mRNA_P-fluviatile_contig77.14179.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig77.14179.1
Unique NamemRNA_P-fluviatile_contig77.14179.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig77.14179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig77contigP-fluviatile_contig77:467147..468038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_006240.2
Exons3
Model size515
Cds size513
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig77.14179.1prot_P-fluviatile_contig77.14179.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig77 467147..468038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817197.3098097-CDS-P-fluviatile_contig77:467146..4672321622817197.3098097-CDS-P-fluviatile_contig77:467146..467232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 467147..467232 -
1693571473.640409-CDS-P-fluviatile_contig77:467146..4672321693571473.640409-CDS-P-fluviatile_contig77:467146..467232Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 467147..467232 -
1622817197.3231392-CDS-P-fluviatile_contig77:467346..4675201622817197.3231392-CDS-P-fluviatile_contig77:467346..467520Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 467347..467520 -
1693571473.6518853-CDS-P-fluviatile_contig77:467346..4675201693571473.6518853-CDS-P-fluviatile_contig77:467346..467520Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 467347..467520 -
1622817197.3335807-CDS-P-fluviatile_contig77:467785..4680381622817197.3335807-CDS-P-fluviatile_contig77:467785..468038Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 467786..468038 -
1693571473.6604524-CDS-P-fluviatile_contig77:467785..4680381693571473.6604524-CDS-P-fluviatile_contig77:467785..468038Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 467786..468038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig77.14179.1

>prot_P-fluviatile_contig77.14179.1 ID=prot_P-fluviatile_contig77.14179.1|Name=mRNA_P-fluviatile_contig77.14179.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=171bp
RRHSALFGILWTWVDMSLPLGHFLWVAYVRALIVLVLTTQRLCSASVGDR
GFHLSSLDSILQQDGGATTIKEGDLREALSNCEEAVRSDSLNYRYSTKLL
DVLQLVIDDRQRLELFEDVQEAFLDYKSFTMREASGILAANHGYKFEQRG
RSYGRWSFTARGSPTVIPND*
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mRNA from alignment at P-fluviatile_contig77:467147..468038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig77.14179.1 ID=mRNA_P-fluviatile_contig77.14179.1|Name=mRNA_P-fluviatile_contig77.14179.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=892bp|location=Sequence derived from alignment at P-fluviatile_contig77:467147..468038- (Porterinema fluviatile SAG_2381)
CGACGGCACAGTGCGCTTTTTGGCATTTTATGGACGTGGGTAGACATGTC
TTTACCGCTTGGCCACTTCTTGTGGGTCGCTTATGTCAGAGCGTTGATCG
TGTTAGTCCTGACGACTCAAAGGTTATGCTCAGCGTCGGTTGGCGACAGA
GGTTTCCATCTTTCCAGTTTGGACTCGATCCTGCAACAGGACGGTGGTGC
CACGACTATCAAAGAGGGAGACCTTCGGGAGGCATTGAGTAATTGCGAAG
AAGGTGATCAGCCGTAGTTCCTGTGGTATAGCGTCAAGTTGTCTCCGCGA
ATGTGTTTGCTCTCTCCACCTCCCCCCTGTTGTCGCACTCTCTCTCGCCC
TGTCTACCGTGTCGCTTTCGCCTCGCTTCCATCATGGTCCATACCCCTAT
CCTGGTGTACAGATCTTATCATTTCAAAATTTGGATCAAACAGCCCCGCT
GAGAGGCATCACACGTAATTCATCGGGGCTGAATACAGCAAGTTCCTTTC
CTATGCCCGTGTTCTCAGCCGTCAGGTCAGACTCCTTGAACTACAGATAC
AGTACGAAGCTCCTCGACGTACTCCAGCTGGTGATCGACGACCGACAGCG
CCTGGAGTTGTTTGAAGATGTTCAGGAAGCATTTCTTGACTATAAAAGCT
TTACGATGAGAGAAGCGTCCGGGATTCTCGCTGCGAATCATGGTGAGGCG
ATGGACAAGGAGGATGGAGAGGCAGTTGATCCCGCCGTGCAAGAGGCCTT
CTTTCGACATACCTTTCGGATTTCCCCCGAAAATCCGGTCGCCGCTCGCT
CCTTAGGGTACAAGTTCGAGCAGCGGGGAAGGAGCTACGGGCGATGGAGC
TTTACCGCGAGGGGCTCACCCACAGTGATTCCCAACGACTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig77:467147..468038-

>mRNA_P-fluviatile_contig77.14179.1 ID=mRNA_P-fluviatile_contig77.14179.1|Name=mRNA_P-fluviatile_contig77.14179.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1026bp|location=Sequence derived from alignment at P-fluviatile_contig77:467147..468038- (Porterinema fluviatile SAG_2381)
CGACGGCACAGTGCGCTTTTTGGCATTTTATGGACGTGGGTAGACATGTC
TTTACCGCTTGGCCACTTCTTGTGGGTCGCTTATGTCAGAGCGTTGATCG
TGTTAGTCCTGACGACTCAAAGGTTATGCTCAGCGTCGGTTGGCGACAGA
GGTTTCCATCTTTCCAGTTTGGACTCGATCCTGCAACAGGACGGTGGTGC
CACGACTATCAAAGAGGGAGACCTTCGGGAGGCATTGAGTAATTGCGAAG
AAGCGACGGCACAGTGCGCTTTTTGGCATTTTATGGACGTGGGTAGACAT
GTCTTTACCGCTTGGCCACTTCTTGTGGGTCGCTTATGTCAGAGCGTTGA
TCGTGTTAGTCCTGACGACTCAAAGGTTATGCTCAGCGTCGGTTGGCGAC
AGAGGTTTCCATCTTTCCAGTTTGGACTCGATCCTGCAACAGGACGGTGG
TGCCACGACTATCAAAGAGGGAGACCTTCGGGAGGCATTGAGTAATTGCG
AAGAAGCCGTCAGGTCAGACTCCTTGAACTACAGATACAGTACGAAGCTC
CTCGACGTACTCCAGCTGGTGATCGACGACCGACAGCGCCTGGAGTTGTT
TGAAGATGTTCAGGAAGCATTTCTTGACTATAAAAGCTTTACGATGAGAG
AAGCGTCCGGGATTCTCGCTGCGAATCATGCCGTCAGGTCAGACTCCTTG
AACTACAGATACAGTACGAAGCTCCTCGACGTACTCCAGCTGGTGATCGA
CGACCGACAGCGCCTGGAGTTGTTTGAAGATGTTCAGGAAGCATTTCTTG
ACTATAAAAGCTTTACGATGAGAGAAGCGTCCGGGATTCTCGCTGCGAAT
CATGGGTACAAGTTCGAGCAGCGGGGAAGGAGCTACGGGCGATGGAGCTT
TACCGCGAGGGGCTCACCCACAGTGATTCCCAACGACTAGGGTACAAGTT
CGAGCAGCGGGGAAGGAGCTACGGGCGATGGAGCTTTACCGCGAGGGGCT
CACCCACAGTGATTCCCAACGACTAG
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