mRNA_P-fluviatile_contig77.14176.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig77.14176.1
Unique NamemRNA_P-fluviatile_contig77.14176.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig77.14176.1 vs. uniprot
Match: D7FHX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX6_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.000e-27
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:  262 LQENCGALGDKPRKLALCCSRHICPKEHIQMIACLRATRDASMCHEFRDEVERCGAKMSQRMLRVALADDWF 477
            +Q  CG   DKPR+ A+C SR +CPKE  Q++AC+R TRDASMCHEFRDEVERCG KMSQR+LR AL+DDWF
Sbjct:   73 VQGKCGQFIDKPRRFAVCSSRQLCPKEQSQLLACIRTTRDASMCHEFRDEVERCGVKMSQRLLRAALSDDWF 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig77.14176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHX6_ECTSI4.000e-2769.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig77contigP-fluviatile_contig77:451966..456531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006260.1
Exons3
Model size1344
Cds size480
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig77.14176.1prot_P-fluviatile_contig77.14176.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig77 452830..456531 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817202.731161-UTR-P-fluviatile_contig77:451965..4528291622817202.731161-UTR-P-fluviatile_contig77:451965..452829Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 451966..452829 -
1693571505.362733-UTR-P-fluviatile_contig77:451965..4528291693571505.362733-UTR-P-fluviatile_contig77:451965..452829Porterinema fluviatile SAG_2381UTRP-fluviatile_contig77 451966..452829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817202.7448683-CDS-P-fluviatile_contig77:452829..4529581622817202.7448683-CDS-P-fluviatile_contig77:452829..452958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 452830..452958 -
1693571505.3713892-CDS-P-fluviatile_contig77:452829..4529581693571505.3713892-CDS-P-fluviatile_contig77:452829..452958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 452830..452958 -
1622817202.757501-CDS-P-fluviatile_contig77:453737..4538211622817202.757501-CDS-P-fluviatile_contig77:453737..453821Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 453738..453821 -
1693571505.3808684-CDS-P-fluviatile_contig77:453737..4538211693571505.3808684-CDS-P-fluviatile_contig77:453737..453821Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 453738..453821 -
1622817202.7705314-CDS-P-fluviatile_contig77:456264..4565311622817202.7705314-CDS-P-fluviatile_contig77:456264..456531Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 456265..456531 -
1693571505.390642-CDS-P-fluviatile_contig77:456264..4565311693571505.390642-CDS-P-fluviatile_contig77:456264..456531Porterinema fluviatile SAG_2381CDSP-fluviatile_contig77 456265..456531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig77.14176.1

>prot_P-fluviatile_contig77.14176.1 ID=prot_P-fluviatile_contig77.14176.1|Name=mRNA_P-fluviatile_contig77.14176.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=160bp
CRPQQGPQLQEPRRRGARSIPRHPAKTRRLRQAAAVVSLLIGRGQHRRRP
YCRRLPRRRQALLDRLEAGSSCSSGHEPCPAELQPVDLQENCGALGDKPR
KLALCCSRHICPKEHIQMIACLRATRDASMCHEFRDEVERCGAKMSQRML
RVALADDWF*
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mRNA from alignment at P-fluviatile_contig77:451966..456531-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig77.14176.1 ID=mRNA_P-fluviatile_contig77.14176.1|Name=mRNA_P-fluviatile_contig77.14176.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4566bp|location=Sequence derived from alignment at P-fluviatile_contig77:451966..456531- (Porterinema fluviatile SAG_2381)
TGCCGCCCACAACAGGGCCCACAACTCCAGGAACCACGCCGCCGCGGCGC
CCGATCGATTCCACGTCATCCAGCAAAAACTCGCCGCCTCCGCCAGGCTG
CTGCTGTTGTGTCTCTCCTTATTGGCCGGGGGCAGCACCGCCGCCGCCCC
TACTGCCGGCGCTTGCCAAGGCGCCGCCAGGCCCTCCTAGACCGTCTAGA
AGCCGGTTCATCTTGCTCATCAGGTCATGAACCTTGTCCTGCAGAGCTCC
AACCCGTGGACCTTCAGGTGCGCGAGTACCTACCGCGATGTCCAACGCCT
CCTCACCGTTTTCCGCCATCGCTGAGTACGATTCCCTCGAGGGATCCGCT
CTAGAGTGTTCGTAGAGGCTCACTATCGCTTATGAACTCAGTGATATGGT
AAACGTGTCTTGTTAGCGTCACAACATAGATCACCTCGGTCCGCATAGAG
GAGAGAAGATACCTCACGACCTGGGGTAGGGGGGCCGTGTTTGGAACGTG
GGACACCCCCTCACAGCCCCCGCACACGGTGCCACACGAAGCCGTCCGGC
GATATACCAGTCAACCCCAGCACACACTGACAGGTTCCACCCCTCGTCGT
AAATGCGAATGATCTCAGAGGAGATCTGACTATTTTGTACCAACGAATTT
CTCCGCACGTGGCAGCACATAATCTGTATGTTGTGTGTTGCACTTTGTAC
TGTGATTGCGAACTAAGTCACCCTCAATATTCTAGGGTTCCTTCCAAAGG
GACGACGTGAGATGTCGACGTGAAAAAGGTCGACGCGAGTTGACGCGACG
GTTGAGGACACGACGTGAAATATTTTCGCCGCCTGTTCCCGTTGGGCGCA
ACGACCTACGATGCCCCCTGTCGGATTTTTGTCCTTATGTCCAGCCCACG
CACATGCTACAACCACGCCGTCGCCCAGAGAAATGGCTACAAAATCTCCG
ACGTTTTGAGTCTCGGGACGATGGCCGACATGGCTTGCACCTTCATCGCC
ACTGCAGCGACAGGGTTGTGCCAATCTGTTCGCCTCGCCAGTAAGGGCGC
AACAGGGAGATGTCGAAATTCAAACAGCATCCGTTTTTTCGGAAGTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGACTCTCTCCCTCT
CTCTCCTGCGCACCTTCCTACAGCAGTGGAGCTTCCACGCCTGGGAAGGT
GCTTGATGTTTTCAAATAGAGGGGCCATCGTCGTGCCGGCCACCGACGTC
ATTGCCGCTACACGGTGTTGCGGTGTTGGCTCACGCGTGACGAATGCGCG
CTTGGGGTGTCTCAACTGCAATTCCCTTTGTGCGAGGGTGCGTGTGCATC
CTACAGAATCAGCTTCTGTCCACAAAAATGCAACAGGGAGCATCCATGCC
CACACGAGGTCTTCGTGCACCGTATTGGCGACGTTGCCCTGTTCGTGCAG
TTGCTGTTCATTGACACAGCTGTAGCTACCTCAGTAGCTGCCGTTTGGTG
AGAGTCCAGGTTCACAAACACAGAGTGATGTATTATTCACAAACACACCG
ACGCCCAAGTTGCATTGACAGTTACAGACTTGAACAAATAACCAAGCCGA
TGAACCTGTTCGCCAGAAAGCCAGAATCGTAGTACAAGGCTTCCATGAAG
CCGACACTGGTGCAGACAAGGCACCGGTTGCCTTGTCTGCACCAGTGTCG
GCGTCAGTGTGAATAAGACATCACTCTGTGTTTGTCGACCTGGCCTCTCA
CCATACGCCAGCTACTGAGGTAGCTACAGCTGTGTCAACGTGCACAGCGA
CTGCACGAGCAGGGCAATAACGCCAATTCACCGATCTCAACACTGCGTAG
TACCGTCAAGTTTCTCACGTCGAGAAACAAACGAAAACGCCGTAAGATTC
GGAAAATTCGACGCGACTTTTTCGGAAGACCGGTGTGAGAAATCTGTGTA
GGAAATTCTCACGTCGTGCTTTCACGTTCACGTCATGTGTTCACGTCAGA
GAAGCCCGGGTGGGAACCGTCGGTATGTTGATGAGGAAACAGCGCGAAAA
AAACAACACTGCAGTGCTTCGTTTTAGCATCAGGCCTCCGCAATCTGTAG
CTGTGTCGTCGTGAAATGCTCTCAGTCACCTGTTCTCAAGATGTCGCGCT
CGTGCCTCCCTCGATAGTTTTTGATCGAGACGTTTCTATGTGCTGAGGTC
TTAACCTCATAATGAATGATCGGTTGCTGTGGCCTTAGGAAAATCTTTCT
CGAAGTTTCGAAGGACAGGAACTGTAGCACCATTTCTGGTGCCTGGATAA
GAACCATCACACTAATATTTACATGTGTTGGCCACTGGCAGGCAAGAACC
TGACCCTTGCGCAAAACAAGATATGCTGAAATGCGGGCCCATACTGCATT
CGCTGCCCGGAGCCTGGCAGAATAATTCGTGTTTGGCCGAATCGAACCCC
TCGGAACCTCAAAAGGTCCACGGCGCCGTGGACGCCATATACTTGGGCTG
CTAAAAGTTACATACAGCTGCAGTCGCGCACAAGCTCTCAGAAGCTTTTT
ACGTTGCATAGGTGGGCACCGTACACCAATACATGCGTGTCACTTTCAAC
ACGGTTACCGATAGCACTCGTCTCTCCTCTCGCCCTCTCGCAAACCCCTG
CTAGCCCCCGTCTTGGTTTTCCCCTACCCACTTTGCGTTCGCCGTGGTGC
TTGAAAACAGGAGAATTGCGGTGCACTTGGTGACAAGCCAAGAAAACTCG
CCTTGTGCTGCTCAAGGCATATCTGCCCGAAGGAACACATCCAGGTATGC
GAACGAACGAATCGGTGAAAGAGGCAACGGGGGCAAGTAGCGCCTCAGTG
GCGGCCGCGCGGAAGGAAGAGCACATGGCAGGTGGATCTTAGGACTGCGA
AAGTTGTGTGCTGTACCCAAGTGTGTGTGTTTTAAAATTCATCGAGGGCC
TATGTACCCACTGGTGCTGCACGTGAAAGTGCGTGATATCTCTTAGAGTG
GCTGATACATGTAGAACTCTTGCCAGGCTTCGCAAGATCCAAATCTGCTC
GTGTTTGGGTCGCAGGTCTTGCGCACCGTGTAGAAACATGAGGCACACAC
TTCCCCCTTTACGCCCTAGAGGGATCACACACCGCGAGTTGATTTACCTT
CACTTATCGTCGACTTGAATCTACAAGTGCGGTCGGCTGATCTCACCAAG
CAGAGCAGAACTACGTGATGTTTACGTGCGTGCGTACGCGCTCTCTGCGT
CTTTTGGCTTTGCGCTCCTCCTCTCTTACGTGGATACATGGGCCCAGGAT
TTGCAGCTGTCAACTAACGCTGTTATTTTCTTCCTTCTTGTCCCTCCCTC
TCTCTTTGTCTCTGCCTCTGCTTGCACCTGCTCCATCACACCGTATGTTT
CGTCCTGTTTTTTTCTGACATGTATTTTTTGGTCGATCCGGCGTCTCGCT
CTTACTCCCTTCCTTCCTCCCTTCCTCCCTCCCTCCCTTCCTCCCTCCCT
CCCTCCTCTCCCTTCCTCCCTCCCTTCCTTCCTCCCTTCCTTTCTTCGTC
CTCCGCCTGGCAACAATATAAAGATGATCGCTTGCCTTCGGGCTACGCGA
GACGCGAGCATGTGCCACGAGTTTAGAGACGAAGTCGAGCGCTGCGGGGC
GAAGATGTCGCAGCGAATGCTCCGAGTGGCTCTTGCCGATGACTGGTTCT
AACGCTTGCACTGAGATATGACGGTATTGTGTGCATGAGATGAGCAAATC
ATATCTGTCGCGCTAGATGATGTGCTCATCGTTCGGCTGCGCAAGAGCGA
CATGAGTATGACCACGGCATGGTTGCGGCTGCACTGACAGCAAACTTTTG
CGAAAGTTGTACGTGGTGTTTCTCGTGAGTATTGCTTTGTTGTTGCCACA
TTCAGGGAGAGCGGTGAGAGCTCCTTGAAAGCTTGTGAGCACACGATGCA
GGAAACCTCTCGGGTGCATTTCCTGATTTGTAAGGATCTTCATAGGAGAA
GCGAACCCGTTCAGGGAACACCTGCTCTTTCTTACGTATGCCGAGGCTCA
GATCTGACCTGATAGGTGGACCACAGTCGGCAAGGGCGGGCCTTGGCGTG
TAAACCATGGATACATCAAGGGGAAGTTGGGATTATACAATTAGGGGAAG
TTGGGGTTGTAAAAGTAGATGGAATGAAATCTGTCGGCTCAAAGTTTGAC
AGCATGGAGCAACGCGATCTGGAGGTTTGCTGATTTGCCCGCTGCGGTGT
GGACGGGTGGTTTTATTGAGTCGCTCACCCCGTTAATGATTTTGACATAT
GCCTCCTTGGGTTTCCATAATGTTTTTTGCACCGTCGTTGCTTGGTCAAC
TCATAATGAAATATTCGTTGCTTGGTCTTTGGCGGTGTTACATGTTCATG
CTAGCGATATGTCCACGGCGAATGGCAAGAGTTGGAGGTTGCATGTTATC
TACGCACAACGGCGTGCGAGGATGGGAGGAGGCAAAATTTGGCTTCAGCG
CGCGGAACCCGGAACGAATGACGTGAGAGTCATTTAGACGCAAGAACCTT
CGAAAATAGTACAACT
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Coding sequence (CDS) from alignment at P-fluviatile_contig77:451966..456531-

>mRNA_P-fluviatile_contig77.14176.1 ID=mRNA_P-fluviatile_contig77.14176.1|Name=mRNA_P-fluviatile_contig77.14176.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=960bp|location=Sequence derived from alignment at P-fluviatile_contig77:451966..456531- (Porterinema fluviatile SAG_2381)
TGCCGCCCACAACAGGGCCCACAACTCCAGGAACCACGCCGCCGCGGCGC
CCGATCGATTCCACGTCATCCAGCAAAAACTCGCCGCCTCCGCCAGGCTG
CTGCTGTTGTGTCTCTCCTTATTGGCCGGGGGCAGCACCGCCGCCGCCCC
TACTGCCGGCGCTTGCCAAGGCGCCGCCAGGCCCTCCTAGACCGTCTAGA
AGCCGGTTCATCTTGCTCATCAGGTCATGAACCTTGTCCTGCAGAGCTCC
AACCCGTGGACCTTCAGTGCCGCCCACAACAGGGCCCACAACTCCAGGAA
CCACGCCGCCGCGGCGCCCGATCGATTCCACGTCATCCAGCAAAAACTCG
CCGCCTCCGCCAGGCTGCTGCTGTTGTGTCTCTCCTTATTGGCCGGGGGC
AGCACCGCCGCCGCCCCTACTGCCGGCGCTTGCCAAGGCGCCGCCAGGCC
CTCCTAGACCGTCTAGAAGCCGGTTCATCTTGCTCATCAGGTCATGAACC
TTGTCCTGCAGAGCTCCAACCCGTGGACCTTCAGGAGAATTGCGGTGCAC
TTGGTGACAAGCCAAGAAAACTCGCCTTGTGCTGCTCAAGGCATATCTGC
CCGAAGGAACACATCCAGGAGAATTGCGGTGCACTTGGTGACAAGCCAAG
AAAACTCGCCTTGTGCTGCTCAAGGCATATCTGCCCGAAGGAACACATCC
AGATGATCGCTTGCCTTCGGGCTACGCGAGACGCGAGCATGTGCCACGAG
TTTAGAGACGAAGTCGAGCGCTGCGGGGCGAAGATGTCGCAGCGAATGCT
CCGAGTGGCTCTTGCCGATGACTGGTTCTAAATGATCGCTTGCCTTCGGG
CTACGCGAGACGCGAGCATGTGCCACGAGTTTAGAGACGAAGTCGAGCGC
TGCGGGGCGAAGATGTCGCAGCGAATGCTCCGAGTGGCTCTTGCCGATGA
CTGGTTCTAA
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