-P-fluviatile_contig78:171592..171655Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 171593..171655 -
1693571509.492337-CDS-P-fluviatile_contig78:171592..1716551693571509.492337-CDS-P-fluviatile_contig78:171592..171655Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 171593..171655 -
1622817205.3227298-CDS-P-fluviatile_contig78:172197..1724081622817205.3227298-CDS-P-fluviatile_contig78:172197..172408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 172198..172408 -
1693571509.5084581-CDS-P-fluviatile_contig78:172197..1724081693571509.5084581-CDS-P-fluviatile_contig78:172197..172408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 172198..172408 -
1622817205.3326147-CDS-P-fluviatile_contig78:173306..1733661622817205.3326147-CDS-P-fluviatile_contig78:173306..173366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 173307..173366 -
1693571509.5243018-CDS-P-fluviatile_contig78:173306..1733661693571509.5243018-CDS-P-fluviatile_contig78:173306..173366Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 173307..173366 -
1622817205.3422034-CDS-P-fluviatile_contig78:174274..1744931622817205.3422034-CDS-P-fluviatile_contig78:174274..174493Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 174275..174493 -
1693571509.535598-CDS-P-fluviatile_contig78:174274..1744931693571509.535598-CDS-P-fluviatile_contig78:174274..174493Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 174275..174493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14197.1

>prot_P-fluviatile_contig78.14197.1 ID=prot_P-fluviatile_contig78.14197.1|Name=mRNA_P-fluviatile_contig78.14197.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=194bp
MNAPDPSTPVTDGEHWSDETEDSPQGLGYTPLEYEALDGDEEENTDNGDL
DGDAGAERVRGTAPDGASSQQDDLASALLRALESDYQACLESERRLVSNG
PVTIDTAVTAADTVAEVSDSIRLRQEQEQEQQQPVTGEKTEEGGVSTAAA
EEAPPRPVSPLGQDRAERVMRAMRGFALAAPARPPARFEAQEP*
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mRNA from alignment at P-fluviatile_contig78:170592..174493-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14197.1 ID=mRNA_P-fluviatile_contig78.14197.1|Name=mRNA_P-fluviatile_contig78.14197.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3902bp|location=Sequence derived from alignment at P-fluviatile_contig78:170592..174493- (Porterinema fluviatile SAG_2381)
ATGAATGCACCCGATCCGAGCACCCCTGTCACGGACGGTGAACATTGGAG
CGACGAAACGGAAGATTCTCCACAAGGGTTGGGCTACACGCCCTTAGAGT
ACGAAGCCCTCGACGGAGATGAAGAGGAGAACACTGACAACGGCGATCTT
GATGGAGATGCAGGAGCAGAAAGAGTACGAGGAACTGCACCGGATGGTGC
AAGCTCTCAACAGGATGATGTTAGTATTTTTGTGTTCAGGAGAAAGAGAG
AGAGGAAAGGGAGGGGAGCAGGCAGGAAGTGGTGGGCGGGGAGACGCTAC
GATAGAAATGCGGGGTAATCTCTCGCGTGGGCTCTCGTCGGCATTCGCAC
TTCGGACAACAACTATGGAAATATATCTGACAACAAACGGGAGAAAAAAA
CAGCGCACGGGACAGCATGCTGCAGCCACCGACTGGCCTCTACACTTGCA
ACCTGCACATCTTGATGGTCAGCCAGACCAACCGCAAAGAGCGCTTGCTC
GATCACACATCCTTCGGATGCATCCTTTGAAGAAATTGGGAGCCGTATGT
GTAAGTTATCCATTTCACCGTTTTAGAGCCGGCGCGCTATCGCACTGTTT
AAACCCCACTGCTGTTCGGCAACTTCACGAGGGAGAAAGAGGAGCGGACA
TTGTTTACGGCGGGATAATATTCAAATGTCGTTGGCTTTGAGAGCGTGAC
ACCGACATATTTGATGAAGCACCACGTATGGCATGTGATGTTGTGTCGAG
GAATTTGCCTCTGGTAGCCACACATTGTAAACGACAATCCACGCCCTCCA
ATGGGTTGCAGTGGCATGTCTTCCCAACTCGTTATGAGTTTCGAACATGA
TGTAATGCCAACAGGTTTGGAGTTCGTCCTGCGGGCTCAATTTTCAGCGT
ATTCACCGTTGCTGCGATCGAGTTGTTGCTGCAGCAGCCGCCGTTTGACG
AAGTGTAGCACGACGGCAAATCACACGAGCGGGGGGTATCGCAATTCAAC
CGAGAAGATAATTTGGATGGACATGAAACTGTATTTCGATTCAGCCTGTC
GATTTCAGGACCCAACGCTAAGTAGTCCAATTTTCTCCCCTATCCCAAAC
CGAACCAAACCGGCGGTCCACGCGCAGTTGGCATCTGCATTGCTGAGGGC
CCTGGAATCAGACTATCAAGCATGCCTCGAGAGCGAGGTAGGAGAGACCG
TGAGGATACAATGGTAATTTAAACCGTTCCTCATGCTTAACCAATCTGGG
TTCGATCATCTTACCGTTCTCGGCGTGTGGGGCACTTGTGACATGTAATC
AGCTCAGATTTAGATGTTGACCTCTTGAGAAAAGTTGGAGCTCAAATTCA
GGGGCCGGTGAAACTTATTCTCGACGAGACCAAAATTGAATTGGCAATTT
TGGTCTCATTCACCGTTTTTGGCAAGACACCGTTTTCCGTCCAGATCTTG
TCAGGGGCAAGATTTGGCAAGACTGGATCAGATTGGACGAAAAAACGGCA
CCTAGACCAATTTTTGGGACCAAGACCCGCGTGGTACCATCGTGTTGTCA
AATTCGATCCAATCAAACCTTGCCCGGGCGCCAAAATCTTAATAAAACTC
GTCCAGATTAGGCGGATGCTTCACCGACCTCTGGATGAGAGCTCGAATTA
TTTCCAAGAAATCGACGTCTGGTTCTGAGCTCGTTACATATCGAAATTGC
CCTAAACGCCGAGATAGGCAAGATTGAATCAAACCAAGATTGGTTCAAAA
TTCGAACCAGTGTTAGGTGGCAATTTCGAACATGGCCAATCCTGTCTTGA
TCCAACATCTTAGGCAAGAGGGTGGCGAAAGCTGACGCATACACGCGGAC
ACGTGACTGTTTTCCGGACCATTGACAATTTGTGCGTTTTGTTCTATTGC
ACTGGTCATGGGACCATTGATTTTGGGCTTGCATTTGTTTTTGTGTGCTC
GCTCCATTCCACGACTCTGGTTGACATCCATTGTACTGTTGCATTGCATG
GGTAAGGGTCAGGGGCACAACGTGCGCACGCTGCCTGATGAAGGCCTTCA
ACTGCAATGTCCGCACCCGTATTGGGTTTCCGCAGAGACGATTAGTGAGC
AATGGGCCTGTCACCATTGATACGGCGGTAACCGCAGCAGACACAGTTGC
TGAGGTTAGCGACAGCATTCGGTTGCGTCAGGAGCAGGAGCAAGAGCAAC
AGCAGCCGGTGACCGGAGAAAAGACGGAAGAGGGAGGGGTGTCAACAGCG
GCGGCGGAGGAAGCACCGCCAAGACCCGTTTCACCACTTGGCCAAGGTCA
GTGGGTAGTCAGGTCAGGATATCTTGCGGGGCACGCTCTCGAAGTAGCAC
TCCCCTATGTTTCTCCGTTGATGCAAAGTATAGCATGAATCCCTCGTGGA
GATTTTGTCTATCTGTTGCTTGTTTCTTTGAAATATCTGATGCTATATTT
TCAGTGGGCATGTGGTTTTCAGTGCACGTTCCGTCGCCGCTCAGTTAGCA
CGCCAGTCTACCTTCAGTACGAGAGTGCCACGTGCATGTAGGCGGTGAGT
CCAAGGGCTTTCGCCGCAATACTGTAAGTCGGCAGGGAGAGAGGCGGACT
CCTTAGACTAGCTCGCCGCAGGCTGAGCGATTACCGCGTTCCCAATGTGT
TCTTTTATTGTTGTCTTTTTGCTTATATTCACGACCGATCAAGGCGAAGT
GTTTGTAACGGCGTGGACTCATTTGAACCTCTGCCGCTCTGAACTTTTCG
TTGTATACGCCGCCCTCGAACTCTTCGTTGTATACGCCGCCGCTGCTAAA
CTTTGGTTCTTGCTGACTTCGCCCGGCGTGGGAGTCAGATCGAGCAGAGC
GAGTGATGCGCGCCATGCGAGGCTTCGCCCTCGCCGCCCCCGCCCGGCCA
CGTGAGAATTTTGTTCGGAAATACGCCAGTTTTCCTGCCGAAAGCGTTCA
ACATATTTCATTACAACACTTCATCTGTACACCCCCATGATGGGGTGTGA
AATTTATTTCTGTCCAAAACCATCTGAATCATGTTTATCTTGGGAGCCTC
CCTCGCTGTTTCCGCCGTTTCCGCCAACATGATGTGACAGTGCGTAGTTT
TGCGCAACATTAGCCATCCACACGCGCAGCTGCGGCGGTCCTACTTCGTC
CCTCGGAAACCCTGATCCCCATCCTCCTTGTCTTGTGCGAGTCTTTCATT
TTCTTGGGAGCGCCGTTGCCCAATCAAGGAAAGCGTTCGTCTCTGAAGAC
GTCAAACTACTGCTGCTTTTGATGCCAAGTATTTGTCACATTTTGGAGCC
TTGTGCTGTCCTCAAGTCCCGCCCCCAGTCGATGCTGTATTGCCGAGCTC
ATGTCATGATATTCTTTGCTTCCTCCTTATGCGGCGGGTCTGGCGAAATT
GCAGCGGCTCGTTTCGAGGCCCAGGAGCCCTAGCGCGCTCGGCATCGCCG
GAGCAAATACCCCAGCAGCGGGACGACAGTATCCACAGCAACAGCAACAT
CATCATCGTCAGCACCAACCGCAATGGCAGCAGCAACAAAATGGCGGCCG
GAGAAAGAGGGGGCGAGGAGGTCCAATGAATAGGACAACGGCAAATCAGG
AGAACCGAAGATAGGACAGGGTGTTTGCAAGGGGTCTTTCGATTGGATGG
CTGGGGGAGGATAGTGATAGTGAGCGGTGCCTCCTCGCCGTGCGAAAGTT
CTGTGCGAAACCGTGCTGGTCAAGCACAGGCAGTTGCTTTCGGCGTCGTC
GGAATACCTTCGATCTGGTTCCCCTCGCCATGATGCTTGTCCACCAGCAG
AGTGGAAAGCTCTCATCACAAAAGGCGATGGTCGAAGCGCATGAAACTTG
ACACATACCTTCGTGGGACTAGGCAGCACTTTTGGGGGTGTGCTGACACC
AC
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:170592..174493-

>mRNA_P-fluviatile_contig78.14197.1 ID=mRNA_P-fluviatile_contig78.14197.1|Name=mRNA_P-fluviatile_contig78.14197.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1164bp|location=Sequence derived from alignment at P-fluviatile_contig78:170592..174493- (Porterinema fluviatile SAG_2381)
ATGAATGCACCCGATCCGAGCACCCCTGTCACGGACGGTGAACATTGGAG
CGACGAAACGGAAGATTCTCCACAAGGGTTGGGCTACACGCCCTTAGAGT
ACGAAGCCCTCGACGGAGATGAAGAGGAGAACACTGACAACGGCGATCTT
GATGGAGATGCAGGAGCAGAAAGAGTACGAGGAACTGCACCGGATGGTGC
AAGCTCTCAACAGGATGATATGAATGCACCCGATCCGAGCACCCCTGTCA
CGGACGGTGAACATTGGAGCGACGAAACGGAAGATTCTCCACAAGGGTTG
GGCTACACGCCCTTAGAGTACGAAGCCCTCGACGGAGATGAAGAGGAGAA
CACTGACAACGGCGATCTTGATGGAGATGCAGGAGCAGAAAGAGTACGAG
GAACTGCACCGGATGGTGCAAGCTCTCAACAGGATGATTTGGCATCTGCA
TTGCTGAGGGCCCTGGAATCAGACTATCAAGCATGCCTCGAGAGCGAGTT
GGCATCTGCATTGCTGAGGGCCCTGGAATCAGACTATCAAGCATGCCTCG
AGAGCGAGAGACGATTAGTGAGCAATGGGCCTGTCACCATTGATACGGCG
GTAACCGCAGCAGACACAGTTGCTGAGGTTAGCGACAGCATTCGGTTGCG
TCAGGAGCAGGAGCAAGAGCAACAGCAGCCGGTGACCGGAGAAAAGACGG
AAGAGGGAGGGGTGTCAACAGCGGCGGCGGAGGAAGCACCGCCAAGACCC
GTTTCACCACTTGGCCAAGAGACGATTAGTGAGCAATGGGCCTGTCACCA
TTGATACGGCGGTAACCGCAGCAGACACAGTTGCTGAGGTTAGCGACAGC
ATTCGGTTGCGTCAGGAGCAGGAGCAAGAGCAACAGCAGCCGGTGACCGG
AGAAAAGACGGAAGAGGGAGGGGTGTCAACAGCGGCGGCGGAGGAAGCAC
CGCCAAGACCCGTTTCACCACTTGGCCAAGATCGAGCAGAGCGAGTGATG
CGCGCCATGCGAGGCTTCGCCCTCGCCGCCCCCGCCCGGCCACATCGAGC
AGAGCGAGTGATGCGCGCCATGCGAGGCTTCGCCCTCGCCGCCCCCGCCC
GGCCACCGGCTCGTTTCGAGGCCCAGGAGCCCTAGCGGCTCGTTTCGAGG
CCCAGGAGCCCTAG
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