mRNA_P-fluviatile_contig78.14189.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig78.14189.1
Unique NamemRNA_P-fluviatile_contig78.14189.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig78.14189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig78contigP-fluviatile_contig78:94363..94814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size452
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817203.5762317-CDS-P-fluviatile_contig78:94362..948121622817203.5762317-CDS-P-fluviatile_contig78:94362..94812Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 94363..94812 +
1693571507.1403537-CDS-P-fluviatile_contig78:94362..948121693571507.1403537-CDS-P-fluviatile_contig78:94362..94812Porterinema fluviatile SAG_2381CDSP-fluviatile_contig78 94363..94812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig78.14189.1prot_P-fluviatile_contig78.14189.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig78 94363..94812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig78.14189.1

>prot_P-fluviatile_contig78.14189.1 ID=prot_P-fluviatile_contig78.14189.1|Name=mRNA_P-fluviatile_contig78.14189.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=150bp
LLGSILLLVARCVLHDTTSLVLFSCVTPVAFVPLLASSEQVGCNHSSSSP
FTILPSMFDFRCPTCVEFPSKALMRTCVFLKDLRESLFRTEQDWARPLML
TQCSSHVSSVENMSSIERKVEPRSSPFPKLTNYLSVSHVPNHVSLVQGRY
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mRNA from alignment at P-fluviatile_contig78:94363..94814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig78.14189.1 ID=mRNA_P-fluviatile_contig78.14189.1|Name=mRNA_P-fluviatile_contig78.14189.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=452bp|location=Sequence derived from alignment at P-fluviatile_contig78:94363..94814+ (Porterinema fluviatile SAG_2381)
CTCCTCGGATCCATCCTCCTGCTCGTGGCCCGCTGCGTTCTCCACGACAC
AACATCGTTGGTACTTTTCTCATGCGTCACACCAGTGGCTTTCGTTCCAC
TGCTTGCAAGTTCTGAACAAGTGGGGTGCAATCACTCCTCTTCCTCACCA
TTCACTATTTTACCGAGTATGTTCGACTTCAGATGCCCTACGTGCGTGGA
ATTCCCCTCGAAGGCCTTGATGCGGACATGTGTTTTTTTAAAAGACTTGC
GCGAAAGTTTATTTCGTACAGAACAGGACTGGGCTCGGCCTCTCATGCTC
ACGCAATGTTCCTCGCACGTGTCGAGCGTTGAAAACATGTCTTCGATAGA
ACGGAAAGTAGAACCGCGATCCTCACCCTTTCCGAAGCTCACCAATTATC
TTTCTGTTTCTCATGTGCCCAATCACGTTTCCCTTGTCCAGGGGCGATAC
TT
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Coding sequence (CDS) from alignment at P-fluviatile_contig78:94363..94814+

>mRNA_P-fluviatile_contig78.14189.1 ID=mRNA_P-fluviatile_contig78.14189.1|Name=mRNA_P-fluviatile_contig78.14189.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=900bp|location=Sequence derived from alignment at P-fluviatile_contig78:94363..94814+ (Porterinema fluviatile SAG_2381)
CTCCTCGGATCCATCCTCCTGCTCGTGGCCCGCTGCGTTCTCCACGACAC
AACATCGTTGGTACTTTTCTCATGCGTCACACCAGTGGCTTTCGTTCCAC
TGCTTGCAAGTTCTGAACAAGTGGGGTGCAATCACTCCTCTTCCTCACCA
TTCACTATTTTACCGAGTATGTTCGACTTCAGATGCCCTACGTGCGTGGA
ATTCCCCTCGAAGGCCTTGATGCGGACATGTGTTTTTTTAAAAGACTTGC
GCGAAAGTTTATTTCGTACAGAACAGGACTGGGCTCGGCCTCTCATGCTC
ACGCAATGTTCCTCGCACGTGTCGAGCGTTGAAAACATGTCTTCGATAGA
ACGGAAAGTAGAACCGCGATCCTCACCCTTTCCGAAGCTCACCAATTATC
TTTCTGTTTCTCATGTGCCCAATCACGTTTCCCTTGTCCAGGGGCGATAC
CTCCTCGGATCCATCCTCCTGCTCGTGGCCCGCTGCGTTCTCCACGACAC
AACATCGTTGGTACTTTTCTCATGCGTCACACCAGTGGCTTTCGTTCCAC
TGCTTGCAAGTTCTGAACAAGTGGGGTGCAATCACTCCTCTTCCTCACCA
TTCACTATTTTACCGAGTATGTTCGACTTCAGATGCCCTACGTGCGTGGA
ATTCCCCTCGAAGGCCTTGATGCGGACATGTGTTTTTTTAAAAGACTTGC
GCGAAAGTTTATTTCGTACAGAACAGGACTGGGCTCGGCCTCTCATGCTC
ACGCAATGTTCCTCGCACGTGTCGAGCGTTGAAAACATGTCTTCGATAGA
ACGGAAAGTAGAACCGCGATCCTCACCCTTTCCGAAGCTCACCAATTATC
TTTCTGTTTCTCATGTGCCCAATCACGTTTCCCTTGTCCAGGGGCGATAC
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