mRNA_P-fluviatile_contig77.14181.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig77.14181.1
Unique NamemRNA_P-fluviatile_contig77.14181.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig77.14181.1 vs. uniprot
Match: A0A6H5JTA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA5_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.310e-48
Identity = 90/119 (75.63%), Postives = 103/119 (86.55%), Query Frame = -1 
Query:  239 QLMTQTDNHESRLAALERMLEDRADQTVSSASDRGRSTSRGPAKRNVSHNDRAKNQKQKVAFSRDTKADGKKGGVISNRDNERPCTYPGCAGQDKADTHCRRECRTERRDRKNGYKVVK 595
            QLMTQTDNHESRL ALERMLED+  +TVSSA+DRGRSTSR  AKR+    DR K+ KQKVAFS+DTKADG  GGV++N+DNE PCTYPGCAGQDKA+THCRR+CRTERRD+K G +VVK
Sbjct:  411 QLMTQTDNHESRLQALERMLEDQTSRTVSSAADRGRSTSRARAKRHAPSADRTKSPKQKVAFSKDTKADGTGGGVMTNKDNEPPCTYPGCAGQDKANTHCRRDCRTERRDKKRGIRVVK 529
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig77.14181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTA5_9PHAE2.310e-4875.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig77contigP-fluviatile_contig77:499682..500276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig77.14181.1prot_P-fluviatile_contig77.14181.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig77 499767..500090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817197.5195556-UTR-P-fluviatile_contig77:499681..4997661622817197.5195556-UTR-P-fluviatile_contig77:499681..499766Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 499682..499766 +
1693571473.7667055-UTR-P-fluviatile_contig77:499681..4997661693571473.7667055-UTR-P-fluviatile_contig77:499681..499766Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 499682..499766 +
1622817197.541685-UTR-P-fluviatile_contig77:500090..5002761622817197.541685-UTR-P-fluviatile_contig77:500090..500276Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 500091..500276 +
1693571473.7876847-UTR-P-fluviatile_contig77:500090..5002761693571473.7876847-UTR-P-fluviatile_contig77:500090..500276Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 500091..500276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817197.529938-CDS-P-fluviatile_contig77:499766..5000901622817197.529938-CDS-P-fluviatile_contig77:499766..500090Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 499767..500090 +
1693571473.7777734-CDS-P-fluviatile_contig77:499766..5000901693571473.7777734-CDS-P-fluviatile_contig77:499766..500090Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 499767..500090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig77.14181.1

>prot_P-fluviatile_contig77.14181.1 ID=prot_P-fluviatile_contig77.14181.1|Name=mRNA_P-fluviatile_contig77.14181.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
MFSYQRTDATVSASGFPLVYHDSLSYCVRVTRLRSQVGRGMVPCWATLSV
HFDDFVTVLAVPPFCAALTTAVRVCFVLARTAWVGARTFIVAVANHTPFF
TISFGVP*
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mRNA from alignment at P-fluviatile_contig77:499682..500276+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig77.14181.1 ID=mRNA_P-fluviatile_contig77.14181.1|Name=mRNA_P-fluviatile_contig77.14181.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=595bp|location=Sequence derived from alignment at P-fluviatile_contig77:499682..500276+ (Porterinema fluviatile SAG_2381)
TGTGTTGTGATTTTAGGTTGTTCAACCGTACACAAGCGGACTCGGGCTGC
GCTACGACTGCTTTGATACAGCGTGCTTTGCGTGTATGTTTTCCTACCAG
AGGACAGACGCGACGGTTTCGGCGTCTGGGTTCCCTCTCGTCTACCATGA
CTCTTTGAGCTACTGCGTTAGAGTTACGAGACTGCGGTCCCAAGTGGGCC
GAGGGATGGTGCCCTGCTGGGCAACCCTATCCGTCCACTTTGACGACTTT
GTAACCGTTCTTGCGGTCCCTCCGTTCTGTGCGGCACTCACGACGGCAGT
GCGTGTCTGCTTTGTCTTGGCCCGCACAGCCTGGGTAGGTGCAAGGACGT
TCATTGTCGCGGTTGCTAATCACACCCCCTTTTTTACCATCAGCTTTGGT
GTCCCTTGAAAAGGCCACTTTTTGCTTTTGGTTTTTGGCCCGGTCGTTGT
GCGATACGTTCCGCTTCGCTGGTCCCCGACTGGTGCTGCGGCCCCTGTCT
GACGCGCTGGACACGGTTTGGTCTGCACGGTCCTCCAACATGCGTTCGAG
GGCTGCAAGACGGGACTCGTGGTTGTCCGTTTGCGTCATGAGCTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig77:499682..500276+

>mRNA_P-fluviatile_contig77.14181.1 ID=mRNA_P-fluviatile_contig77.14181.1|Name=mRNA_P-fluviatile_contig77.14181.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig77:499682..500276+ (Porterinema fluviatile SAG_2381)
ATGTTTTCCTACCAGAGGACAGACGCGACGGTTTCGGCGTCTGGGTTCCC
TCTCGTCTACCATGACTCTTTGAGCTACTGCGTTAGAGTTACGAGACTGC
GGTCCCAAGTGGGCCGAGGGATGGTGCCCTGCTGGGCAACCCTATCCGTC
CACTTTGACGACTTTGTAACCGTTCTTGCGGTCCCTCCGTTCTGTGCGGC
ACTCACGACGGCAGTGCGTGTCTGCTTTGTCTTGGCCCGCACAGCCTGGG
TAGGTGCAAGGACGTTCATTGTCGCGGTTGCTAATCACACCCCCTTTTTT
ACCATCAGCTTTGGTGTCCCTTGAATGTTTTCCTACCAGAGGACAGACGC
GACGGTTTCGGCGTCTGGGTTCCCTCTCGTCTACCATGACTCTTTGAGCT
ACTGCGTTAGAGTTACGAGACTGCGGTCCCAAGTGGGCCGAGGGATGGTG
CCCTGCTGGGCAACCCTATCCGTCCACTTTGACGACTTTGTAACCGTTCT
TGCGGTCCCTCCGTTCTGTGCGGCACTCACGACGGCAGTGCGTGTCTGCT
TTGTCTTGGCCCGCACAGCCTGGGTAGGTGCAAGGACGTTCATTGTCGCG
GTTGCTAATCACACCCCCTTTTTTACCATCAGCTTTGGTGTCCCTTGA
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